Wall clock time and date at job start Tue Mar 31 2020 18:02:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.53004 * 110.39148 * 2 1 4 4 O 1.42898 * 109.47214 * 302.23403 * 3 2 1 5 5 C 1.54398 * 110.34332 * 237.76942 * 2 1 3 6 6 N 1.48142 * 104.61594 * 217.26157 * 5 2 1 7 7 C 1.34778 * 127.83863 * 219.58150 * 6 5 2 8 8 O 1.21583 * 120.00166 * 174.08499 * 7 6 5 9 9 C 1.47644 * 119.99927 * 354.09283 * 7 6 5 10 10 C 1.40010 * 119.89265 * 337.22552 * 9 7 6 11 11 C 1.36317 * 120.10650 * 179.71798 * 10 9 7 12 12 C 1.40886 * 119.88941 * 0.57961 * 11 10 9 13 13 C 1.41112 * 120.10645 * 179.67379 * 12 11 10 14 14 H 1.07994 * 120.00196 * 153.90353 * 13 12 11 15 15 C 1.40227 * 119.99823 * 333.90807 * 13 12 11 16 16 N 1.30654 * 120.00026 * 340.80341 * 15 13 12 17 17 Si 1.86797 * 120.00163 * 160.79706 * 15 13 12 18 18 H 1.48501 * 109.47077 * 94.76035 * 17 15 13 19 19 H 1.48499 * 109.47396 * 214.75991 * 17 15 13 20 20 H 1.48499 * 109.47425 * 334.76457 * 17 15 13 21 21 C 1.40885 * 119.79439 * 359.69310 * 12 11 10 22 22 C 1.36319 * 119.89271 * 0.02562 * 21 12 11 23 23 C 1.48149 * 104.32564 * 39.58578 * 6 5 2 24 24 C 1.54287 * 110.34374 * 122.23633 * 2 1 3 25 25 C 1.52996 * 110.34146 * 359.97438 * 24 2 1 26 26 C 1.53004 * 110.34138 * 237.84851 * 24 2 1 27 27 O 1.42904 * 109.47143 * 179.97438 * 26 24 2 28 28 H 1.09009 * 109.47160 * 297.76791 * 1 2 3 29 29 H 1.09002 * 109.47347 * 57.76994 * 1 2 3 30 30 H 1.09000 * 109.47649 * 177.76483 * 1 2 3 31 31 H 1.09003 * 109.46695 * 62.22949 * 3 2 1 32 32 H 1.08996 * 109.47489 * 182.22776 * 3 2 1 33 33 H 0.96692 * 114.00079 * 179.97438 * 4 3 2 34 34 H 1.08995 * 110.40284 * 336.04967 * 5 2 1 35 35 H 1.09001 * 110.40057 * 98.47854 * 5 2 1 36 36 H 1.07998 * 119.94669 * 0.02562 * 10 9 7 37 37 H 1.08001 * 120.05711 * 180.29090 * 11 10 9 38 38 H 0.96998 * 119.99920 * 180.02562 * 16 15 13 39 39 H 1.08004 * 120.05422 * 180.02562 * 21 12 11 40 40 H 1.07996 * 119.94687 * 179.97438 * 22 21 12 41 41 H 1.09000 * 110.41167 * 201.62472 * 23 6 5 42 42 H 1.09003 * 110.50507 * 79.24897 * 23 6 5 43 43 H 1.08997 * 109.47484 * 60.00413 * 25 24 2 44 44 H 1.09003 * 109.47376 * 180.02562 * 25 24 2 45 45 H 1.09004 * 109.47210 * 299.99920 * 25 24 2 46 46 H 1.09003 * 109.47291 * 299.99565 * 26 24 2 47 47 H 1.08999 * 109.47684 * 59.99525 * 26 24 2 48 48 H 0.96700 * 113.99931 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0630 1.4342 0.0000 4 8 1.5554 2.1310 -1.1396 5 6 2.0667 -0.7721 -1.2246 6 7 3.2663 -1.4817 -0.7227 7 6 4.4424 -1.6664 -1.3546 8 8 5.3742 -2.1807 -0.7668 9 6 4.5992 -1.2442 -2.7607 10 6 3.4707 -1.1065 -3.5779 11 6 3.6100 -0.7114 -4.8751 12 6 4.8931 -0.4532 -5.3965 13 6 5.0431 -0.0506 -6.7406 14 1 5.9002 0.5362 -7.0361 15 6 4.0792 -0.4125 -7.6926 16 7 3.2638 -1.4046 -7.4521 17 14 3.9609 0.5240 -9.3046 18 1 4.7487 -0.1825 -10.3464 19 1 2.5397 0.6036 -9.7277 20 1 4.5004 1.8953 -9.1212 21 6 6.0261 -0.5987 -4.5719 22 6 5.8764 -0.9887 -3.2743 23 6 2.8801 -1.9422 0.6314 24 6 2.0663 -0.7716 1.2236 25 6 0.9061 -1.3031 2.0676 26 6 2.9670 0.1313 2.0688 27 8 3.4525 -0.6008 3.1960 28 1 -0.3634 0.4788 0.9094 29 1 -0.3634 0.5481 -0.8693 30 1 -0.3634 -1.0268 -0.0401 31 1 1.7408 1.9415 0.9093 32 1 3.1521 1.4170 -0.0399 33 1 1.8528 3.0488 -1.2040 34 1 1.3234 -1.4860 -1.5794 35 1 2.3400 -0.0794 -2.0206 36 1 2.4879 -1.3089 -3.1785 37 1 2.7386 -0.6009 -5.5035 38 1 2.5973 -1.6551 -8.1108 39 1 7.0117 -0.4015 -4.9671 40 1 6.7443 -1.1009 -2.6415 41 1 3.7671 -2.1326 1.2356 42 1 2.2645 -2.8396 0.5683 43 1 0.2953 -1.9744 1.4640 44 1 1.3005 -1.8448 2.9274 45 1 0.2960 -0.4685 2.4132 46 1 3.8091 0.4713 1.4660 47 1 2.3962 0.9932 2.4143 48 1 4.0319 -0.0895 3.7773 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000529962943.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:02:43 Heat of formation + Delta-G solvation = -129.293955 kcal Electronic energy + Delta-G solvation = -30141.660191 eV Core-core repulsion = 26160.451672 eV Total energy + Delta-G solvation = -3981.208519 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -41.95824 -40.10367 -38.76734 -37.64606 -36.96671 -35.69470 -34.68043 -32.46158 -31.75676 -31.35072 -29.18770 -28.46113 -27.06645 -26.59110 -25.58522 -23.54519 -22.91757 -22.16969 -20.71152 -19.38528 -19.07159 -18.87655 -17.84140 -17.62218 -17.33882 -17.12718 -16.74161 -16.32134 -15.78506 -15.64956 -15.31968 -15.18158 -15.02592 -14.82823 -14.49085 -14.15035 -14.01192 -13.89290 -13.84539 -13.53672 -13.22868 -13.07789 -12.97934 -12.84078 -12.80391 -12.60447 -12.42830 -12.35434 -12.26504 -11.81386 -11.74492 -11.59313 -11.29399 -11.20833 -11.12835 -11.06515 -10.72621 -10.55414 -9.78450 -9.56496 -9.39478 -8.80531 -6.48288 0.44366 1.11639 1.38197 1.42216 1.55290 2.02040 2.08308 2.17365 2.71516 3.09391 3.17381 3.35611 3.64559 3.68575 3.93411 4.04681 4.07297 4.14198 4.21029 4.31074 4.37631 4.39381 4.42221 4.56107 4.56962 4.63272 4.68470 4.76669 4.81090 4.87596 4.89611 4.98753 4.99541 5.02268 5.11798 5.24363 5.27059 5.28078 5.29294 5.35227 5.57980 5.62148 5.80215 5.94056 5.99048 6.20366 6.52546 6.59899 6.76213 6.85113 6.87386 6.92282 7.30674 8.16509 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.017007 B = 0.003358 C = 0.003069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1646.023796 B = 8336.553485 C = 9121.607483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.059 4.059 3 C 0.087 3.913 4 O -0.582 6.582 5 C 0.102 3.898 6 N -0.624 5.624 7 C 0.589 3.411 8 O -0.607 6.607 9 C -0.289 4.289 10 C -0.059 4.059 11 C -0.194 4.194 12 C 0.105 3.895 13 C -0.476 4.476 14 H 0.087 0.913 15 C 0.040 3.960 16 N -0.800 5.800 17 Si 0.987 3.013 18 H -0.262 1.262 19 H -0.262 1.262 20 H -0.255 1.255 21 C -0.250 4.250 22 C -0.035 4.035 23 C 0.112 3.888 24 C -0.056 4.056 25 C -0.127 4.127 26 C 0.088 3.912 27 O -0.583 6.583 28 H 0.081 0.919 29 H 0.058 0.942 30 H 0.069 0.931 31 H 0.076 0.924 32 H 0.028 0.972 33 H 0.395 0.605 34 H 0.078 0.922 35 H 0.084 0.916 36 H 0.123 0.877 37 H 0.108 0.892 38 H 0.297 0.703 39 H 0.106 0.894 40 H 0.100 0.900 41 H 0.064 0.936 42 H 0.076 0.924 43 H 0.068 0.932 44 H 0.059 0.941 45 H 0.081 0.919 46 H 0.027 0.973 47 H 0.077 0.923 48 H 0.395 0.605 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.268 7.423 14.279 19.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.061 4.061 3 C 0.010 3.990 4 O -0.390 6.390 5 C -0.020 4.020 6 N -0.356 5.356 7 C 0.385 3.615 8 O -0.492 6.492 9 C -0.294 4.294 10 C -0.077 4.077 11 C -0.213 4.213 12 C 0.102 3.898 13 C -0.504 4.504 14 H 0.105 0.895 15 C -0.180 4.180 16 N -0.423 5.423 17 Si 0.806 3.194 18 H -0.186 1.186 19 H -0.186 1.186 20 H -0.179 1.179 21 C -0.269 4.269 22 C -0.054 4.054 23 C -0.010 4.010 24 C -0.057 4.057 25 C -0.184 4.184 26 C 0.010 3.990 27 O -0.391 6.391 28 H 0.100 0.900 29 H 0.077 0.923 30 H 0.088 0.912 31 H 0.094 0.906 32 H 0.046 0.954 33 H 0.244 0.756 34 H 0.096 0.904 35 H 0.102 0.898 36 H 0.141 0.859 37 H 0.126 0.874 38 H 0.108 0.892 39 H 0.124 0.876 40 H 0.118 0.882 41 H 0.082 0.918 42 H 0.094 0.906 43 H 0.087 0.913 44 H 0.078 0.922 45 H 0.100 0.900 46 H 0.045 0.955 47 H 0.095 0.905 48 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges -10.524 5.934 14.067 18.543 hybrid contribution 1.173 0.873 -0.572 1.570 sum -9.351 6.807 13.495 17.773 Atomic orbital electron populations 1.21832 0.90700 1.02829 1.03187 1.21557 0.98148 0.93456 0.92892 1.22269 0.96010 0.91734 0.89005 1.86436 1.74972 1.30347 1.47222 1.22912 0.85924 0.95536 0.97652 1.48759 1.12939 1.56184 1.17669 1.18178 0.80244 0.76769 0.86290 1.90613 1.40738 1.48481 1.69335 1.19062 0.94839 1.22297 0.93167 1.21025 0.96834 0.96144 0.93713 1.20901 0.97247 1.08652 0.94551 1.18098 0.91656 0.86589 0.93450 1.20089 1.07752 1.29414 0.93099 0.89527 1.26940 0.92775 0.93841 1.04408 1.69784 1.14734 1.20446 1.37372 0.85118 0.79145 0.79436 0.75669 1.18627 1.18564 1.17877 1.20841 0.97816 1.13329 0.94928 1.20456 0.95254 0.94921 0.94750 1.22465 0.98867 0.97243 0.82474 1.21492 0.96031 0.94298 0.93923 1.21822 0.95657 1.01931 0.98992 1.22266 0.95953 0.93675 0.87063 1.86413 1.69835 1.43923 1.38920 0.89976 0.92276 0.91246 0.90558 0.95375 0.75574 0.90439 0.89787 0.85931 0.87364 0.89196 0.87604 0.88202 0.91754 0.90579 0.91289 0.92183 0.90023 0.95451 0.90497 0.75497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.19 7.14 71.98 0.51 -1.68 16 2 C -0.06 -1.31 0.84 -51.27 -0.04 -1.36 16 3 C 0.09 1.82 4.73 71.98 0.34 2.16 16 4 O -0.58 -12.99 12.34 -148.98 -1.84 -14.83 16 5 C 0.10 3.10 4.07 86.54 0.35 3.46 16 6 N -0.62 -22.73 3.31 -811.57 -2.69 -25.42 16 7 C 0.59 27.27 7.71 86.73 0.67 27.94 16 8 O -0.61 -31.60 16.79 -3.98 -0.07 -31.66 16 9 C -0.29 -14.13 5.76 -19.93 -0.11 -14.24 16 10 C -0.06 -2.76 7.89 22.25 0.18 -2.58 16 11 C -0.19 -9.98 8.63 22.47 0.19 -9.78 16 12 C 0.11 5.60 5.55 -21.28 -0.12 5.48 16 13 C -0.48 -24.46 9.03 23.46 0.21 -24.24 16 14 H 0.09 4.24 7.92 -2.91 -0.02 4.22 16 15 C 0.04 1.87 5.09 85.35 0.43 2.30 16 16 N -0.80 -39.29 11.14 21.87 0.24 -39.04 16 17 Si 0.99 35.18 29.60 68.60 2.03 37.21 16 18 H -0.26 -9.03 7.11 99.48 0.71 -8.33 16 19 H -0.26 -8.79 7.11 99.48 0.71 -8.09 16 20 H -0.26 -8.94 7.11 99.48 0.71 -8.23 16 21 C -0.25 -12.75 9.73 22.47 0.22 -12.53 16 22 C -0.03 -1.74 9.52 22.25 0.21 -1.52 16 23 C 0.11 3.37 6.09 86.53 0.53 3.90 16 24 C -0.06 -1.22 0.83 -51.28 -0.04 -1.26 16 25 C -0.13 -2.04 7.13 71.98 0.51 -1.53 16 26 C 0.09 1.75 4.73 71.98 0.34 2.09 16 27 O -0.58 -11.65 12.34 -148.98 -1.84 -13.49 16 28 H 0.08 1.04 6.80 -2.38 -0.02 1.02 16 29 H 0.06 1.15 7.62 -2.39 -0.02 1.13 16 30 H 0.07 1.08 6.75 -2.39 -0.02 1.07 16 31 H 0.08 1.12 6.80 -2.39 -0.02 1.10 16 32 H 0.03 0.71 6.80 -2.39 -0.02 0.69 16 33 H 0.39 5.64 9.12 -74.06 -0.68 4.97 16 34 H 0.08 2.20 7.52 -2.39 -0.02 2.18 16 35 H 0.08 2.97 5.03 -2.39 -0.01 2.96 16 36 H 0.12 5.11 4.88 -2.91 -0.01 5.09 16 37 H 0.11 5.64 6.32 -2.91 -0.02 5.62 16 38 H 0.30 12.94 8.29 -92.71 -0.77 12.17 16 39 H 0.11 5.04 8.06 -2.91 -0.02 5.02 16 40 H 0.10 4.85 7.80 -2.91 -0.02 4.82 16 41 H 0.06 2.25 7.14 -2.39 -0.02 2.24 16 42 H 0.08 2.11 7.83 -2.39 -0.02 2.09 16 43 H 0.07 1.03 6.75 -2.39 -0.02 1.01 16 44 H 0.06 1.06 7.62 -2.39 -0.02 1.05 16 45 H 0.08 0.99 6.80 -2.38 -0.02 0.97 16 46 H 0.03 0.67 6.80 -2.39 -0.02 0.66 16 47 H 0.08 1.07 6.80 -2.39 -0.02 1.06 16 48 H 0.40 4.48 9.12 -74.06 -0.68 3.81 16 Total: -1.00 -70.22 369.88 -0.11 -70.33 By element: Atomic # 1 Polarization: 40.64 SS G_CDS: -0.33 Total: 40.30 kcal Atomic # 6 Polarization: -27.78 SS G_CDS: 4.38 Total: -23.40 kcal Atomic # 7 Polarization: -62.02 SS G_CDS: -2.44 Total: -64.46 kcal Atomic # 8 Polarization: -56.24 SS G_CDS: -3.74 Total: -59.98 kcal Atomic # 14 Polarization: 35.18 SS G_CDS: 2.03 Total: 37.21 kcal Total: -70.22 -0.11 -70.33 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000529962943.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.965 kcal (2) G-P(sol) polarization free energy of solvation -70.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.329 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds