Wall clock time and date at job start Tue Mar 31 2020 18:04:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42899 * 114.00155 * 2 1 4 4 C 1.53001 * 109.47046 * 180.02562 * 3 2 1 5 5 N 1.46495 * 109.47031 * 65.00127 * 4 3 2 6 6 C 1.46503 * 119.99885 * 278.61120 * 5 4 3 7 7 C 1.50709 * 109.46909 * 264.62970 * 6 5 4 8 8 H 1.08001 * 120.00094 * 359.97438 * 7 6 5 9 9 C 1.37877 * 119.99956 * 180.02562 * 7 6 5 10 10 N 1.31513 * 119.99985 * 180.02562 * 9 7 6 11 11 Si 1.86801 * 120.00099 * 359.97438 * 9 7 6 12 12 H 1.48498 * 109.46898 * 89.99981 * 11 9 7 13 13 H 1.48500 * 109.47110 * 210.00585 * 11 9 7 14 14 H 1.48505 * 109.46834 * 330.00231 * 11 9 7 15 15 C 1.34780 * 119.99900 * 98.61104 * 5 4 3 16 16 O 1.21592 * 119.99618 * 186.36481 * 15 5 4 17 17 C 1.47597 * 119.99815 * 6.36466 * 15 5 4 18 18 C 1.39748 * 120.26952 * 330.17503 * 17 15 5 19 19 C 1.37467 * 120.20475 * 179.79140 * 18 17 15 20 20 C 1.39594 * 120.42840 * 0.03928 * 19 18 17 21 21 C 1.39185 * 119.10303 * 0.29866 * 20 19 18 22 22 C 1.37303 * 120.93416 * 359.50724 * 21 20 19 23 23 C 1.51674 * 106.99684 * 179.50884 * 21 20 19 24 24 C 1.53002 * 110.94331 * 102.74654 * 23 21 20 25 25 C 1.53005 * 110.94146 * 226.40121 * 23 21 20 26 26 C 1.54700 * 101.93724 * 344.57219 * 23 21 20 27 27 O 1.35999 * 129.72260 * 181.01849 * 20 19 18 28 28 H 1.09000 * 109.47024 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.46564 * 299.99901 * 1 2 3 30 30 H 1.08994 * 109.46859 * 59.99833 * 1 2 3 31 31 H 1.09000 * 109.46749 * 59.99879 * 3 2 1 32 32 H 1.09001 * 109.47282 * 300.00442 * 3 2 1 33 33 H 1.09001 * 109.47319 * 304.99870 * 4 3 2 34 34 H 1.09005 * 109.46954 * 185.00583 * 4 3 2 35 35 H 1.09000 * 109.47333 * 24.62951 * 6 5 4 36 36 H 1.08997 * 109.47252 * 144.63541 * 6 5 4 37 37 H 0.96995 * 120.00101 * 180.02562 * 10 9 7 38 38 H 1.08007 * 119.89808 * 359.81743 * 18 17 15 39 39 H 1.07998 * 119.78691 * 180.02562 * 19 18 17 40 40 H 1.08003 * 120.06915 * 180.31615 * 22 21 20 41 41 H 1.09001 * 109.47006 * 183.02367 * 24 23 21 42 42 H 1.09003 * 109.46939 * 303.01815 * 24 23 21 43 43 H 1.08996 * 109.47279 * 63.01748 * 24 23 21 44 44 H 1.08997 * 109.47199 * 296.97909 * 25 23 21 45 45 H 1.09002 * 109.46789 * 56.98354 * 25 23 21 46 46 H 1.09000 * 109.46588 * 176.98090 * 25 23 21 47 47 H 1.09004 * 110.74042 * 143.69678 * 26 23 21 48 48 H 1.08998 * 110.74540 * 267.03966 * 26 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5356 1.1846 -0.0006 5 7 3.9757 0.5644 -1.2527 6 6 3.9255 -0.8918 -1.4061 7 6 5.2723 -1.4789 -1.0704 8 1 6.0844 -0.8321 -0.7730 9 6 5.4679 -2.8418 -1.1440 10 7 6.6429 -3.3542 -0.8506 11 14 4.0633 -3.9605 -1.6591 12 1 4.0802 -4.1288 -3.1344 13 1 4.2216 -5.2856 -1.0078 14 1 2.7717 -3.3562 -1.2445 15 6 4.4268 1.3334 -2.2635 16 8 4.6826 0.8320 -3.3413 17 6 4.6103 2.7840 -2.0620 18 6 3.8035 3.4768 -1.1554 19 6 3.9784 4.8270 -0.9656 20 6 4.9611 5.5193 -1.6754 21 6 5.7568 4.8252 -2.5821 22 6 5.5930 3.4758 -2.7763 23 6 6.7090 5.8323 -3.1981 24 6 8.1060 5.7094 -2.5862 25 6 6.7651 5.6729 -4.7188 26 6 6.0503 7.1763 -2.8069 27 8 5.3070 6.8336 -1.6240 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3632 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 1.6887 1.8463 0.8900 32 1 1.6887 1.8464 -0.8899 33 1 3.8516 0.5681 0.8409 34 1 3.9787 2.1764 0.0890 35 1 3.1723 -1.3022 -0.7336 36 1 3.6674 -1.1400 -2.4356 37 1 6.7807 -4.3130 -0.9027 38 1 3.0404 2.9497 -0.6018 39 1 3.3514 5.3557 -0.2630 40 1 6.2217 2.9501 -3.4798 41 1 8.7554 6.4775 -3.0061 42 1 8.0420 5.8385 -1.5057 43 1 8.5156 4.7246 -2.8108 44 1 7.1602 4.6877 -4.9665 45 1 5.7618 5.7766 -5.1321 46 1 7.4132 6.4409 -5.1409 47 1 6.8082 7.9271 -2.5833 48 1 5.3826 7.5230 -3.5956 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000589431622.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:04:47 Heat of formation + Delta-G solvation = -51.149786 kcal Electronic energy + Delta-G solvation = -29665.415768 eV Core-core repulsion = 25687.595834 eV Total energy + Delta-G solvation = -3977.819933 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.57427 -39.72720 -37.67560 -36.88747 -35.42110 -34.99768 -32.63613 -30.72399 -30.47541 -29.46245 -27.63672 -27.54932 -26.73939 -26.14738 -23.93227 -22.99831 -22.56440 -21.73357 -20.01233 -18.76141 -17.84949 -16.97082 -16.81301 -16.45157 -16.32609 -15.97615 -15.48767 -15.20377 -14.92351 -14.48526 -14.35119 -14.12299 -13.94200 -13.74355 -13.65733 -13.23792 -13.16631 -12.98675 -12.79763 -12.36644 -12.14579 -12.14304 -11.86482 -11.77394 -11.65269 -11.53115 -11.37385 -11.17770 -11.04151 -10.90776 -10.64701 -10.52117 -10.35113 -10.02228 -9.54618 -9.46374 -9.08962 -8.93632 -8.48572 -8.17735 -7.65780 -5.99424 -3.96832 1.00397 1.28123 3.01382 3.26585 3.37618 3.43192 3.47972 3.68750 3.88775 4.00465 4.06970 4.33656 4.49813 4.62018 4.69881 4.81029 4.93148 5.09340 5.12693 5.16756 5.19070 5.28131 5.31693 5.35695 5.36053 5.39344 5.44776 5.48074 5.50281 5.55819 5.58516 5.61637 5.65270 5.75487 5.92536 5.98848 6.02415 6.10692 6.18882 6.30769 6.38191 6.43988 6.96930 7.05732 7.10641 7.29391 7.40477 7.72585 8.29016 8.55787 8.95390 9.04728 9.61650 11.14104 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.013272 B = 0.003671 C = 0.003083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2109.148251 B = 7624.944978 C = 9079.713787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.371 6.371 3 C 0.037 3.963 4 C 0.078 3.922 5 N -0.576 5.576 6 C 0.219 3.781 7 C -0.526 4.526 8 H 0.073 0.927 9 C 0.072 3.928 10 N -0.901 5.901 11 Si 0.873 3.127 12 H -0.275 1.275 13 H -0.286 1.286 14 H -0.261 1.261 15 C 0.552 3.448 16 O -0.534 6.534 17 C -0.144 4.144 18 C -0.087 4.087 19 C -0.146 4.146 20 C 0.119 3.881 21 C -0.171 4.171 22 C -0.010 4.010 23 C -0.051 4.051 24 C -0.136 4.136 25 C -0.137 4.137 26 C 0.058 3.942 27 O -0.303 6.303 28 H 0.084 0.916 29 H 0.037 0.963 30 H 0.037 0.963 31 H 0.058 0.942 32 H 0.051 0.949 33 H 0.092 0.908 34 H 0.113 0.887 35 H 0.051 0.949 36 H 0.031 0.969 37 H 0.263 0.737 38 H 0.159 0.841 39 H 0.132 0.868 40 H 0.135 0.865 41 H 0.062 0.938 42 H 0.060 0.940 43 H 0.066 0.934 44 H 0.067 0.933 45 H 0.060 0.940 46 H 0.062 0.938 47 H 0.106 0.894 48 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.677 21.723 -0.270 22.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.289 6.289 3 C -0.041 4.041 4 C -0.046 4.046 5 N -0.306 5.306 6 C 0.099 3.901 7 C -0.565 4.565 8 H 0.091 0.909 9 C -0.129 4.129 10 N -0.540 5.540 11 Si 0.700 3.300 12 H -0.201 1.201 13 H -0.212 1.212 14 H -0.185 1.185 15 C 0.340 3.660 16 O -0.412 6.412 17 C -0.147 4.147 18 C -0.105 4.105 19 C -0.165 4.165 20 C 0.073 3.927 21 C -0.172 4.172 22 C -0.029 4.029 23 C -0.052 4.052 24 C -0.193 4.193 25 C -0.195 4.195 26 C -0.017 4.017 27 O -0.216 6.216 28 H 0.102 0.898 29 H 0.056 0.944 30 H 0.056 0.944 31 H 0.076 0.924 32 H 0.069 0.931 33 H 0.110 0.890 34 H 0.130 0.870 35 H 0.068 0.932 36 H 0.049 0.951 37 H 0.073 0.927 38 H 0.176 0.824 39 H 0.150 0.850 40 H 0.153 0.847 41 H 0.081 0.919 42 H 0.079 0.921 43 H 0.086 0.914 44 H 0.086 0.914 45 H 0.079 0.921 46 H 0.081 0.919 47 H 0.124 0.876 48 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -6.376 21.241 -0.658 22.187 hybrid contribution -0.700 -0.496 -0.266 0.898 sum -7.077 20.745 -0.924 21.939 Atomic orbital electron populations 1.22737 0.81867 1.02688 0.99397 1.88096 1.18916 1.26699 1.95185 1.23176 0.95130 0.85825 0.99963 1.22371 0.91456 1.01162 0.89562 1.47712 1.61548 1.08829 1.12545 1.19752 0.98161 0.74371 0.97826 1.21374 0.96264 0.92762 1.46050 0.90914 1.24812 0.95554 0.97863 0.94705 1.69901 1.22367 1.12366 1.49340 0.86879 0.83568 0.80266 0.79293 1.20098 1.21244 1.18515 1.17994 0.78233 0.85216 0.84582 1.90754 1.50981 1.74456 1.25051 1.20050 0.99841 0.94746 1.00074 1.21993 0.99526 0.93126 0.95880 1.20161 0.98760 0.93716 1.03868 1.19783 0.93692 0.83665 0.95548 1.20554 0.99437 0.94652 1.02591 1.20299 0.95286 0.91343 0.95965 1.20791 0.95289 0.92127 0.96949 1.21804 0.93662 1.02856 1.01001 1.21785 1.02402 1.02930 0.92347 1.24019 0.94632 0.96872 0.86158 1.86785 1.70442 1.23236 1.41186 0.89762 0.94397 0.94392 0.92388 0.93071 0.88982 0.86964 0.93162 0.95111 0.92717 0.82394 0.85044 0.84745 0.91859 0.92053 0.91448 0.91357 0.92059 0.91919 0.87601 0.90375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 11.01 101.05 1.11 1.47 16 2 O -0.37 -6.01 8.85 -35.23 -0.31 -6.32 16 3 C 0.04 0.50 5.06 37.16 0.19 0.68 16 4 C 0.08 1.26 5.32 -4.04 -0.02 1.24 16 5 N -0.58 -12.32 2.48 -176.26 -0.44 -12.75 16 6 C 0.22 5.58 4.00 -5.19 -0.02 5.56 16 7 C -0.53 -15.57 9.90 -34.44 -0.34 -15.91 16 8 H 0.07 2.35 8.06 -52.49 -0.42 1.93 16 9 C 0.07 2.17 5.47 -17.82 -0.10 2.07 16 10 N -0.90 -28.42 13.96 55.43 0.77 -27.64 16 11 Si 0.87 22.28 27.47 -169.99 -4.67 17.61 16 12 H -0.28 -7.05 7.11 56.52 0.40 -6.64 16 13 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 14 H -0.26 -6.34 6.54 56.52 0.37 -5.97 16 15 C 0.55 11.93 7.41 -12.44 -0.09 11.84 16 16 O -0.53 -13.70 16.36 5.29 0.09 -13.61 16 17 C -0.14 -2.43 5.59 -104.93 -0.59 -3.02 16 18 C -0.09 -1.17 7.46 -39.30 -0.29 -1.46 16 19 C -0.15 -1.76 10.05 -39.36 -0.40 -2.15 16 20 C 0.12 1.53 7.04 -38.72 -0.27 1.25 16 21 C -0.17 -2.26 5.03 -104.13 -0.52 -2.78 16 22 C -0.01 -0.16 9.47 -39.33 -0.37 -0.53 16 23 C -0.05 -0.51 1.03 -154.28 -0.16 -0.67 16 24 C -0.14 -1.27 8.61 37.16 0.32 -0.95 16 25 C -0.14 -1.21 8.53 37.16 0.32 -0.89 16 26 C 0.06 0.51 7.10 38.05 0.27 0.78 16 27 O -0.30 -3.58 11.10 -19.74 -0.22 -3.79 16 28 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 29 H 0.04 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 32 H 0.05 0.65 7.26 -51.93 -0.38 0.28 16 33 H 0.09 1.57 8.13 -51.93 -0.42 1.15 16 34 H 0.11 1.53 4.02 -52.05 -0.21 1.32 16 35 H 0.05 1.26 5.53 -51.93 -0.29 0.97 16 36 H 0.03 0.84 6.93 -51.93 -0.36 0.48 16 37 H 0.26 7.76 8.31 -40.82 -0.34 7.42 16 38 H 0.16 1.85 2.67 -52.48 -0.14 1.71 16 39 H 0.13 1.23 8.06 -52.49 -0.42 0.81 16 40 H 0.13 2.20 7.93 -52.48 -0.42 1.78 16 41 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 43 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 44 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 45 H 0.06 0.54 8.13 -51.93 -0.42 0.12 16 46 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 47 H 0.11 0.68 7.92 -51.93 -0.41 0.27 16 48 H 0.08 0.59 7.91 -51.93 -0.41 0.18 16 LS Contribution 383.17 15.07 5.77 5.77 Total: -1.00 -36.59 383.17 -7.24 -43.83 By element: Atomic # 1 Polarization: 7.66 SS G_CDS: -7.27 Total: 0.38 kcal Atomic # 6 Polarization: -2.51 SS G_CDS: -0.97 Total: -3.48 kcal Atomic # 7 Polarization: -40.73 SS G_CDS: 0.34 Total: -40.40 kcal Atomic # 8 Polarization: -23.28 SS G_CDS: -0.44 Total: -23.73 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -4.67 Total: 17.61 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -36.59 -7.24 -43.83 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589431622.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.318 kcal (2) G-P(sol) polarization free energy of solvation -36.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.831 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds