Wall clock time and date at job start Tue Mar 31 2020 18:04:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42899 * 114.00155 * 2 1 4 4 C 1.53001 * 109.47046 * 180.02562 * 3 2 1 5 5 N 1.46495 * 109.47031 * 65.00127 * 4 3 2 6 6 C 1.46503 * 119.99885 * 278.61120 * 5 4 3 7 7 C 1.50709 * 109.46909 * 264.62970 * 6 5 4 8 8 H 1.08001 * 120.00094 * 359.97438 * 7 6 5 9 9 C 1.37877 * 119.99956 * 180.02562 * 7 6 5 10 10 N 1.31513 * 119.99985 * 180.02562 * 9 7 6 11 11 Si 1.86801 * 120.00099 * 359.97438 * 9 7 6 12 12 H 1.48498 * 109.46898 * 89.99981 * 11 9 7 13 13 H 1.48500 * 109.47110 * 210.00585 * 11 9 7 14 14 H 1.48505 * 109.46834 * 330.00231 * 11 9 7 15 15 C 1.34780 * 119.99900 * 98.61104 * 5 4 3 16 16 O 1.21592 * 119.99618 * 186.36481 * 15 5 4 17 17 C 1.47597 * 119.99815 * 6.36466 * 15 5 4 18 18 C 1.39748 * 120.26952 * 330.17503 * 17 15 5 19 19 C 1.37467 * 120.20475 * 179.79140 * 18 17 15 20 20 C 1.39594 * 120.42840 * 0.03928 * 19 18 17 21 21 C 1.39185 * 119.10303 * 0.29866 * 20 19 18 22 22 C 1.37303 * 120.93416 * 359.50724 * 21 20 19 23 23 C 1.51674 * 106.99684 * 179.50884 * 21 20 19 24 24 C 1.53002 * 110.94331 * 102.74654 * 23 21 20 25 25 C 1.53005 * 110.94146 * 226.40121 * 23 21 20 26 26 C 1.54700 * 101.93724 * 344.57219 * 23 21 20 27 27 O 1.35999 * 129.72260 * 181.01849 * 20 19 18 28 28 H 1.09000 * 109.47024 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.46564 * 299.99901 * 1 2 3 30 30 H 1.08994 * 109.46859 * 59.99833 * 1 2 3 31 31 H 1.09000 * 109.46749 * 59.99879 * 3 2 1 32 32 H 1.09001 * 109.47282 * 300.00442 * 3 2 1 33 33 H 1.09001 * 109.47319 * 304.99870 * 4 3 2 34 34 H 1.09005 * 109.46954 * 185.00583 * 4 3 2 35 35 H 1.09000 * 109.47333 * 24.62951 * 6 5 4 36 36 H 1.08997 * 109.47252 * 144.63541 * 6 5 4 37 37 H 0.96995 * 120.00101 * 180.02562 * 10 9 7 38 38 H 1.08007 * 119.89808 * 359.81743 * 18 17 15 39 39 H 1.07998 * 119.78691 * 180.02562 * 19 18 17 40 40 H 1.08003 * 120.06915 * 180.31615 * 22 21 20 41 41 H 1.09001 * 109.47006 * 183.02367 * 24 23 21 42 42 H 1.09003 * 109.46939 * 303.01815 * 24 23 21 43 43 H 1.08996 * 109.47279 * 63.01748 * 24 23 21 44 44 H 1.08997 * 109.47199 * 296.97909 * 25 23 21 45 45 H 1.09002 * 109.46789 * 56.98354 * 25 23 21 46 46 H 1.09000 * 109.46588 * 176.98090 * 25 23 21 47 47 H 1.09004 * 110.74042 * 143.69678 * 26 23 21 48 48 H 1.08998 * 110.74540 * 267.03966 * 26 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5356 1.1846 -0.0006 5 7 3.9757 0.5644 -1.2527 6 6 3.9255 -0.8918 -1.4061 7 6 5.2723 -1.4789 -1.0704 8 1 6.0844 -0.8321 -0.7730 9 6 5.4679 -2.8418 -1.1440 10 7 6.6429 -3.3542 -0.8506 11 14 4.0633 -3.9605 -1.6591 12 1 4.0802 -4.1288 -3.1344 13 1 4.2216 -5.2856 -1.0078 14 1 2.7717 -3.3562 -1.2445 15 6 4.4268 1.3334 -2.2635 16 8 4.6826 0.8320 -3.3413 17 6 4.6103 2.7840 -2.0620 18 6 3.8035 3.4768 -1.1554 19 6 3.9784 4.8270 -0.9656 20 6 4.9611 5.5193 -1.6754 21 6 5.7568 4.8252 -2.5821 22 6 5.5930 3.4758 -2.7763 23 6 6.7090 5.8323 -3.1981 24 6 8.1060 5.7094 -2.5862 25 6 6.7651 5.6729 -4.7188 26 6 6.0503 7.1763 -2.8069 27 8 5.3070 6.8336 -1.6240 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3632 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 1.6887 1.8463 0.8900 32 1 1.6887 1.8464 -0.8899 33 1 3.8516 0.5681 0.8409 34 1 3.9787 2.1764 0.0890 35 1 3.1723 -1.3022 -0.7336 36 1 3.6674 -1.1400 -2.4356 37 1 6.7807 -4.3130 -0.9027 38 1 3.0404 2.9497 -0.6018 39 1 3.3514 5.3557 -0.2630 40 1 6.2217 2.9501 -3.4798 41 1 8.7554 6.4775 -3.0061 42 1 8.0420 5.8385 -1.5057 43 1 8.5156 4.7246 -2.8108 44 1 7.1602 4.6877 -4.9665 45 1 5.7618 5.7766 -5.1321 46 1 7.4132 6.4409 -5.1409 47 1 6.8082 7.9271 -2.5833 48 1 5.3826 7.5230 -3.5956 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000589431622.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:04:46 Heat of formation + Delta-G solvation = -76.332500 kcal Electronic energy + Delta-G solvation = -29666.507772 eV Core-core repulsion = 25687.595834 eV Total energy + Delta-G solvation = -3978.911938 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -42.54705 -41.16351 -38.84831 -38.14188 -36.73616 -36.14699 -34.81067 -32.22353 -31.66247 -30.61747 -29.40306 -28.32057 -27.51158 -27.15701 -25.47425 -24.13110 -23.88809 -23.27471 -21.04026 -20.16075 -19.14187 -18.91315 -18.05350 -17.72238 -17.26728 -16.96389 -16.93484 -16.49897 -16.32304 -15.96156 -15.55188 -15.34391 -15.25367 -14.91278 -14.62860 -14.51994 -14.38707 -14.30444 -13.91342 -13.71145 -13.64760 -13.26396 -13.13731 -13.04076 -12.88073 -12.69487 -12.50859 -12.42158 -12.31797 -12.04624 -12.01265 -11.92210 -11.75132 -11.62006 -11.50920 -10.83569 -10.80762 -10.54873 -10.00870 -9.50821 -9.18862 -8.34057 -6.38059 -0.16281 0.21154 1.31618 1.34989 1.46328 1.74878 2.18587 2.23546 2.31737 2.68471 2.86771 3.01560 3.22779 3.43713 3.58185 3.74373 3.91116 3.97707 4.04072 4.12745 4.19965 4.28553 4.33360 4.40651 4.46482 4.54454 4.55300 4.59111 4.62450 4.69712 4.75371 4.84630 4.88109 4.89648 4.90302 4.94525 4.99961 5.04138 5.10105 5.17388 5.25212 5.28163 5.32135 5.37033 5.46666 5.59318 6.07159 6.24006 6.30621 6.61555 6.64876 7.18947 7.33450 8.83127 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.013272 B = 0.003671 C = 0.003083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2109.148251 B = 7624.944978 C = 9079.713787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.413 6.413 3 C 0.040 3.960 4 C 0.070 3.930 5 N -0.584 5.584 6 C 0.235 3.765 7 C -0.536 4.536 8 H 0.026 0.974 9 C 0.013 3.987 10 N -0.945 5.945 11 Si 0.945 3.055 12 H -0.276 1.276 13 H -0.272 1.272 14 H -0.239 1.239 15 C 0.544 3.456 16 O -0.594 6.594 17 C -0.171 4.171 18 C -0.076 4.076 19 C -0.136 4.136 20 C 0.123 3.877 21 C -0.176 4.176 22 C -0.027 4.027 23 C -0.054 4.054 24 C -0.135 4.135 25 C -0.136 4.136 26 C 0.058 3.942 27 O -0.305 6.305 28 H 0.083 0.917 29 H 0.065 0.935 30 H 0.045 0.955 31 H 0.106 0.894 32 H 0.060 0.940 33 H 0.078 0.922 34 H 0.139 0.861 35 H 0.062 0.938 36 H 0.008 0.992 37 H 0.268 0.732 38 H 0.179 0.821 39 H 0.171 0.829 40 H 0.110 0.890 41 H 0.092 0.908 42 H 0.054 0.946 43 H 0.048 0.952 44 H 0.048 0.952 45 H 0.059 0.941 46 H 0.090 0.910 47 H 0.136 0.864 48 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.085 24.916 0.808 26.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.333 6.333 3 C -0.037 4.037 4 C -0.052 4.052 5 N -0.312 5.312 6 C 0.113 3.887 7 C -0.575 4.575 8 H 0.044 0.956 9 C -0.185 4.185 10 N -0.586 5.586 11 Si 0.768 3.232 12 H -0.202 1.202 13 H -0.197 1.197 14 H -0.163 1.163 15 C 0.334 3.666 16 O -0.476 6.476 17 C -0.175 4.175 18 C -0.094 4.094 19 C -0.154 4.154 20 C 0.077 3.923 21 C -0.177 4.177 22 C -0.046 4.046 23 C -0.054 4.054 24 C -0.192 4.192 25 C -0.193 4.193 26 C -0.016 4.016 27 O -0.219 6.219 28 H 0.102 0.898 29 H 0.083 0.917 30 H 0.064 0.936 31 H 0.124 0.876 32 H 0.078 0.922 33 H 0.096 0.904 34 H 0.156 0.844 35 H 0.080 0.920 36 H 0.026 0.974 37 H 0.077 0.923 38 H 0.195 0.805 39 H 0.188 0.812 40 H 0.128 0.872 41 H 0.111 0.889 42 H 0.073 0.927 43 H 0.067 0.933 44 H 0.068 0.932 45 H 0.078 0.922 46 H 0.109 0.891 47 H 0.154 0.846 48 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -8.804 24.483 0.466 26.022 hybrid contribution 0.173 -1.332 -0.588 1.466 sum -8.631 23.151 -0.122 24.708 Atomic orbital electron populations 1.22912 0.79725 1.03342 1.01103 1.88011 1.21381 1.28329 1.95583 1.23214 0.92369 0.85555 1.02595 1.22771 0.94238 1.01709 0.86473 1.47756 1.61629 1.07373 1.14474 1.19300 0.95711 0.77263 0.96387 1.21596 0.97059 0.92781 1.46033 0.95590 1.25795 0.98604 0.99608 0.94464 1.70047 1.24819 1.13127 1.50571 0.85747 0.80542 0.78268 0.78664 1.20175 1.19658 1.16260 1.18775 0.76801 0.87293 0.83707 1.90693 1.53472 1.76094 1.27356 1.19732 1.02509 0.92020 1.03193 1.22074 0.98883 0.93764 0.94659 1.20521 0.98416 0.92911 1.03545 1.20042 0.93231 0.84323 0.94725 1.20813 1.00277 0.93812 1.02815 1.20174 0.95541 0.92683 0.96230 1.20942 0.94996 0.92030 0.97441 1.21809 0.93834 1.02857 1.00691 1.21778 1.02864 1.02863 0.91764 1.24318 0.95331 0.96316 0.85666 1.86789 1.70497 1.22113 1.42474 0.89813 0.91662 0.93603 0.87635 0.92188 0.90383 0.84371 0.92009 0.97353 0.92273 0.80471 0.81156 0.87222 0.88949 0.92735 0.93329 0.93249 0.92202 0.89129 0.84580 0.88623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.53 11.01 113.37 1.25 1.78 16 2 O -0.41 -12.65 8.85 -148.98 -1.32 -13.96 16 3 C 0.04 0.96 5.06 71.98 0.36 1.32 16 4 C 0.07 2.22 5.32 86.38 0.46 2.68 16 5 N -0.58 -25.93 2.48 -829.82 -2.05 -27.98 16 6 C 0.24 12.47 4.00 85.64 0.34 12.81 16 7 C -0.54 -33.58 9.90 25.60 0.25 -33.32 16 8 H 0.03 1.81 8.06 -2.91 -0.02 1.78 16 9 C 0.01 0.81 5.47 84.65 0.46 1.27 16 10 N -0.95 -62.06 13.96 21.45 0.30 -61.77 16 11 Si 0.95 47.08 27.47 68.60 1.88 48.97 16 12 H -0.28 -13.74 7.11 99.48 0.71 -13.03 16 13 H -0.27 -12.79 7.11 99.48 0.71 -12.08 16 14 H -0.24 -11.01 6.54 99.48 0.65 -10.36 16 15 C 0.54 24.96 7.41 86.71 0.64 25.60 16 16 O -0.59 -32.99 16.36 -4.00 -0.07 -33.06 16 17 C -0.17 -5.99 5.59 -20.06 -0.11 -6.10 16 18 C -0.08 -1.90 7.46 22.45 0.17 -1.73 16 19 C -0.14 -2.79 10.05 22.42 0.23 -2.57 16 20 C 0.12 2.84 7.04 22.82 0.16 3.00 16 21 C -0.18 -4.55 5.03 -19.55 -0.10 -4.65 16 22 C -0.03 -0.90 9.47 22.43 0.21 -0.69 16 23 C -0.05 -0.99 1.03 -52.03 -0.05 -1.04 16 24 C -0.13 -2.35 8.61 71.98 0.62 -1.73 16 25 C -0.14 -2.24 8.53 71.98 0.61 -1.62 16 26 C 0.06 0.79 7.10 72.56 0.51 1.31 16 27 O -0.31 -6.07 11.10 -93.54 -1.04 -7.10 16 28 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 29 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 30 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 31 H 0.11 1.59 8.14 -2.39 -0.02 1.57 16 32 H 0.06 1.36 7.26 -2.39 -0.02 1.34 16 33 H 0.08 2.69 8.13 -2.39 -0.02 2.67 16 34 H 0.14 3.60 4.02 -2.50 -0.01 3.59 16 35 H 0.06 3.13 5.53 -2.39 -0.01 3.11 16 36 H 0.01 0.48 6.93 -2.39 -0.02 0.46 16 37 H 0.27 16.31 8.31 -92.71 -0.77 15.54 16 38 H 0.18 3.64 2.67 -2.91 -0.01 3.63 16 39 H 0.17 2.23 8.06 -2.91 -0.02 2.21 16 40 H 0.11 4.07 7.93 -2.91 -0.02 4.04 16 41 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 42 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 43 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 44 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 45 H 0.06 1.00 8.13 -2.39 -0.02 0.98 16 46 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 47 H 0.14 1.10 7.92 -2.39 -0.02 1.08 16 48 H 0.10 1.04 7.91 -2.39 -0.02 1.02 16 Total: -1.00 -87.16 383.17 4.64 -82.52 By element: Atomic # 1 Polarization: 15.15 SS G_CDS: 0.91 Total: 16.06 kcal Atomic # 6 Polarization: -9.70 SS G_CDS: 6.02 Total: -3.68 kcal Atomic # 7 Polarization: -87.99 SS G_CDS: -1.76 Total: -89.75 kcal Atomic # 8 Polarization: -51.71 SS G_CDS: -2.42 Total: -54.13 kcal Atomic # 14 Polarization: 47.08 SS G_CDS: 1.88 Total: 48.97 kcal Total: -87.16 4.64 -82.52 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589431622.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.189 kcal (2) G-P(sol) polarization free energy of solvation -87.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.522 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds