Wall clock time and date at job start Tue Mar 31 2020 18:05:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53007 * 109.61168 * 2 1 4 4 O 1.43268 * 109.61628 * 120.35006 * 2 1 3 5 5 C 1.43081 * 113.02409 * 54.27421 * 4 2 1 6 6 C 1.50786 * 109.30317 * 48.58369 * 5 4 2 7 7 C 1.38258 * 119.65298 * 164.04239 * 6 5 4 8 8 C 1.38212 * 120.10305 * 179.84387 * 7 6 5 9 9 C 1.50703 * 119.95318 * 179.97438 * 8 7 6 10 10 N 1.46897 * 109.46870 * 270.02281 * 9 8 7 11 11 C 1.47844 * 111.00095 * 290.84287 * 10 9 8 12 12 C 1.54904 * 104.79745 * 213.63977 * 11 10 9 13 13 C 1.55134 * 101.65565 * 37.06933 * 12 11 10 14 14 O 1.42902 * 110.70804 * 82.72773 * 13 12 11 15 15 C 1.50703 * 110.85930 * 205.89535 * 13 12 11 16 16 H 1.08004 * 119.99796 * 113.68477 * 15 13 12 17 17 C 1.37875 * 119.99966 * 293.68625 * 15 13 12 18 18 N 1.31514 * 119.99817 * 359.97438 * 17 15 13 19 19 Si 1.86802 * 119.99961 * 179.97438 * 17 15 13 20 20 H 1.48499 * 109.47146 * 90.00075 * 19 17 15 21 21 H 1.48495 * 109.46722 * 209.99992 * 19 17 15 22 22 H 1.48499 * 109.46893 * 329.99758 * 19 17 15 23 23 C 1.47447 * 110.99807 * 169.99991 * 10 9 8 24 24 C 1.38289 * 120.08715 * 359.96060 * 8 7 6 25 25 C 1.38088 * 120.03270 * 0.30684 * 24 8 7 26 26 C 1.38591 * 120.42488 * 343.93428 * 6 5 4 27 27 O 1.35966 * 120.54736 * 0.33994 * 26 6 5 28 28 H 1.09001 * 109.47532 * 299.64777 * 1 2 3 29 29 H 1.09002 * 109.47359 * 59.65083 * 1 2 3 30 30 H 1.09002 * 109.47061 * 179.64607 * 1 2 3 31 31 H 1.09001 * 109.46857 * 180.35126 * 3 2 1 32 32 H 1.08998 * 109.46583 * 300.35288 * 3 2 1 33 33 H 1.08996 * 109.46668 * 60.34885 * 3 2 1 34 34 H 1.08994 * 109.50056 * 288.63215 * 5 4 2 35 35 H 1.08999 * 109.52292 * 168.54597 * 5 4 2 36 36 H 1.07997 * 119.94314 * 359.87551 * 7 6 5 37 37 H 1.09001 * 109.47047 * 30.01995 * 9 8 7 38 38 H 1.09003 * 109.46872 * 150.02215 * 9 8 7 39 39 H 1.09004 * 110.37490 * 332.46965 * 11 10 9 40 40 H 1.09004 * 110.37381 * 94.80915 * 11 10 9 41 41 H 1.09003 * 110.99013 * 278.97608 * 12 11 10 42 42 H 1.08999 * 111.02624 * 155.17797 * 12 11 10 43 43 H 0.96706 * 113.99590 * 66.40511 * 14 13 12 44 44 H 0.97003 * 119.99672 * 179.97438 * 18 17 15 45 45 H 1.08995 * 109.89062 * 242.66088 * 23 10 9 46 46 H 1.08999 * 109.88521 * 3.85794 * 23 10 9 47 47 H 1.08002 * 119.97904 * 180.02562 * 24 8 7 48 48 H 1.08000 * 120.00619 * 179.75292 * 25 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0435 1.4413 0.0000 4 8 2.0109 -0.6819 1.1646 5 6 1.4745 -2.0012 1.3021 6 6 1.6104 -2.7336 -0.0089 7 6 1.4736 -4.1091 -0.0414 8 6 1.5931 -4.7895 -1.2385 9 6 1.4439 -6.2888 -1.2699 10 7 2.7564 -6.9158 -1.0642 11 6 3.6392 -6.6913 -2.2287 12 6 4.5030 -7.9736 -2.3233 13 6 3.4812 -9.0701 -1.9229 14 8 2.6813 -9.4493 -3.0447 15 6 4.1825 -10.2703 -1.3409 16 1 4.0406 -10.5273 -0.3015 17 6 5.0053 -11.0403 -2.1353 18 7 5.1777 -10.7276 -3.4011 19 14 5.8751 -12.5277 -1.4138 20 1 5.0153 -13.7282 -1.5704 21 1 7.1603 -12.7430 -2.1259 22 1 6.1414 -12.2940 0.0283 23 6 2.6204 -8.3684 -0.8512 24 6 1.8490 -4.0963 -2.4074 25 6 1.9920 -2.7231 -2.3794 26 6 1.8687 -2.0368 -1.1787 27 8 2.0102 -0.6846 -1.1607 28 1 -0.3634 0.5083 0.8931 29 1 -0.3634 0.5192 -0.8868 30 1 -0.3633 -1.0277 -0.0063 31 1 3.1335 1.4386 -0.0063 32 1 1.6762 1.9578 -0.8868 33 1 1.6865 1.9541 0.8931 34 1 0.4216 -1.9391 1.5767 35 1 2.0217 -2.5379 2.0771 36 1 1.2725 -4.6525 0.8700 37 1 0.7632 -6.6029 -0.4787 38 1 1.0430 -6.5938 -2.2366 39 1 3.0470 -6.5649 -3.1351 40 1 4.2716 -5.8191 -2.0629 41 1 5.3336 -7.9378 -1.6184 42 1 4.8633 -8.1283 -3.3403 43 1 3.1748 -9.8945 -3.7471 44 1 5.7568 -11.2691 -3.9599 45 1 2.9789 -8.6325 0.1436 46 1 1.5770 -8.6634 -0.9624 47 1 1.9417 -4.6297 -3.3419 48 1 2.1958 -2.1826 -3.2919 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592522239.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:05:48 Heat of formation + Delta-G solvation = -104.506828 kcal Electronic energy + Delta-G solvation = -29210.868243 eV Core-core repulsion = 25230.734575 eV Total energy + Delta-G solvation = -3980.133668 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.32395 -38.98985 -37.82004 -36.56289 -34.79649 -33.06817 -32.07096 -31.61334 -31.15298 -28.87708 -28.15643 -27.84029 -26.18803 -25.32772 -23.93091 -22.93159 -21.98716 -20.11281 -19.47963 -19.42092 -18.90565 -17.13845 -16.91264 -16.30429 -15.84192 -15.44094 -14.91342 -14.86077 -14.80202 -14.56392 -14.27598 -13.96630 -13.87003 -13.60759 -13.22095 -13.11752 -12.88276 -12.74729 -12.58842 -12.37731 -12.27494 -12.05361 -11.87839 -11.81243 -11.43228 -11.30119 -11.20892 -10.95599 -10.82494 -10.76432 -10.52356 -10.44377 -10.29782 -10.23687 -9.88653 -9.26875 -8.81363 -8.61772 -8.17503 -8.05589 -7.62405 -6.21441 -4.28292 1.25699 1.41056 2.92782 3.22055 3.22932 3.30072 3.33648 3.69285 4.26275 4.30704 4.36121 4.48705 4.69942 4.77190 4.98733 5.03228 5.05511 5.11357 5.14145 5.20022 5.24475 5.26012 5.35198 5.46437 5.57168 5.63424 5.68063 5.72230 5.74826 5.92313 6.06291 6.13204 6.16541 6.21481 6.27452 6.31302 6.43940 6.53663 6.57871 6.72541 6.78902 6.94831 7.08483 7.31166 7.42673 7.48698 7.67192 7.76844 7.83455 8.14278 8.73030 9.39508 9.51905 10.85879 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.030102 B = 0.002333 C = 0.002303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 929.942734 B =11998.726757 C =12152.907781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.267 3.733 3 C -0.129 4.129 4 O -0.379 6.379 5 C 0.104 3.896 6 C -0.206 4.206 7 C -0.057 4.057 8 C -0.091 4.091 9 C 0.091 3.909 10 N -0.525 5.525 11 C 0.044 3.956 12 C -0.132 4.132 13 C 0.237 3.763 14 O -0.593 6.593 15 C -0.530 4.530 16 H 0.062 0.938 17 C 0.069 3.931 18 N -0.900 5.900 19 Si 0.901 3.099 20 H -0.279 1.279 21 H -0.285 1.285 22 H -0.273 1.273 23 C 0.057 3.943 24 C -0.073 4.073 25 C -0.146 4.146 26 C 0.128 3.872 27 O -0.324 6.324 28 H 0.081 0.919 29 H 0.079 0.921 30 H 0.069 0.931 31 H 0.075 0.925 32 H 0.082 0.918 33 H 0.084 0.916 34 H 0.069 0.931 35 H 0.112 0.888 36 H 0.128 0.872 37 H 0.075 0.925 38 H 0.044 0.956 39 H 0.036 0.964 40 H 0.060 0.940 41 H 0.063 0.937 42 H 0.072 0.928 43 H 0.384 0.616 44 H 0.267 0.733 45 H 0.080 0.920 46 H 0.047 0.953 47 H 0.129 0.871 48 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.238 20.799 5.080 23.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.260 4.260 2 C 0.192 3.808 3 C -0.186 4.186 4 O -0.299 6.299 5 C 0.028 3.972 6 C -0.207 4.207 7 C -0.076 4.076 8 C -0.092 4.092 9 C -0.037 4.037 10 N -0.249 5.249 11 C -0.083 4.083 12 C -0.170 4.170 13 C 0.196 3.804 14 O -0.403 6.403 15 C -0.569 4.569 16 H 0.081 0.919 17 C -0.133 4.133 18 N -0.540 5.540 19 Si 0.728 3.272 20 H -0.205 1.205 21 H -0.211 1.211 22 H -0.198 1.198 23 C -0.070 4.070 24 C -0.091 4.091 25 C -0.165 4.165 26 C 0.084 3.916 27 O -0.241 6.241 28 H 0.100 0.900 29 H 0.098 0.902 30 H 0.088 0.912 31 H 0.094 0.906 32 H 0.101 0.899 33 H 0.103 0.897 34 H 0.087 0.913 35 H 0.130 0.870 36 H 0.145 0.855 37 H 0.093 0.907 38 H 0.062 0.938 39 H 0.055 0.945 40 H 0.078 0.922 41 H 0.081 0.919 42 H 0.091 0.909 43 H 0.235 0.765 44 H 0.077 0.923 45 H 0.098 0.902 46 H 0.065 0.935 47 H 0.146 0.854 48 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -9.197 21.456 5.728 24.037 hybrid contribution 0.462 -1.695 -0.776 1.920 sum -8.735 19.761 4.952 22.166 Atomic orbital electron populations 1.22839 0.94858 1.04106 1.04182 1.23137 0.91828 0.90790 0.75056 1.21651 1.03322 0.89997 1.03633 1.88294 1.69786 1.27772 1.44090 1.21484 0.99469 0.81663 0.94565 1.20198 1.09996 0.95448 0.95029 1.20587 0.97256 0.91695 0.98020 1.19778 1.00812 0.95798 0.92779 1.21163 0.92425 0.89419 1.00725 1.63726 1.09884 1.12343 1.38916 1.23067 0.95292 0.99275 0.90673 1.23169 0.98422 0.93492 1.01962 1.19712 0.86091 0.91293 0.83298 1.86065 1.41211 1.80679 1.32389 1.21610 1.27018 1.11148 0.97123 0.91949 1.25014 0.95681 0.97672 0.94909 1.69590 1.39054 1.39637 1.05725 0.86451 0.78844 0.82554 0.79315 1.20533 1.21116 1.19751 1.22861 0.99324 0.84973 0.99842 1.20972 0.96886 0.92791 0.98501 1.20464 1.06072 0.94071 0.95875 1.18448 0.97830 0.81987 0.93372 1.86259 1.78439 1.16999 1.42374 0.90035 0.90187 0.91179 0.90557 0.89911 0.89678 0.91297 0.86985 0.85453 0.90669 0.93759 0.94546 0.92208 0.91862 0.90943 0.76463 0.92296 0.90190 0.93485 0.85359 0.85296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.65 8.22 37.15 0.31 -1.34 16 2 C 0.27 2.78 1.51 -26.73 -0.04 2.74 16 3 C -0.13 -0.97 9.24 37.16 0.34 -0.63 16 4 O -0.38 -4.49 10.49 -59.11 -0.62 -5.11 16 5 C 0.10 1.11 6.18 36.05 0.22 1.33 16 6 C -0.21 -2.66 5.24 -104.44 -0.55 -3.20 16 7 C -0.06 -0.76 9.37 -39.58 -0.37 -1.13 16 8 C -0.09 -1.33 5.09 -104.61 -0.53 -1.86 16 9 C 0.09 1.47 4.72 -4.98 -0.02 1.45 16 10 N -0.52 -10.09 5.15 -232.68 -1.20 -11.29 16 11 C 0.04 0.88 5.60 -2.30 -0.01 0.87 16 12 C -0.13 -3.07 5.67 -24.60 -0.14 -3.21 16 13 C 0.24 5.85 0.85 -89.95 -0.08 5.77 16 14 O -0.59 -15.39 13.08 -35.23 -0.46 -15.85 16 15 C -0.53 -14.19 8.22 -34.44 -0.28 -14.47 16 16 H 0.06 1.66 7.53 -52.48 -0.40 1.26 16 17 C 0.07 1.82 5.28 -17.82 -0.09 1.73 16 18 N -0.90 -24.04 10.69 55.43 0.59 -23.44 16 19 Si 0.90 20.69 29.54 -169.99 -5.02 15.67 16 20 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 21 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 22 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 23 C 0.06 1.23 6.21 -2.83 -0.02 1.22 16 24 C -0.07 -1.02 8.92 -39.62 -0.35 -1.37 16 25 C -0.15 -1.96 9.97 -39.41 -0.39 -2.36 16 26 C 0.13 1.76 6.12 -39.23 -0.24 1.52 16 27 O -0.32 -4.23 9.87 -43.52 -0.43 -4.66 16 28 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.07 0.64 6.01 -51.93 -0.31 0.33 16 31 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.07 0.60 6.97 -51.93 -0.36 0.24 16 35 H 0.11 1.07 8.14 -51.93 -0.42 0.65 16 36 H 0.13 1.49 8.06 -52.49 -0.42 1.07 16 37 H 0.07 1.11 7.98 -51.93 -0.41 0.70 16 38 H 0.04 0.75 7.79 -51.93 -0.40 0.35 16 39 H 0.04 0.71 6.99 -51.93 -0.36 0.35 16 40 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 41 H 0.06 1.53 8.05 -51.93 -0.42 1.11 16 42 H 0.07 1.78 7.76 -51.93 -0.40 1.38 16 43 H 0.38 10.20 6.98 45.56 0.32 10.52 16 44 H 0.27 6.84 8.31 -40.82 -0.34 6.50 16 45 H 0.08 1.72 7.63 -51.93 -0.40 1.33 16 46 H 0.05 1.00 7.47 -51.93 -0.39 0.61 16 47 H 0.13 1.71 7.48 -52.49 -0.39 1.32 16 48 H 0.13 1.52 8.06 -52.49 -0.42 1.09 16 LS Contribution 376.66 15.07 5.68 5.68 Total: -1.00 -29.23 376.66 -10.59 -39.81 By element: Atomic # 1 Polarization: 19.02 SS G_CDS: -6.87 Total: 12.15 kcal Atomic # 6 Polarization: -10.70 SS G_CDS: -2.25 Total: -12.95 kcal Atomic # 7 Polarization: -34.13 SS G_CDS: -0.61 Total: -34.74 kcal Atomic # 8 Polarization: -24.12 SS G_CDS: -1.51 Total: -25.63 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.67 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -29.23 -10.59 -39.81 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592522239.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.696 kcal (2) G-P(sol) polarization free energy of solvation -29.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.811 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds