Wall clock time and date at job start Tue Mar 31 2020 18:48:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52996 * 109.47274 * 2 1 4 4 C 1.52997 * 109.47274 * 180.02562 * 3 2 1 5 5 C 1.53004 * 109.47307 * 305.00345 * 4 3 2 6 6 O 1.42900 * 109.46981 * 64.99935 * 4 3 2 7 7 C 1.52999 * 109.47286 * 185.00210 * 4 3 2 8 8 N 1.46500 * 109.47008 * 180.02562 * 7 4 3 9 9 C 1.34777 * 120.00130 * 180.02562 * 8 7 4 10 10 O 1.21730 * 119.99584 * 359.97438 * 9 8 7 11 11 C 1.46249 * 120.00284 * 180.02562 * 9 8 7 12 12 C 1.35031 * 120.00009 * 173.20941 * 11 9 8 13 13 C 1.46954 * 120.00022 * 348.68230 * 12 11 9 14 14 C 1.40025 * 120.09848 * 316.40988 * 13 12 11 15 15 C 1.37605 * 119.89108 * 179.69810 * 14 13 12 16 16 C 1.39173 * 120.10550 * 0.59382 * 15 14 13 17 17 O 1.35568 * 119.90030 * 179.69955 * 16 15 14 18 18 C 1.34788 * 117.00075 * 174.34233 * 17 16 15 19 19 H 1.07996 * 119.99644 * 5.05563 * 18 17 16 20 20 C 1.38715 * 120.00100 * 185.06530 * 18 17 16 21 21 N 1.31508 * 120.00220 * 180.02562 * 20 18 17 22 22 Si 1.86801 * 120.00040 * 359.97438 * 20 18 17 23 23 H 1.48500 * 109.47190 * 90.00461 * 22 20 18 24 24 H 1.48504 * 109.47075 * 210.00837 * 22 20 18 25 25 H 1.48505 * 109.47104 * 330.00619 * 22 20 18 26 26 C 1.39177 * 120.20269 * 359.68024 * 16 15 14 27 27 C 1.37602 * 120.09793 * 0.02562 * 26 16 15 28 28 H 1.09001 * 109.47754 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.47243 * 299.99861 * 1 2 3 30 30 H 1.09003 * 109.47102 * 59.99611 * 1 2 3 31 31 H 1.09000 * 109.46557 * 240.00025 * 2 1 3 32 32 H 1.09003 * 109.47102 * 120.00389 * 2 1 3 33 33 H 1.09007 * 109.46509 * 60.00290 * 3 2 1 34 34 H 1.08994 * 109.47235 * 300.00257 * 3 2 1 35 35 H 1.09004 * 109.47065 * 59.99805 * 5 4 3 36 36 H 1.09001 * 109.47320 * 179.97438 * 5 4 3 37 37 H 1.09002 * 109.47159 * 299.99960 * 5 4 3 38 38 H 0.96702 * 113.99740 * 60.00632 * 6 4 3 39 39 H 1.08996 * 109.47401 * 300.00236 * 7 4 3 40 40 H 1.09002 * 109.46944 * 60.00185 * 7 4 3 41 41 H 0.97001 * 120.00339 * 359.97438 * 8 7 4 42 42 H 1.07996 * 120.00430 * 353.20904 * 11 9 8 43 43 H 1.07994 * 119.99540 * 168.68124 * 12 11 9 44 44 H 1.07992 * 120.05471 * 359.97438 * 14 13 12 45 45 H 1.07998 * 119.94573 * 180.27381 * 15 14 13 46 46 H 0.96995 * 120.00489 * 179.97438 * 21 20 18 47 47 H 1.07997 * 119.95347 * 179.97438 * 26 16 15 48 48 H 1.08007 * 120.04537 * 180.02562 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4424 -0.0006 5 6 4.0805 0.6148 1.1806 6 8 4.0457 0.8732 -1.2220 7 6 4.0801 2.8794 0.1251 8 7 5.5450 2.8794 0.1239 9 6 6.2191 4.0421 0.2260 10 8 5.6104 5.0922 0.3187 11 6 7.6815 4.0421 0.2242 12 6 8.3566 5.2110 0.1880 13 6 7.6429 6.4632 -0.0989 14 6 6.6902 6.5094 -1.1241 15 6 6.0199 7.6825 -1.3850 16 6 6.2964 8.8250 -0.6400 17 8 5.6379 9.9801 -0.9046 18 6 5.8642 11.0175 -0.0743 19 1 6.6049 10.9321 0.7070 20 6 5.1456 12.1946 -0.2232 21 7 5.3667 13.2070 0.5865 22 14 3.8647 12.3423 -1.5749 23 1 2.5463 11.8946 -1.0586 24 1 3.7697 13.7577 -2.0142 25 1 4.2601 11.4921 -2.7265 26 6 7.2466 8.7853 0.3762 27 6 7.9175 7.6151 0.6482 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.8932 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 1.6766 1.9562 0.8901 34 1 1.6767 1.9563 -0.8899 35 1 3.7171 -0.4090 1.0910 36 1 5.1705 0.6144 1.1799 37 1 3.7176 1.0489 2.1123 38 1 3.7601 1.3479 -2.0146 39 1 3.7164 3.4691 -0.7163 40 1 3.7171 3.3135 1.0568 41 1 6.0300 2.0426 0.0504 42 1 8.2217 3.1074 0.2518 43 1 9.4210 5.2256 0.3699 44 1 6.4786 5.6247 -1.7061 45 1 5.2818 7.7179 -2.1726 46 1 4.8645 14.0302 0.4822 47 1 7.4583 9.6744 0.9515 48 1 8.6544 7.5851 1.4373 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000493184706.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:48:18 Heat of formation + Delta-G solvation = -97.286233 kcal Electronic energy + Delta-G solvation = -28076.126663 eV Core-core repulsion = 24096.306103 eV Total energy + Delta-G solvation = -3979.820560 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.22793 -40.63670 -39.60367 -38.20967 -35.38914 -35.07918 -34.64578 -34.08569 -32.00561 -31.86113 -29.90055 -28.12328 -27.55598 -27.00461 -24.28564 -23.60458 -22.70729 -22.06121 -21.28186 -20.48817 -19.71774 -19.15266 -18.19203 -17.70683 -16.75685 -16.67938 -16.44553 -16.22709 -16.01522 -15.71507 -15.64854 -15.47000 -15.17744 -14.85421 -14.63443 -14.38250 -14.26200 -14.12608 -14.10234 -13.73473 -13.53834 -13.28415 -13.11238 -12.92784 -12.69431 -12.66081 -12.61903 -12.50184 -12.28987 -12.14337 -11.96442 -11.57941 -11.38157 -11.34375 -11.07711 -10.91746 -10.63263 -10.45056 -10.03850 -9.59026 -8.61512 -8.52518 -6.23525 -0.03942 0.67612 1.08548 1.27890 1.34241 1.49328 2.26076 2.33379 2.47798 2.79252 3.04008 3.22230 3.32245 3.59098 3.81767 3.89316 3.98356 4.05596 4.12201 4.16146 4.19899 4.31681 4.52616 4.54441 4.57248 4.61311 4.69752 4.77272 4.82412 4.86573 4.93040 4.96657 4.99600 5.06229 5.17770 5.18452 5.21189 5.28019 5.39673 5.42769 5.44412 5.47386 5.53765 5.67092 5.77314 5.82366 5.89748 6.25638 6.69522 6.79187 6.81566 7.44579 7.57249 8.59103 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.012642 B = 0.002513 C = 0.002186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2214.272433 B =11139.947599 C =12805.506316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.116 4.116 3 C -0.143 4.143 4 C 0.134 3.866 5 C -0.143 4.143 6 O -0.561 6.561 7 C 0.096 3.904 8 N -0.708 5.708 9 C 0.525 3.475 10 O -0.569 6.569 11 C -0.227 4.227 12 C 0.001 3.999 13 C -0.151 4.151 14 C 0.012 3.988 15 C -0.209 4.209 16 C 0.133 3.867 17 O -0.244 6.244 18 C -0.401 4.401 19 H 0.082 0.918 20 C 0.011 3.989 21 N -0.921 5.921 22 Si 0.970 3.030 23 H -0.267 1.267 24 H -0.262 1.262 25 H -0.265 1.265 26 C -0.253 4.253 27 C -0.053 4.053 28 H 0.059 0.941 29 H 0.052 0.948 30 H 0.051 0.949 31 H 0.065 0.935 32 H 0.069 0.931 33 H 0.072 0.928 34 H 0.069 0.931 35 H 0.076 0.924 36 H 0.065 0.935 37 H 0.073 0.927 38 H 0.388 0.612 39 H 0.056 0.944 40 H 0.059 0.941 41 H 0.414 0.586 42 H 0.172 0.828 43 H 0.167 0.833 44 H 0.125 0.875 45 H 0.117 0.883 46 H 0.286 0.714 47 H 0.109 0.891 48 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.320 -31.764 -1.811 31.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.154 4.154 3 C -0.181 4.181 4 C 0.093 3.907 5 C -0.200 4.200 6 O -0.369 6.369 7 C -0.029 4.029 8 N -0.361 5.361 9 C 0.315 3.685 10 O -0.449 6.449 11 C -0.248 4.248 12 C -0.018 4.018 13 C -0.151 4.151 14 C -0.006 4.006 15 C -0.228 4.228 16 C 0.083 3.917 17 O -0.151 6.151 18 C -0.477 4.477 19 H 0.099 0.901 20 C -0.188 4.188 21 N -0.561 5.561 22 Si 0.792 3.208 23 H -0.192 1.192 24 H -0.187 1.187 25 H -0.189 1.189 26 C -0.272 4.272 27 C -0.071 4.071 28 H 0.078 0.922 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.084 0.916 32 H 0.087 0.913 33 H 0.091 0.909 34 H 0.088 0.912 35 H 0.095 0.905 36 H 0.084 0.916 37 H 0.092 0.908 38 H 0.237 0.763 39 H 0.075 0.925 40 H 0.078 0.922 41 H 0.251 0.749 42 H 0.189 0.811 43 H 0.185 0.815 44 H 0.143 0.857 45 H 0.135 0.865 46 H 0.095 0.905 47 H 0.127 0.873 48 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -1.711 -31.197 -1.449 31.277 hybrid contribution -0.739 1.072 -0.412 1.366 sum -2.450 -30.125 -1.861 30.281 Atomic orbital electron populations 1.21805 0.95782 1.01939 1.01739 1.21470 0.95609 0.95598 1.02694 1.22220 0.94009 0.98602 1.03296 1.21322 0.93130 0.89777 0.86497 1.21850 1.01993 1.00690 0.95503 1.86506 1.77243 1.57365 1.15778 1.21993 0.81028 0.98037 1.01863 1.45748 1.06706 1.09268 1.74365 1.19077 0.89814 0.83314 0.76259 1.90999 1.71265 1.32102 1.50565 1.23067 0.91709 1.00192 1.09812 1.22569 1.00282 0.89537 0.89457 1.18918 1.01814 0.94476 0.99907 1.20726 0.90827 0.94304 0.94778 1.20236 1.06318 0.91625 1.04654 1.19743 0.91632 0.86102 0.94196 1.83448 1.62356 1.18416 1.50900 1.20754 1.23243 0.91215 1.12476 0.90080 1.25291 0.99745 0.93570 1.00197 1.69700 1.42898 1.04773 1.38748 0.85233 0.78454 0.78081 0.79003 1.19245 1.18672 1.18904 1.21119 1.02906 1.00234 1.02971 1.21157 0.97451 0.90614 0.97872 0.92222 0.92864 0.92950 0.91636 0.91272 0.90939 0.91224 0.90548 0.91639 0.90766 0.76285 0.92525 0.92242 0.74867 0.81101 0.81542 0.85727 0.86481 0.90470 0.87296 0.83974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.58 9.91 71.98 0.71 -0.86 16 2 C -0.12 -1.20 5.34 30.59 0.16 -1.04 16 3 C -0.14 -1.64 4.48 30.59 0.14 -1.50 16 4 C 0.13 1.63 0.74 -10.79 -0.01 1.62 16 5 C -0.14 -1.54 8.18 71.98 0.59 -0.95 16 6 O -0.56 -6.69 12.26 -148.98 -1.83 -8.52 16 7 C 0.10 1.71 4.78 86.38 0.41 2.12 16 8 N -0.71 -12.52 5.14 -467.50 -2.41 -14.93 16 9 C 0.52 13.08 6.77 86.32 0.58 13.66 16 10 O -0.57 -20.45 12.17 -4.44 -0.05 -20.51 16 11 C -0.23 -4.27 9.90 23.61 0.23 -4.03 16 12 C 0.00 0.02 9.80 23.82 0.23 0.25 16 13 C -0.15 -5.06 4.54 -20.13 -0.09 -5.15 16 14 C 0.01 0.44 6.59 22.55 0.15 0.59 16 15 C -0.21 -9.28 9.97 22.34 0.22 -9.06 16 16 C 0.13 6.85 6.66 22.72 0.15 7.01 16 17 O -0.24 -14.24 8.57 -20.31 -0.17 -14.42 16 18 C -0.40 -24.85 9.94 67.93 0.68 -24.17 16 19 H 0.08 5.25 5.41 -2.91 -0.02 5.24 16 20 C 0.01 0.63 5.49 84.86 0.47 1.10 16 21 N -0.92 -56.57 13.96 21.62 0.30 -56.27 16 22 Si 0.97 47.37 28.62 68.60 1.96 49.34 16 23 H -0.27 -12.63 7.11 99.48 0.71 -11.92 16 24 H -0.26 -11.78 7.11 99.48 0.71 -11.07 16 25 H -0.26 -12.98 7.11 99.48 0.71 -12.28 16 26 C -0.25 -12.14 9.14 22.35 0.20 -11.93 16 27 C -0.05 -2.00 9.78 22.55 0.22 -1.78 16 28 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 29 H 0.05 0.55 8.14 -2.38 -0.02 0.53 16 30 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 31 H 0.06 0.72 7.82 -2.39 -0.02 0.71 16 32 H 0.07 0.67 6.35 -2.39 -0.02 0.65 16 33 H 0.07 0.88 8.14 -2.38 -0.02 0.86 16 34 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 35 H 0.08 0.75 6.35 -2.38 -0.02 0.73 16 36 H 0.06 0.66 6.86 -2.39 -0.02 0.65 16 37 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 38 H 0.39 3.01 9.05 -74.06 -0.67 2.34 16 39 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 40 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 41 H 0.41 5.12 7.17 -92.71 -0.66 4.45 16 42 H 0.17 1.63 8.06 -2.91 -0.02 1.61 16 43 H 0.17 2.39 8.06 -2.91 -0.02 2.37 16 44 H 0.12 4.01 7.02 -2.91 -0.02 3.99 16 45 H 0.12 4.94 8.06 -2.91 -0.02 4.91 16 46 H 0.29 16.02 8.31 -92.71 -0.77 15.25 16 47 H 0.11 5.63 5.62 -2.91 -0.02 5.62 16 48 H 0.14 4.33 8.06 -2.91 -0.02 4.31 16 Total: -1.00 -78.04 391.42 2.51 -75.53 By element: Atomic # 1 Polarization: 24.26 SS G_CDS: -0.35 Total: 23.91 kcal Atomic # 6 Polarization: -39.18 SS G_CDS: 5.06 Total: -34.13 kcal Atomic # 7 Polarization: -69.10 SS G_CDS: -2.10 Total: -71.20 kcal Atomic # 8 Polarization: -41.39 SS G_CDS: -2.05 Total: -43.45 kcal Atomic # 14 Polarization: 47.37 SS G_CDS: 1.96 Total: 49.34 kcal Total: -78.04 2.51 -75.53 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493184706.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.758 kcal (2) G-P(sol) polarization free energy of solvation -78.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.528 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds