Wall clock time and date at job start Tue Mar 31 2020 18:48:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52996 * 109.47274 * 2 1 4 4 C 1.52997 * 109.47274 * 180.02562 * 3 2 1 5 5 C 1.53004 * 109.47307 * 305.00345 * 4 3 2 6 6 O 1.42900 * 109.46981 * 64.99935 * 4 3 2 7 7 C 1.52999 * 109.47286 * 185.00210 * 4 3 2 8 8 N 1.46500 * 109.47008 * 180.02562 * 7 4 3 9 9 C 1.34777 * 120.00130 * 180.02562 * 8 7 4 10 10 O 1.21730 * 119.99584 * 359.97438 * 9 8 7 11 11 C 1.46249 * 120.00284 * 180.02562 * 9 8 7 12 12 C 1.35031 * 120.00009 * 173.20941 * 11 9 8 13 13 C 1.46954 * 120.00022 * 348.68230 * 12 11 9 14 14 C 1.40025 * 120.09848 * 316.40988 * 13 12 11 15 15 C 1.37605 * 119.89108 * 179.69810 * 14 13 12 16 16 C 1.39173 * 120.10550 * 0.59382 * 15 14 13 17 17 O 1.35568 * 119.90030 * 179.69955 * 16 15 14 18 18 C 1.34788 * 117.00075 * 174.34233 * 17 16 15 19 19 H 1.07996 * 119.99644 * 5.05563 * 18 17 16 20 20 C 1.38715 * 120.00100 * 185.06530 * 18 17 16 21 21 N 1.31508 * 120.00220 * 180.02562 * 20 18 17 22 22 Si 1.86801 * 120.00040 * 359.97438 * 20 18 17 23 23 H 1.48500 * 109.47190 * 90.00461 * 22 20 18 24 24 H 1.48504 * 109.47075 * 210.00837 * 22 20 18 25 25 H 1.48505 * 109.47104 * 330.00619 * 22 20 18 26 26 C 1.39177 * 120.20269 * 359.68024 * 16 15 14 27 27 C 1.37602 * 120.09793 * 0.02562 * 26 16 15 28 28 H 1.09001 * 109.47754 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.47243 * 299.99861 * 1 2 3 30 30 H 1.09003 * 109.47102 * 59.99611 * 1 2 3 31 31 H 1.09000 * 109.46557 * 240.00025 * 2 1 3 32 32 H 1.09003 * 109.47102 * 120.00389 * 2 1 3 33 33 H 1.09007 * 109.46509 * 60.00290 * 3 2 1 34 34 H 1.08994 * 109.47235 * 300.00257 * 3 2 1 35 35 H 1.09004 * 109.47065 * 59.99805 * 5 4 3 36 36 H 1.09001 * 109.47320 * 179.97438 * 5 4 3 37 37 H 1.09002 * 109.47159 * 299.99960 * 5 4 3 38 38 H 0.96702 * 113.99740 * 60.00632 * 6 4 3 39 39 H 1.08996 * 109.47401 * 300.00236 * 7 4 3 40 40 H 1.09002 * 109.46944 * 60.00185 * 7 4 3 41 41 H 0.97001 * 120.00339 * 359.97438 * 8 7 4 42 42 H 1.07996 * 120.00430 * 353.20904 * 11 9 8 43 43 H 1.07994 * 119.99540 * 168.68124 * 12 11 9 44 44 H 1.07992 * 120.05471 * 359.97438 * 14 13 12 45 45 H 1.07998 * 119.94573 * 180.27381 * 15 14 13 46 46 H 0.96995 * 120.00489 * 179.97438 * 21 20 18 47 47 H 1.07997 * 119.95347 * 179.97438 * 26 16 15 48 48 H 1.08007 * 120.04537 * 180.02562 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4424 -0.0006 5 6 4.0805 0.6148 1.1806 6 8 4.0457 0.8732 -1.2220 7 6 4.0801 2.8794 0.1251 8 7 5.5450 2.8794 0.1239 9 6 6.2191 4.0421 0.2260 10 8 5.6104 5.0922 0.3187 11 6 7.6815 4.0421 0.2242 12 6 8.3566 5.2110 0.1880 13 6 7.6429 6.4632 -0.0989 14 6 6.6902 6.5094 -1.1241 15 6 6.0199 7.6825 -1.3850 16 6 6.2964 8.8250 -0.6400 17 8 5.6379 9.9801 -0.9046 18 6 5.8642 11.0175 -0.0743 19 1 6.6049 10.9321 0.7070 20 6 5.1456 12.1946 -0.2232 21 7 5.3667 13.2070 0.5865 22 14 3.8647 12.3423 -1.5749 23 1 2.5463 11.8946 -1.0586 24 1 3.7697 13.7577 -2.0142 25 1 4.2601 11.4921 -2.7265 26 6 7.2466 8.7853 0.3762 27 6 7.9175 7.6151 0.6482 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.8932 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 1.6766 1.9562 0.8901 34 1 1.6767 1.9563 -0.8899 35 1 3.7171 -0.4090 1.0910 36 1 5.1705 0.6144 1.1799 37 1 3.7176 1.0489 2.1123 38 1 3.7601 1.3479 -2.0146 39 1 3.7164 3.4691 -0.7163 40 1 3.7171 3.3135 1.0568 41 1 6.0300 2.0426 0.0504 42 1 8.2217 3.1074 0.2518 43 1 9.4210 5.2256 0.3699 44 1 6.4786 5.6247 -1.7061 45 1 5.2818 7.7179 -2.1726 46 1 4.8645 14.0302 0.4822 47 1 7.4583 9.6744 0.9515 48 1 8.6544 7.5851 1.4373 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000493184706.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:48:19 Heat of formation + Delta-G solvation = -74.096355 kcal Electronic energy + Delta-G solvation = -28075.121074 eV Core-core repulsion = 24096.306103 eV Total energy + Delta-G solvation = -3978.814971 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -40.07698 -39.18503 -38.55459 -36.60361 -34.64397 -34.29382 -33.07287 -32.28416 -31.31750 -30.20008 -28.46549 -27.43441 -26.55190 -25.27267 -23.11220 -21.96074 -21.78148 -20.85087 -20.62508 -19.29589 -17.83242 -17.46429 -16.97936 -16.84607 -16.05371 -15.47885 -15.31038 -15.07781 -14.74546 -14.44729 -14.31178 -13.86704 -13.81941 -13.66929 -13.56351 -13.34018 -12.95646 -12.75807 -12.71896 -12.56642 -12.31877 -12.19536 -12.14386 -12.09916 -12.06634 -11.61862 -11.44837 -11.03720 -10.94775 -10.85630 -10.75902 -10.65943 -10.26344 -10.13960 -9.52530 -9.44981 -9.21073 -8.99430 -8.74635 -8.00364 -6.97100 -6.41393 -4.05301 1.19359 2.33795 2.62835 3.23302 3.23731 3.27319 3.41767 3.59774 3.90164 4.24717 4.24835 4.41789 4.46464 4.62961 4.73505 4.82828 4.90292 5.03886 5.10039 5.15191 5.18955 5.22007 5.33055 5.38626 5.46260 5.50809 5.56627 5.58616 5.63986 5.68148 5.68523 5.76381 5.77169 5.94499 5.96468 6.18742 6.27209 6.38262 6.48347 6.51425 6.67710 6.93157 7.18867 7.26805 7.32564 7.39251 7.65513 7.68370 7.85456 8.07209 8.51197 8.93859 9.58344 10.66013 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.012642 B = 0.002513 C = 0.002186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2214.272433 B =11139.947599 C =12805.506316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.121 4.121 3 C -0.144 4.144 4 C 0.121 3.879 5 C -0.141 4.141 6 O -0.556 6.556 7 C 0.097 3.903 8 N -0.729 5.729 9 C 0.537 3.463 10 O -0.515 6.515 11 C -0.262 4.262 12 C 0.024 3.976 13 C -0.180 4.180 14 C 0.011 3.989 15 C -0.203 4.203 16 C 0.177 3.823 17 O -0.213 6.213 18 C -0.387 4.387 19 H 0.108 0.892 20 C 0.063 3.937 21 N -0.877 5.877 22 Si 0.905 3.095 23 H -0.273 1.273 24 H -0.282 1.282 25 H -0.259 1.259 26 C -0.238 4.238 27 C -0.044 4.044 28 H 0.053 0.947 29 H 0.053 0.947 30 H 0.053 0.947 31 H 0.067 0.933 32 H 0.065 0.935 33 H 0.075 0.925 34 H 0.069 0.931 35 H 0.069 0.931 36 H 0.062 0.938 37 H 0.072 0.928 38 H 0.378 0.622 39 H 0.068 0.932 40 H 0.073 0.927 41 H 0.399 0.601 42 H 0.121 0.879 43 H 0.123 0.877 44 H 0.102 0.898 45 H 0.113 0.887 46 H 0.280 0.720 47 H 0.132 0.868 48 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.166 -27.223 -1.221 27.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.158 4.158 3 C -0.182 4.182 4 C 0.080 3.920 5 C -0.198 4.198 6 O -0.362 6.362 7 C -0.028 4.028 8 N -0.383 5.383 9 C 0.327 3.673 10 O -0.391 6.391 11 C -0.283 4.283 12 C 0.005 3.995 13 C -0.181 4.181 14 C -0.008 4.008 15 C -0.222 4.222 16 C 0.124 3.876 17 O -0.118 6.118 18 C -0.463 4.463 19 H 0.125 0.875 20 C -0.140 4.140 21 N -0.515 5.515 22 Si 0.731 3.269 23 H -0.198 1.198 24 H -0.208 1.208 25 H -0.183 1.183 26 C -0.257 4.257 27 C -0.062 4.062 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.086 0.914 32 H 0.084 0.916 33 H 0.093 0.907 34 H 0.087 0.913 35 H 0.088 0.912 36 H 0.081 0.919 37 H 0.091 0.909 38 H 0.226 0.774 39 H 0.086 0.914 40 H 0.092 0.908 41 H 0.234 0.766 42 H 0.139 0.861 43 H 0.141 0.859 44 H 0.120 0.880 45 H 0.131 0.869 46 H 0.090 0.910 47 H 0.150 0.850 48 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -2.581 -26.558 -0.852 26.697 hybrid contribution -0.600 0.212 -0.669 0.923 sum -3.181 -26.346 -1.520 26.580 Atomic orbital electron populations 1.21799 0.95934 1.01595 1.01861 1.21511 0.95502 0.96150 1.02669 1.22230 0.94469 0.98164 1.03354 1.21466 0.92905 0.91528 0.86090 1.21815 1.01837 1.00416 0.95782 1.86523 1.77126 1.57186 1.15386 1.21932 0.81496 0.96332 1.03046 1.45876 1.06307 1.09519 1.76570 1.18519 0.88655 0.83303 0.76825 1.90996 1.70078 1.30085 1.47957 1.22620 0.92958 0.98609 1.14154 1.22347 0.98294 0.91675 0.87232 1.18357 1.04176 0.92960 1.02583 1.20436 0.91146 0.94828 0.94369 1.19994 1.05772 0.91572 1.04881 1.19266 0.90304 0.85864 0.92209 1.83504 1.60222 1.17791 1.50239 1.20828 1.23225 0.89960 1.12251 0.87472 1.24490 0.97714 0.94038 0.97796 1.69623 1.41102 1.04025 1.36747 0.86181 0.81149 0.77399 0.82193 1.19849 1.20757 1.18317 1.21071 1.02180 0.99341 1.03105 1.20801 0.97132 0.91443 0.96831 0.92776 0.92751 0.92783 0.91395 0.91646 0.90656 0.91260 0.91247 0.91899 0.90935 0.77423 0.91408 0.90836 0.76609 0.86080 0.85900 0.87964 0.86895 0.91015 0.85028 0.87316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.90 9.91 37.16 0.37 -0.54 16 2 C -0.12 -0.74 5.34 -26.73 -0.14 -0.89 16 3 C -0.14 -0.94 4.48 -26.73 -0.12 -1.06 16 4 C 0.12 0.88 0.74 -90.62 -0.07 0.81 16 5 C -0.14 -0.96 8.18 37.16 0.30 -0.66 16 6 O -0.56 -4.14 12.26 -35.23 -0.43 -4.57 16 7 C 0.10 0.95 4.78 -4.04 -0.02 0.93 16 8 N -0.73 -7.71 5.14 -61.76 -0.32 -8.03 16 9 C 0.54 7.65 6.77 -13.04 -0.09 7.56 16 10 O -0.51 -9.70 12.17 5.16 0.06 -9.63 16 11 C -0.26 -3.22 9.90 -37.50 -0.37 -3.59 16 12 C 0.02 0.33 9.80 -37.19 -0.36 -0.03 16 13 C -0.18 -3.24 4.54 -105.03 -0.48 -3.72 16 14 C 0.01 0.21 6.59 -39.14 -0.26 -0.05 16 15 C -0.20 -4.41 9.97 -39.47 -0.39 -4.80 16 16 C 0.18 4.33 6.66 -38.89 -0.26 4.07 16 17 O -0.21 -5.85 8.57 0.73 0.01 -5.84 16 18 C -0.39 -11.19 9.94 30.91 0.31 -10.88 16 19 H 0.11 3.16 5.41 -52.49 -0.28 2.87 16 20 C 0.06 1.80 5.49 -17.51 -0.10 1.71 16 21 N -0.88 -25.66 13.96 55.48 0.77 -24.89 16 22 Si 0.91 22.09 28.62 -169.99 -4.86 17.22 16 23 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 24 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 25 H -0.26 -6.35 7.11 56.52 0.40 -5.94 16 26 C -0.24 -5.42 9.14 -39.46 -0.36 -5.79 16 27 C -0.04 -0.84 9.78 -39.15 -0.38 -1.23 16 28 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 29 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 30 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 31 H 0.07 0.45 7.82 -51.93 -0.41 0.04 16 32 H 0.06 0.39 6.35 -51.93 -0.33 0.06 16 33 H 0.07 0.50 8.14 -51.92 -0.42 0.08 16 34 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.07 0.44 6.35 -51.93 -0.33 0.11 16 36 H 0.06 0.43 6.86 -51.93 -0.36 0.08 16 37 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.38 1.96 9.05 45.56 0.41 2.38 16 39 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 40 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 41 H 0.40 3.40 7.17 -40.82 -0.29 3.11 16 42 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 43 H 0.12 1.30 8.06 -52.49 -0.42 0.87 16 44 H 0.10 1.78 7.02 -52.49 -0.37 1.41 16 45 H 0.11 2.32 8.06 -52.49 -0.42 1.89 16 46 H 0.28 7.54 8.31 -40.82 -0.34 7.20 16 47 H 0.13 3.11 5.62 -52.49 -0.29 2.81 16 48 H 0.11 1.77 8.06 -52.48 -0.42 1.35 16 LS Contribution 391.42 15.07 5.90 5.90 Total: -1.00 -33.18 391.42 -7.75 -40.93 By element: Atomic # 1 Polarization: 13.53 SS G_CDS: -6.46 Total: 7.07 kcal Atomic # 6 Polarization: -15.74 SS G_CDS: -2.42 Total: -18.16 kcal Atomic # 7 Polarization: -33.37 SS G_CDS: 0.46 Total: -32.92 kcal Atomic # 8 Polarization: -19.69 SS G_CDS: -0.36 Total: -20.05 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -4.86 Total: 17.22 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -33.18 -7.75 -40.93 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493184706.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.164 kcal (2) G-P(sol) polarization free energy of solvation -33.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.933 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds