Wall clock time and date at job start Tue Mar 31 2020 19:06:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.46990 * 2 1 4 4 C 1.52995 * 109.47275 * 239.99755 * 2 1 3 5 5 O 1.42893 * 109.47432 * 60.00123 * 4 2 1 6 6 C 1.53000 * 109.47156 * 119.99510 * 2 1 3 7 7 C 1.53008 * 109.46969 * 300.00682 * 6 2 1 8 8 N 1.46498 * 109.46632 * 179.97438 * 7 6 2 9 9 C 1.34785 * 119.99521 * 179.97438 * 8 7 6 10 10 O 1.21715 * 120.00261 * 359.97438 * 9 8 7 11 11 C 1.46255 * 119.99650 * 180.27579 * 9 8 7 12 12 C 1.35025 * 119.99918 * 172.93880 * 11 9 8 13 13 C 1.46960 * 119.99925 * 348.68186 * 12 11 9 14 14 C 1.40028 * 120.10009 * 316.40557 * 13 12 11 15 15 C 1.37594 * 119.89934 * 179.76739 * 14 13 12 16 16 C 1.39184 * 120.09927 * 0.50673 * 15 14 13 17 17 O 1.35570 * 119.89843 * 179.76454 * 16 15 14 18 18 C 1.34783 * 116.99886 * 174.33946 * 17 16 15 19 19 H 1.07998 * 119.99829 * 5.06153 * 18 17 16 20 20 C 1.38721 * 119.99912 * 185.05607 * 18 17 16 21 21 N 1.31504 * 120.00035 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 119.99732 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47098 * 90.00722 * 22 20 18 24 24 H 1.48507 * 109.46797 * 210.00341 * 22 20 18 25 25 H 1.48504 * 109.47379 * 330.00326 * 22 20 18 26 26 C 1.39177 * 120.19984 * 359.74795 * 16 15 14 27 27 C 1.37596 * 120.10326 * 359.97438 * 26 16 15 28 28 H 1.08993 * 109.47669 * 300.00381 * 1 2 3 29 29 H 1.09007 * 109.46693 * 60.00273 * 1 2 3 30 30 H 1.09003 * 109.47431 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.46929 * 179.97438 * 3 2 1 32 32 H 1.09007 * 109.47180 * 299.99429 * 3 2 1 33 33 H 1.08995 * 109.47501 * 59.99813 * 3 2 1 34 34 H 1.09004 * 109.47004 * 180.02562 * 4 2 1 35 35 H 1.08998 * 109.46965 * 299.99909 * 4 2 1 36 36 H 0.96702 * 114.00442 * 180.02562 * 5 4 2 37 37 H 1.08992 * 109.47168 * 180.02562 * 6 2 1 38 38 H 1.09003 * 109.46680 * 59.99871 * 6 2 1 39 39 H 1.08992 * 109.47442 * 59.99841 * 7 6 2 40 40 H 1.09003 * 109.46758 * 299.99142 * 7 6 2 41 41 H 0.96995 * 120.00513 * 359.97438 * 8 7 6 42 42 H 1.08005 * 120.00497 * 352.93596 * 11 9 8 43 43 H 1.08000 * 120.00300 * 168.68630 * 12 11 9 44 44 H 1.08007 * 120.05004 * 0.02562 * 14 13 12 45 45 H 1.07995 * 119.95777 * 180.23340 * 15 14 13 46 46 H 0.96998 * 119.99874 * 179.97438 * 21 20 18 47 47 H 1.07998 * 119.94407 * 179.97438 * 26 16 15 48 48 H 1.08004 * 120.04756 * 180.02562 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 8 1.5638 -0.0478 -2.4160 6 6 2.0400 -0.7211 1.2493 7 6 1.5298 0.0002 2.4985 8 7 2.0177 -0.6907 3.6947 9 6 1.6923 -0.2300 4.9188 10 8 0.9935 0.7604 5.0304 11 6 2.1843 -0.9162 6.1130 12 6 1.9796 -0.3771 7.3339 13 6 1.4906 1.0035 7.4550 14 6 2.0296 2.0127 6.6477 15 6 1.5653 3.3030 6.7611 16 6 0.5689 3.6077 7.6839 17 8 0.1178 4.8813 7.7956 18 6 -0.9267 5.0902 8.6214 19 1 -1.3130 4.2783 9.2196 20 6 -1.5054 6.3483 8.7031 21 7 -1.0353 7.3369 7.9744 22 14 -2.9526 6.6381 9.8482 23 1 -2.4520 7.0548 11.1828 24 1 -3.8199 7.7061 9.2892 25 1 -3.7362 5.3838 9.9828 26 6 0.0340 2.6088 8.4921 27 6 0.4881 1.3147 8.3816 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3634 -1.0277 0.0005 31 1 3.1300 1.4425 0.0005 32 1 1.6767 1.9564 -0.8901 33 1 1.6766 1.9564 0.8899 34 1 3.1300 -0.7216 -1.2489 35 1 1.6767 -1.7489 -1.2491 36 1 1.8488 -0.4515 -3.2471 37 1 3.1299 -0.7207 1.2495 38 1 1.6766 -1.7488 1.2493 39 1 0.4399 0.0001 2.4985 40 1 1.8932 1.0278 2.4985 41 1 2.5748 -1.4797 3.6058 42 1 2.7113 -1.8541 6.0183 43 1 2.1753 -0.9604 8.2215 44 1 2.8056 1.7779 5.9342 45 1 1.9777 4.0814 6.1364 46 1 -1.4402 8.2165 8.0312 47 1 -0.7388 2.8499 9.2070 48 1 0.0721 0.5401 9.0089 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000493646357.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:06:31 Heat of formation + Delta-G solvation = -74.226250 kcal Electronic energy + Delta-G solvation = -27921.806029 eV Core-core repulsion = 23942.985425 eV Total energy + Delta-G solvation = -3978.820604 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -39.82565 -38.97323 -38.50993 -36.60495 -35.93035 -34.01536 -33.01058 -32.10025 -30.08822 -29.37315 -27.75246 -27.46840 -26.86447 -25.41978 -23.94596 -22.29858 -21.72943 -20.88857 -19.55008 -18.70707 -17.90481 -17.70990 -17.07060 -16.60110 -16.11472 -15.70543 -15.25134 -14.78589 -14.58261 -14.49749 -14.15334 -14.05646 -13.90827 -13.58169 -13.41101 -13.14114 -13.00573 -12.83650 -12.81882 -12.48494 -12.14736 -12.09829 -11.96008 -11.67155 -11.49612 -11.34079 -11.08785 -11.01618 -10.95673 -10.65782 -10.64740 -10.59076 -10.38906 -10.32292 -9.46542 -9.38364 -9.12893 -8.89245 -8.66797 -7.88925 -6.83251 -6.43257 -3.98933 1.27741 2.45519 2.73439 3.15292 3.16930 3.21196 3.30225 3.68420 3.90805 3.99398 4.43366 4.46260 4.72430 4.73646 4.92574 4.95861 5.06961 5.12274 5.18069 5.21482 5.25760 5.33816 5.36179 5.38658 5.61580 5.63093 5.74931 5.76322 5.76855 5.79535 5.86875 5.87915 5.96765 6.18505 6.21547 6.28172 6.36247 6.46778 6.58497 6.63198 6.82104 7.06714 7.15272 7.26390 7.39405 7.48193 7.53377 7.71388 7.95389 8.03582 8.59204 9.02448 9.74706 10.74687 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.012373 B = 0.002402 C = 0.002105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2262.408027 B =11655.564133 C =13301.383895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.059 4.059 3 C -0.144 4.144 4 C 0.087 3.913 5 O -0.568 6.568 6 C -0.120 4.120 7 C 0.118 3.882 8 N -0.738 5.738 9 C 0.537 3.463 10 O -0.511 6.511 11 C -0.267 4.267 12 C 0.027 3.973 13 C -0.190 4.190 14 C 0.013 3.987 15 C -0.203 4.203 16 C 0.171 3.829 17 O -0.173 6.173 18 C -0.390 4.390 19 H 0.094 0.906 20 C 0.039 3.961 21 N -0.860 5.860 22 Si 0.942 3.058 23 H -0.273 1.273 24 H -0.277 1.277 25 H -0.267 1.267 26 C -0.251 4.251 27 C -0.042 4.042 28 H 0.062 0.938 29 H 0.064 0.936 30 H 0.051 0.949 31 H 0.052 0.948 32 H 0.064 0.936 33 H 0.062 0.938 34 H 0.044 0.956 35 H 0.044 0.956 36 H 0.377 0.623 37 H 0.069 0.931 38 H 0.069 0.931 39 H 0.069 0.931 40 H 0.071 0.929 41 H 0.394 0.606 42 H 0.120 0.880 43 H 0.121 0.879 44 H 0.101 0.899 45 H 0.113 0.887 46 H 0.270 0.730 47 H 0.126 0.874 48 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.232 -20.149 -13.979 25.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.060 4.060 3 C -0.201 4.201 4 C 0.009 3.991 5 O -0.373 6.373 6 C -0.158 4.158 7 C -0.005 4.005 8 N -0.392 5.392 9 C 0.327 3.673 10 O -0.387 6.387 11 C -0.289 4.289 12 C 0.007 3.993 13 C -0.191 4.191 14 C -0.006 4.006 15 C -0.222 4.222 16 C 0.117 3.883 17 O -0.075 6.075 18 C -0.466 4.466 19 H 0.111 0.889 20 C -0.166 4.166 21 N -0.495 5.495 22 Si 0.766 3.234 23 H -0.199 1.199 24 H -0.202 1.202 25 H -0.191 1.191 26 C -0.270 4.270 27 C -0.060 4.060 28 H 0.081 0.919 29 H 0.083 0.917 30 H 0.070 0.930 31 H 0.071 0.929 32 H 0.083 0.917 33 H 0.081 0.919 34 H 0.063 0.937 35 H 0.062 0.938 36 H 0.223 0.777 37 H 0.088 0.912 38 H 0.087 0.913 39 H 0.087 0.913 40 H 0.089 0.911 41 H 0.227 0.773 42 H 0.138 0.862 43 H 0.139 0.861 44 H 0.119 0.881 45 H 0.131 0.869 46 H 0.080 0.920 47 H 0.143 0.857 48 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 7.440 -18.529 -13.595 24.156 hybrid contribution -0.170 -0.874 0.005 0.891 sum 7.270 -19.403 -13.590 24.780 Atomic orbital electron populations 1.21888 0.93665 1.01774 1.02726 1.20475 0.96838 0.96329 0.92339 1.21893 1.00587 0.94847 1.02773 1.22192 0.96976 0.94469 0.85437 1.86492 1.77519 1.57340 1.15958 1.21772 1.01114 0.99536 0.93379 1.21384 0.99698 0.96594 0.82837 1.45994 1.54861 1.32489 1.05808 1.18496 0.81129 0.84302 0.83399 1.91001 1.37030 1.24666 1.85965 1.22600 1.10520 1.02858 0.92881 1.22331 0.87986 0.92980 0.95975 1.18290 1.04686 0.92094 1.03981 1.20435 0.96091 0.91227 0.92819 1.20004 1.02445 0.96811 1.02939 1.19527 0.91856 0.84997 0.91968 1.83906 1.44205 1.21131 1.58284 1.21394 1.07970 0.97148 1.20058 0.88899 1.25324 0.98817 0.94510 0.97939 1.70022 1.40121 1.01624 1.37698 0.85701 0.79729 0.78696 0.79249 1.19850 1.20231 1.19140 1.20949 1.06969 0.93201 1.05900 1.20738 0.94735 0.95282 0.95249 0.91930 0.91716 0.92972 0.92898 0.91712 0.91866 0.93748 0.93799 0.77670 0.91184 0.91259 0.91270 0.91108 0.77314 0.86231 0.86122 0.88128 0.86862 0.91971 0.85665 0.87632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.33 7.98 37.16 0.30 -1.03 16 2 C -0.06 -0.49 0.63 -154.51 -0.10 -0.59 16 3 C -0.14 -1.36 7.98 37.16 0.30 -1.06 16 4 C 0.09 0.59 5.91 37.16 0.22 0.81 16 5 O -0.57 -4.29 12.31 -35.23 -0.43 -4.72 16 6 C -0.12 -0.90 4.38 -26.73 -0.12 -1.01 16 7 C 0.12 1.28 4.97 -4.04 -0.02 1.26 16 8 N -0.74 -8.07 5.55 -61.75 -0.34 -8.41 16 9 C 0.54 8.00 6.77 -13.04 -0.09 7.91 16 10 O -0.51 -10.12 12.17 5.18 0.06 -10.06 16 11 C -0.27 -3.39 9.90 -37.50 -0.37 -3.76 16 12 C 0.03 0.38 9.80 -37.19 -0.36 0.02 16 13 C -0.19 -3.56 4.54 -105.03 -0.48 -4.04 16 14 C 0.01 0.26 6.59 -39.15 -0.26 0.00 16 15 C -0.20 -4.74 9.97 -39.47 -0.39 -5.13 16 16 C 0.17 4.43 6.66 -38.88 -0.26 4.17 16 17 O -0.17 -5.15 9.74 0.74 0.01 -5.14 16 18 C -0.39 -11.23 9.48 30.91 0.29 -10.94 16 19 H 0.09 2.48 5.18 -52.49 -0.27 2.21 16 20 C 0.04 1.09 5.49 -17.51 -0.10 0.99 16 21 N -0.86 -25.78 13.67 55.48 0.76 -25.02 16 22 Si 0.94 20.98 29.55 -169.99 -5.02 15.95 16 23 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 24 H -0.28 -6.04 7.11 56.52 0.40 -5.63 16 25 H -0.27 -5.74 7.11 56.52 0.40 -5.33 16 26 C -0.25 -5.82 9.14 -39.47 -0.36 -6.18 16 27 C -0.04 -0.82 9.78 -39.15 -0.38 -1.21 16 28 H 0.06 0.64 6.43 -51.93 -0.33 0.31 16 29 H 0.06 0.65 7.68 -51.92 -0.40 0.25 16 30 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 31 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.06 0.66 7.68 -51.92 -0.40 0.26 16 33 H 0.06 0.67 6.43 -51.93 -0.33 0.33 16 34 H 0.04 0.26 8.14 -51.93 -0.42 -0.16 16 35 H 0.04 0.25 8.14 -51.93 -0.42 -0.17 16 36 H 0.38 1.18 9.12 45.56 0.42 1.60 16 37 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 38 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.07 0.86 6.43 -51.93 -0.33 0.53 16 40 H 0.07 0.89 6.43 -51.93 -0.33 0.55 16 41 H 0.39 2.98 8.45 -40.82 -0.34 2.63 16 42 H 0.12 1.06 8.06 -52.48 -0.42 0.64 16 43 H 0.12 1.32 8.06 -52.49 -0.42 0.90 16 44 H 0.10 1.87 7.02 -52.48 -0.37 1.50 16 45 H 0.11 2.59 8.06 -52.49 -0.42 2.16 16 46 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 47 H 0.13 2.87 5.62 -52.49 -0.29 2.57 16 48 H 0.11 1.74 8.06 -52.48 -0.42 1.32 16 LS Contribution 390.18 15.07 5.88 5.88 Total: -1.00 -35.53 390.18 -7.63 -43.16 By element: Atomic # 1 Polarization: 14.51 SS G_CDS: -6.36 Total: 8.15 kcal Atomic # 6 Polarization: -17.61 SS G_CDS: -2.18 Total: -19.79 kcal Atomic # 7 Polarization: -33.85 SS G_CDS: 0.42 Total: -33.43 kcal Atomic # 8 Polarization: -19.56 SS G_CDS: -0.36 Total: -19.92 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.95 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -35.53 -7.63 -43.16 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493646357.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.065 kcal (2) G-P(sol) polarization free energy of solvation -35.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.161 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds