Wall clock time and date at job start Tue Mar 31 2020 19:06:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.46990 * 2 1 4 4 C 1.52995 * 109.47275 * 239.99755 * 2 1 3 5 5 O 1.42893 * 109.47432 * 60.00123 * 4 2 1 6 6 C 1.53000 * 109.47156 * 119.99510 * 2 1 3 7 7 C 1.53008 * 109.46969 * 300.00682 * 6 2 1 8 8 N 1.46498 * 109.46632 * 179.97438 * 7 6 2 9 9 C 1.34785 * 119.99521 * 179.97438 * 8 7 6 10 10 O 1.21715 * 120.00261 * 359.97438 * 9 8 7 11 11 C 1.46255 * 119.99650 * 180.27579 * 9 8 7 12 12 C 1.35025 * 119.99918 * 172.93880 * 11 9 8 13 13 C 1.46960 * 119.99925 * 348.68186 * 12 11 9 14 14 C 1.40028 * 120.10009 * 316.40557 * 13 12 11 15 15 C 1.37594 * 119.89934 * 179.76739 * 14 13 12 16 16 C 1.39184 * 120.09927 * 0.50673 * 15 14 13 17 17 O 1.35570 * 119.89843 * 179.76454 * 16 15 14 18 18 C 1.34783 * 116.99886 * 174.33946 * 17 16 15 19 19 H 1.07998 * 119.99829 * 5.06153 * 18 17 16 20 20 C 1.38721 * 119.99912 * 185.05607 * 18 17 16 21 21 N 1.31504 * 120.00035 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 119.99732 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47098 * 90.00722 * 22 20 18 24 24 H 1.48507 * 109.46797 * 210.00341 * 22 20 18 25 25 H 1.48504 * 109.47379 * 330.00326 * 22 20 18 26 26 C 1.39177 * 120.19984 * 359.74795 * 16 15 14 27 27 C 1.37596 * 120.10326 * 359.97438 * 26 16 15 28 28 H 1.08993 * 109.47669 * 300.00381 * 1 2 3 29 29 H 1.09007 * 109.46693 * 60.00273 * 1 2 3 30 30 H 1.09003 * 109.47431 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.46929 * 179.97438 * 3 2 1 32 32 H 1.09007 * 109.47180 * 299.99429 * 3 2 1 33 33 H 1.08995 * 109.47501 * 59.99813 * 3 2 1 34 34 H 1.09004 * 109.47004 * 180.02562 * 4 2 1 35 35 H 1.08998 * 109.46965 * 299.99909 * 4 2 1 36 36 H 0.96702 * 114.00442 * 180.02562 * 5 4 2 37 37 H 1.08992 * 109.47168 * 180.02562 * 6 2 1 38 38 H 1.09003 * 109.46680 * 59.99871 * 6 2 1 39 39 H 1.08992 * 109.47442 * 59.99841 * 7 6 2 40 40 H 1.09003 * 109.46758 * 299.99142 * 7 6 2 41 41 H 0.96995 * 120.00513 * 359.97438 * 8 7 6 42 42 H 1.08005 * 120.00497 * 352.93596 * 11 9 8 43 43 H 1.08000 * 120.00300 * 168.68630 * 12 11 9 44 44 H 1.08007 * 120.05004 * 0.02562 * 14 13 12 45 45 H 1.07995 * 119.95777 * 180.23340 * 15 14 13 46 46 H 0.96998 * 119.99874 * 179.97438 * 21 20 18 47 47 H 1.07998 * 119.94407 * 179.97438 * 26 16 15 48 48 H 1.08004 * 120.04756 * 180.02562 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 8 1.5638 -0.0478 -2.4160 6 6 2.0400 -0.7211 1.2493 7 6 1.5298 0.0002 2.4985 8 7 2.0177 -0.6907 3.6947 9 6 1.6923 -0.2300 4.9188 10 8 0.9935 0.7604 5.0304 11 6 2.1843 -0.9162 6.1130 12 6 1.9796 -0.3771 7.3339 13 6 1.4906 1.0035 7.4550 14 6 2.0296 2.0127 6.6477 15 6 1.5653 3.3030 6.7611 16 6 0.5689 3.6077 7.6839 17 8 0.1178 4.8813 7.7956 18 6 -0.9267 5.0902 8.6214 19 1 -1.3130 4.2783 9.2196 20 6 -1.5054 6.3483 8.7031 21 7 -1.0353 7.3369 7.9744 22 14 -2.9526 6.6381 9.8482 23 1 -2.4520 7.0548 11.1828 24 1 -3.8199 7.7061 9.2892 25 1 -3.7362 5.3838 9.9828 26 6 0.0340 2.6088 8.4921 27 6 0.4881 1.3147 8.3816 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3634 -1.0277 0.0005 31 1 3.1300 1.4425 0.0005 32 1 1.6767 1.9564 -0.8901 33 1 1.6766 1.9564 0.8899 34 1 3.1300 -0.7216 -1.2489 35 1 1.6767 -1.7489 -1.2491 36 1 1.8488 -0.4515 -3.2471 37 1 3.1299 -0.7207 1.2495 38 1 1.6766 -1.7488 1.2493 39 1 0.4399 0.0001 2.4985 40 1 1.8932 1.0278 2.4985 41 1 2.5748 -1.4797 3.6058 42 1 2.7113 -1.8541 6.0183 43 1 2.1753 -0.9604 8.2215 44 1 2.8056 1.7779 5.9342 45 1 1.9777 4.0814 6.1364 46 1 -1.4402 8.2165 8.0312 47 1 -0.7388 2.8499 9.2070 48 1 0.0721 0.5401 9.0089 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000493646357.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:06:30 Heat of formation + Delta-G solvation = -101.069382 kcal Electronic energy + Delta-G solvation = -27922.970034 eV Core-core repulsion = 23942.985425 eV Total energy + Delta-G solvation = -3979.984609 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.11969 -40.44425 -39.49731 -38.19185 -36.75492 -35.02416 -34.58524 -33.90218 -31.82141 -30.45714 -29.13676 -28.24905 -27.53653 -27.37951 -25.02161 -23.64793 -23.30840 -22.28121 -20.70309 -19.83767 -19.49049 -18.83988 -18.30303 -17.88720 -17.14057 -16.59862 -16.37956 -16.26606 -15.96469 -15.87708 -15.57338 -15.34855 -15.08922 -14.83216 -14.72466 -14.53253 -14.29511 -14.11556 -13.72676 -13.67042 -13.60409 -13.53361 -13.02415 -12.81552 -12.78199 -12.64710 -12.35490 -12.26932 -12.22395 -12.12522 -11.80766 -11.70413 -11.31396 -11.24257 -10.95534 -10.81501 -10.65486 -10.38062 -9.98155 -9.55741 -8.55162 -8.48759 -6.16250 0.00835 0.71501 1.13400 1.32696 1.45025 1.51587 2.16699 2.37007 2.51312 2.86807 3.20522 3.36742 3.52510 3.78032 3.78885 4.02812 4.09197 4.11330 4.16347 4.19345 4.22950 4.28687 4.48719 4.54724 4.60787 4.61870 4.66183 4.69600 4.77330 4.81988 4.97033 4.97909 5.05842 5.06113 5.09786 5.11758 5.18988 5.26508 5.27861 5.40941 5.44533 5.47756 5.60007 5.68297 5.72548 5.85800 6.02087 6.25380 6.76638 6.94884 6.97370 7.49664 7.77327 8.74425 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.012373 B = 0.002402 C = 0.002105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2262.408027 B =11655.564133 C =13301.383895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.061 4.061 3 C -0.142 4.142 4 C 0.089 3.911 5 O -0.592 6.592 6 C -0.106 4.106 7 C 0.118 3.882 8 N -0.715 5.715 9 C 0.522 3.478 10 O -0.571 6.571 11 C -0.229 4.229 12 C 0.003 3.997 13 C -0.160 4.160 14 C 0.015 3.985 15 C -0.222 4.222 16 C 0.126 3.874 17 O -0.232 6.232 18 C -0.415 4.415 19 H 0.103 0.897 20 C -0.025 4.025 21 N -0.922 5.922 22 Si 1.022 2.978 23 H -0.259 1.259 24 H -0.270 1.270 25 H -0.253 1.253 26 C -0.259 4.259 27 C -0.048 4.048 28 H 0.042 0.958 29 H 0.051 0.949 30 H 0.064 0.936 31 H 0.062 0.938 32 H 0.051 0.949 33 H 0.041 0.959 34 H 0.059 0.941 35 H 0.061 0.939 36 H 0.395 0.605 37 H 0.090 0.910 38 H 0.092 0.908 39 H 0.048 0.952 40 H 0.047 0.953 41 H 0.416 0.584 42 H 0.177 0.823 43 H 0.170 0.830 44 H 0.119 0.881 45 H 0.099 0.901 46 H 0.273 0.727 47 H 0.120 0.880 48 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.582 -25.840 -13.968 30.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.062 4.062 3 C -0.200 4.200 4 C 0.012 3.988 5 O -0.400 6.400 6 C -0.144 4.144 7 C -0.006 4.006 8 N -0.368 5.368 9 C 0.312 3.688 10 O -0.452 6.452 11 C -0.249 4.249 12 C -0.017 4.017 13 C -0.161 4.161 14 C -0.004 4.004 15 C -0.242 4.242 16 C 0.075 3.925 17 O -0.138 6.138 18 C -0.491 4.491 19 H 0.120 0.880 20 C -0.222 4.222 21 N -0.560 5.560 22 Si 0.841 3.159 23 H -0.184 1.184 24 H -0.195 1.195 25 H -0.177 1.177 26 C -0.279 4.279 27 C -0.066 4.066 28 H 0.061 0.939 29 H 0.070 0.930 30 H 0.083 0.917 31 H 0.081 0.919 32 H 0.070 0.930 33 H 0.060 0.940 34 H 0.078 0.922 35 H 0.079 0.921 36 H 0.245 0.755 37 H 0.108 0.892 38 H 0.110 0.890 39 H 0.067 0.933 40 H 0.065 0.935 41 H 0.254 0.746 42 H 0.194 0.806 43 H 0.187 0.813 44 H 0.136 0.864 45 H 0.117 0.883 46 H 0.082 0.918 47 H 0.138 0.862 48 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 8.859 -24.339 -13.633 29.270 hybrid contribution -0.351 0.445 -0.292 0.638 sum 8.508 -23.894 -13.925 28.935 Atomic orbital electron populations 1.21853 0.94861 1.02039 1.01099 1.20504 0.95875 0.95700 0.94098 1.21862 1.01144 0.95869 1.01077 1.22181 0.97766 0.94668 0.84221 1.86451 1.78027 1.58295 1.17216 1.21677 1.02171 0.99811 0.90707 1.21349 0.98602 0.96175 0.84466 1.45822 1.53686 1.32536 1.04767 1.19179 0.80582 0.83807 0.85229 1.91011 1.39800 1.27412 1.86928 1.23086 1.07218 1.03813 0.90784 1.22582 0.89637 0.90799 0.98653 1.18894 1.01931 0.94553 1.00679 1.20663 0.96309 0.90206 0.93178 1.20183 1.02782 0.98258 1.02959 1.20011 0.93472 0.84963 0.94022 1.83875 1.46014 1.23340 1.60561 1.21892 1.08575 0.98059 1.20601 0.88010 1.26694 1.01997 0.93746 0.99809 1.70178 1.42698 1.02345 1.40756 0.84547 0.75413 0.79035 0.76912 1.18365 1.19489 1.17700 1.21095 1.06943 0.94378 1.05451 1.21191 0.94668 0.94633 0.96126 0.93927 0.92986 0.91684 0.91866 0.92984 0.93992 0.92241 0.92084 0.75528 0.89176 0.88991 0.93318 0.93486 0.74630 0.80600 0.81293 0.86355 0.88255 0.91761 0.86225 0.83368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.58 7.98 71.98 0.57 -2.01 16 2 C -0.06 -0.92 0.63 -52.18 -0.03 -0.95 16 3 C -0.14 -2.71 7.98 71.98 0.57 -2.14 16 4 C 0.09 0.95 5.91 71.98 0.43 1.38 16 5 O -0.59 -7.94 12.31 -148.98 -1.83 -9.77 16 6 C -0.11 -1.25 4.38 30.60 0.13 -1.12 16 7 C 0.12 2.40 4.97 86.38 0.43 2.83 16 8 N -0.72 -13.03 5.55 -467.49 -2.60 -15.62 16 9 C 0.52 13.80 6.77 86.32 0.58 14.38 16 10 O -0.57 -22.25 12.17 -4.40 -0.05 -22.31 16 11 C -0.23 -4.36 9.90 23.62 0.23 -4.13 16 12 C 0.00 0.06 9.80 23.82 0.23 0.29 16 13 C -0.16 -5.62 4.54 -20.13 -0.09 -5.72 16 14 C 0.01 0.60 6.59 22.55 0.15 0.75 16 15 C -0.22 -11.13 9.97 22.35 0.22 -10.90 16 16 C 0.13 7.01 6.66 22.72 0.15 7.17 16 17 O -0.23 -15.10 9.74 -20.28 -0.20 -15.30 16 18 C -0.42 -25.73 9.48 67.94 0.64 -25.08 16 19 H 0.10 5.79 5.18 -2.91 -0.02 5.78 16 20 C -0.03 -1.51 5.49 84.86 0.47 -1.04 16 21 N -0.92 -59.31 13.67 21.62 0.30 -59.01 16 22 Si 1.02 44.87 29.55 68.60 2.03 46.89 16 23 H -0.26 -10.65 7.11 99.48 0.71 -9.94 16 24 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 25 H -0.25 -10.37 7.11 99.48 0.71 -9.67 16 26 C -0.26 -12.47 9.14 22.34 0.20 -12.26 16 27 C -0.05 -1.83 9.78 22.55 0.22 -1.61 16 28 H 0.04 0.93 6.43 -2.39 -0.02 0.91 16 29 H 0.05 1.07 7.68 -2.38 -0.02 1.05 16 30 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 31 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 32 H 0.05 1.10 7.68 -2.38 -0.02 1.09 16 33 H 0.04 0.95 6.43 -2.39 -0.02 0.94 16 34 H 0.06 0.47 8.14 -2.39 -0.02 0.45 16 35 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 36 H 0.40 1.69 9.12 -74.06 -0.68 1.01 16 37 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 38 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 39 H 0.05 1.22 6.43 -2.39 -0.02 1.20 16 40 H 0.05 1.20 6.43 -2.39 -0.02 1.19 16 41 H 0.42 3.93 8.45 -92.71 -0.78 3.15 16 42 H 0.18 1.53 8.06 -2.91 -0.02 1.50 16 43 H 0.17 2.39 8.06 -2.91 -0.02 2.37 16 44 H 0.12 4.29 7.02 -2.91 -0.02 4.27 16 45 H 0.10 5.04 8.06 -2.91 -0.02 5.01 16 46 H 0.27 16.02 8.31 -92.71 -0.77 15.25 16 47 H 0.12 5.74 5.62 -2.91 -0.02 5.72 16 48 H 0.15 4.32 8.06 -2.91 -0.02 4.30 16 Total: -1.00 -88.75 390.18 2.30 -86.45 By element: Atomic # 1 Polarization: 29.30 SS G_CDS: -0.47 Total: 28.83 kcal Atomic # 6 Polarization: -45.29 SS G_CDS: 5.12 Total: -40.17 kcal Atomic # 7 Polarization: -72.33 SS G_CDS: -2.30 Total: -74.63 kcal Atomic # 8 Polarization: -45.29 SS G_CDS: -2.09 Total: -47.38 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 2.03 Total: 46.89 kcal Total: -88.75 2.30 -86.45 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493646357.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.615 kcal (2) G-P(sol) polarization free energy of solvation -88.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.454 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds