Wall clock time and date at job start Tue Mar 31 2020 18:05:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53007 * 109.61168 * 2 1 4 4 O 1.43268 * 109.61628 * 120.35006 * 2 1 3 5 5 C 1.43081 * 113.02409 * 54.27421 * 4 2 1 6 6 C 1.50786 * 109.30317 * 48.58369 * 5 4 2 7 7 C 1.38258 * 119.65298 * 164.04239 * 6 5 4 8 8 C 1.38212 * 120.10305 * 179.84387 * 7 6 5 9 9 C 1.50703 * 119.95318 * 179.97438 * 8 7 6 10 10 N 1.46897 * 109.46870 * 270.02281 * 9 8 7 11 11 C 1.47844 * 111.00095 * 290.84287 * 10 9 8 12 12 C 1.54904 * 104.79745 * 213.63977 * 11 10 9 13 13 C 1.55134 * 101.65565 * 37.06933 * 12 11 10 14 14 O 1.42902 * 110.70804 * 82.72773 * 13 12 11 15 15 C 1.50703 * 110.85930 * 205.89535 * 13 12 11 16 16 H 1.08004 * 119.99796 * 113.68477 * 15 13 12 17 17 C 1.37875 * 119.99966 * 293.68625 * 15 13 12 18 18 N 1.31514 * 119.99817 * 359.97438 * 17 15 13 19 19 Si 1.86802 * 119.99961 * 179.97438 * 17 15 13 20 20 H 1.48499 * 109.47146 * 90.00075 * 19 17 15 21 21 H 1.48495 * 109.46722 * 209.99992 * 19 17 15 22 22 H 1.48499 * 109.46893 * 329.99758 * 19 17 15 23 23 C 1.47447 * 110.99807 * 169.99991 * 10 9 8 24 24 C 1.38289 * 120.08715 * 359.96060 * 8 7 6 25 25 C 1.38088 * 120.03270 * 0.30684 * 24 8 7 26 26 C 1.38591 * 120.42488 * 343.93428 * 6 5 4 27 27 O 1.35966 * 120.54736 * 0.33994 * 26 6 5 28 28 H 1.09001 * 109.47532 * 299.64777 * 1 2 3 29 29 H 1.09002 * 109.47359 * 59.65083 * 1 2 3 30 30 H 1.09002 * 109.47061 * 179.64607 * 1 2 3 31 31 H 1.09001 * 109.46857 * 180.35126 * 3 2 1 32 32 H 1.08998 * 109.46583 * 300.35288 * 3 2 1 33 33 H 1.08996 * 109.46668 * 60.34885 * 3 2 1 34 34 H 1.08994 * 109.50056 * 288.63215 * 5 4 2 35 35 H 1.08999 * 109.52292 * 168.54597 * 5 4 2 36 36 H 1.07997 * 119.94314 * 359.87551 * 7 6 5 37 37 H 1.09001 * 109.47047 * 30.01995 * 9 8 7 38 38 H 1.09003 * 109.46872 * 150.02215 * 9 8 7 39 39 H 1.09004 * 110.37490 * 332.46965 * 11 10 9 40 40 H 1.09004 * 110.37381 * 94.80915 * 11 10 9 41 41 H 1.09003 * 110.99013 * 278.97608 * 12 11 10 42 42 H 1.08999 * 111.02624 * 155.17797 * 12 11 10 43 43 H 0.96706 * 113.99590 * 66.40511 * 14 13 12 44 44 H 0.97003 * 119.99672 * 179.97438 * 18 17 15 45 45 H 1.08995 * 109.89062 * 242.66088 * 23 10 9 46 46 H 1.08999 * 109.88521 * 3.85794 * 23 10 9 47 47 H 1.08002 * 119.97904 * 180.02562 * 24 8 7 48 48 H 1.08000 * 120.00619 * 179.75292 * 25 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0435 1.4413 0.0000 4 8 2.0109 -0.6819 1.1646 5 6 1.4745 -2.0012 1.3021 6 6 1.6104 -2.7336 -0.0089 7 6 1.4736 -4.1091 -0.0414 8 6 1.5931 -4.7895 -1.2385 9 6 1.4439 -6.2888 -1.2699 10 7 2.7564 -6.9158 -1.0642 11 6 3.6392 -6.6913 -2.2287 12 6 4.5030 -7.9736 -2.3233 13 6 3.4812 -9.0701 -1.9229 14 8 2.6813 -9.4493 -3.0447 15 6 4.1825 -10.2703 -1.3409 16 1 4.0406 -10.5273 -0.3015 17 6 5.0053 -11.0403 -2.1353 18 7 5.1777 -10.7276 -3.4011 19 14 5.8751 -12.5277 -1.4138 20 1 5.0153 -13.7282 -1.5704 21 1 7.1603 -12.7430 -2.1259 22 1 6.1414 -12.2940 0.0283 23 6 2.6204 -8.3684 -0.8512 24 6 1.8490 -4.0963 -2.4074 25 6 1.9920 -2.7231 -2.3794 26 6 1.8687 -2.0368 -1.1787 27 8 2.0102 -0.6846 -1.1607 28 1 -0.3634 0.5083 0.8931 29 1 -0.3634 0.5192 -0.8868 30 1 -0.3633 -1.0277 -0.0063 31 1 3.1335 1.4386 -0.0063 32 1 1.6762 1.9578 -0.8868 33 1 1.6865 1.9541 0.8931 34 1 0.4216 -1.9391 1.5767 35 1 2.0217 -2.5379 2.0771 36 1 1.2725 -4.6525 0.8700 37 1 0.7632 -6.6029 -0.4787 38 1 1.0430 -6.5938 -2.2366 39 1 3.0470 -6.5649 -3.1351 40 1 4.2716 -5.8191 -2.0629 41 1 5.3336 -7.9378 -1.6184 42 1 4.8633 -8.1283 -3.3403 43 1 3.1748 -9.8945 -3.7471 44 1 5.7568 -11.2691 -3.9599 45 1 2.9789 -8.6325 0.1436 46 1 1.5770 -8.6634 -0.9624 47 1 1.9417 -4.6297 -3.3419 48 1 2.1958 -2.1826 -3.2919 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592522239.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:05:47 Heat of formation + Delta-G solvation = -123.338296 kcal Electronic energy + Delta-G solvation = -29211.684837 eV Core-core repulsion = 25230.734575 eV Total energy + Delta-G solvation = -3980.950262 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.21842 -40.40400 -39.13594 -37.48081 -36.50259 -34.12465 -34.01088 -32.60788 -32.38290 -30.29948 -29.85686 -28.62671 -27.07651 -26.89105 -25.52525 -23.87427 -23.09694 -21.70856 -21.27936 -20.42589 -19.79252 -19.13617 -17.84387 -17.23106 -17.01258 -16.91171 -16.60908 -16.12621 -15.89505 -15.85963 -15.60232 -15.30425 -15.07364 -14.89394 -14.48709 -14.16437 -13.89591 -13.75542 -13.63299 -13.45206 -13.30025 -13.19004 -13.13136 -13.07565 -13.01753 -12.77126 -12.72244 -12.42182 -12.31683 -12.22738 -12.12890 -12.00235 -11.80307 -11.55961 -11.15423 -11.10503 -10.62571 -10.09957 -9.80341 -9.32086 -9.06933 -8.22305 -6.36789 0.23606 0.36262 1.40607 1.42580 1.52166 2.07358 2.38388 2.43957 2.65660 3.02138 3.30031 3.49837 3.60225 3.71641 3.78385 3.86518 3.91205 4.11312 4.25710 4.31343 4.31794 4.37375 4.41211 4.46297 4.53245 4.55679 4.61986 4.63771 4.65566 4.70455 4.76329 4.83313 4.88451 4.99373 5.03362 5.09831 5.12894 5.21571 5.27289 5.32189 5.48251 5.53661 5.62452 5.66871 5.80800 5.84131 5.96725 6.19219 6.23231 6.37983 6.67769 7.33894 7.43651 8.83186 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.030102 B = 0.002333 C = 0.002303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 929.942734 B =11998.726757 C =12152.907781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.252 3.748 3 C -0.128 4.128 4 O -0.394 6.394 5 C 0.101 3.899 6 C -0.208 4.208 7 C -0.057 4.057 8 C -0.105 4.105 9 C 0.094 3.906 10 N -0.522 5.522 11 C 0.059 3.941 12 C -0.126 4.126 13 C 0.221 3.779 14 O -0.599 6.599 15 C -0.556 4.556 16 H 0.057 0.943 17 C 0.027 3.973 18 N -0.916 5.916 19 Si 0.961 3.039 20 H -0.276 1.276 21 H -0.282 1.282 22 H -0.270 1.270 23 C 0.065 3.935 24 C -0.080 4.080 25 C -0.154 4.154 26 C 0.118 3.882 27 O -0.338 6.338 28 H 0.101 0.899 29 H 0.088 0.912 30 H 0.058 0.942 31 H 0.065 0.935 32 H 0.097 0.903 33 H 0.105 0.895 34 H 0.092 0.908 35 H 0.122 0.878 36 H 0.144 0.856 37 H 0.091 0.909 38 H 0.035 0.965 39 H 0.039 0.961 40 H 0.070 0.930 41 H 0.049 0.951 42 H 0.053 0.947 43 H 0.377 0.623 44 H 0.269 0.731 45 H 0.079 0.921 46 H 0.049 0.951 47 H 0.129 0.871 48 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.956 22.133 6.332 25.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.254 4.254 2 C 0.177 3.823 3 C -0.185 4.185 4 O -0.314 6.314 5 C 0.025 3.975 6 C -0.209 4.209 7 C -0.076 4.076 8 C -0.106 4.106 9 C -0.033 4.033 10 N -0.246 5.246 11 C -0.069 4.069 12 C -0.165 4.165 13 C 0.181 3.819 14 O -0.408 6.408 15 C -0.594 4.594 16 H 0.076 0.924 17 C -0.173 4.173 18 N -0.556 5.556 19 Si 0.787 3.213 20 H -0.202 1.202 21 H -0.207 1.207 22 H -0.195 1.195 23 C -0.063 4.063 24 C -0.098 4.098 25 C -0.172 4.172 26 C 0.073 3.927 27 O -0.255 6.255 28 H 0.120 0.880 29 H 0.107 0.893 30 H 0.077 0.923 31 H 0.084 0.916 32 H 0.116 0.884 33 H 0.124 0.876 34 H 0.110 0.890 35 H 0.140 0.860 36 H 0.161 0.839 37 H 0.109 0.891 38 H 0.054 0.946 39 H 0.057 0.943 40 H 0.089 0.911 41 H 0.067 0.933 42 H 0.071 0.929 43 H 0.228 0.772 44 H 0.079 0.921 45 H 0.097 0.903 46 H 0.067 0.933 47 H 0.147 0.853 48 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -9.927 22.811 6.987 25.840 hybrid contribution 0.670 -2.025 -1.168 2.432 sum -9.257 20.786 5.818 23.486 Atomic orbital electron populations 1.22815 0.93096 1.03842 1.05665 1.23697 0.93298 0.91378 0.73883 1.21749 1.02699 0.88632 1.05387 1.88279 1.70427 1.28142 1.44588 1.21655 1.01025 0.81239 0.93543 1.20464 1.09096 0.95436 0.95886 1.20754 0.96690 0.92007 0.98116 1.19671 1.02524 0.94735 0.93659 1.21175 0.90888 0.90411 1.00834 1.63734 1.11633 1.10782 1.38469 1.22907 0.95001 0.97759 0.91213 1.22988 0.98188 0.95089 1.00225 1.19960 0.86999 0.91407 0.83566 1.86059 1.41523 1.80663 1.32594 1.21895 1.27907 1.12422 0.97170 0.92426 1.25718 0.96232 1.00057 0.95311 1.69675 1.39190 1.40342 1.06437 0.85512 0.77800 0.79400 0.78635 1.20196 1.20706 1.19471 1.22720 0.98733 0.86192 0.98645 1.21022 0.97149 0.93156 0.98495 1.20622 1.06044 0.93977 0.96572 1.18669 0.97636 0.82625 0.93756 1.86250 1.78726 1.16638 1.43881 0.87993 0.89284 0.92252 0.91623 0.88436 0.87643 0.89041 0.85978 0.83858 0.89112 0.94629 0.94299 0.91149 0.93268 0.92863 0.77209 0.92144 0.90305 0.93274 0.85284 0.84201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.73 8.22 71.98 0.59 -2.14 16 2 C 0.25 4.75 1.51 30.59 0.05 4.80 16 3 C -0.13 -1.66 9.24 71.98 0.67 -0.99 16 4 O -0.39 -8.57 10.49 -126.15 -1.32 -9.89 16 5 C 0.10 1.94 6.18 71.26 0.44 2.38 16 6 C -0.21 -5.03 5.24 -19.75 -0.10 -5.13 16 7 C -0.06 -1.42 9.37 22.27 0.21 -1.21 16 8 C -0.11 -2.95 5.09 -19.86 -0.10 -3.05 16 9 C 0.09 2.95 4.72 85.56 0.40 3.36 16 10 N -0.52 -19.68 5.15 -890.07 -4.59 -24.27 16 11 C 0.06 2.33 5.60 86.77 0.49 2.81 16 12 C -0.13 -5.96 5.67 31.98 0.18 -5.78 16 13 C 0.22 11.04 0.85 -10.36 -0.01 11.03 16 14 O -0.60 -31.54 13.08 -148.98 -1.95 -33.49 16 15 C -0.56 -30.00 8.22 25.60 0.21 -29.79 16 16 H 0.06 3.08 7.53 -2.91 -0.02 3.06 16 17 C 0.03 1.42 5.28 84.65 0.45 1.86 16 18 N -0.92 -49.45 10.69 21.45 0.23 -49.22 16 19 Si 0.96 42.44 29.54 68.60 2.03 44.46 16 20 H -0.28 -12.00 7.11 99.48 0.71 -11.30 16 21 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 22 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 23 C 0.06 2.78 6.21 86.65 0.54 3.32 16 24 C -0.08 -2.17 8.92 22.25 0.20 -1.98 16 25 C -0.15 -4.01 9.97 22.38 0.22 -3.79 16 26 C 0.12 3.11 6.12 22.50 0.14 3.25 16 27 O -0.34 -8.42 9.87 -70.34 -0.69 -9.12 16 28 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 29 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 30 H 0.06 0.96 6.01 -2.39 -0.01 0.94 16 31 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 32 H 0.10 0.95 8.14 -2.39 -0.02 0.93 16 33 H 0.10 0.92 8.14 -2.39 -0.02 0.90 16 34 H 0.09 1.34 6.97 -2.39 -0.02 1.32 16 35 H 0.12 2.06 8.14 -2.39 -0.02 2.04 16 36 H 0.14 3.02 8.06 -2.91 -0.02 3.00 16 37 H 0.09 2.54 7.98 -2.39 -0.02 2.52 16 38 H 0.04 1.18 7.79 -2.39 -0.02 1.16 16 39 H 0.04 1.52 6.99 -2.38 -0.02 1.50 16 40 H 0.07 2.64 8.14 -2.39 -0.02 2.62 16 41 H 0.05 2.42 8.05 -2.39 -0.02 2.40 16 42 H 0.05 2.68 7.76 -2.39 -0.02 2.66 16 43 H 0.38 20.54 6.98 -74.05 -0.52 20.03 16 44 H 0.27 13.84 8.31 -92.71 -0.77 13.07 16 45 H 0.08 3.38 7.63 -2.39 -0.02 3.36 16 46 H 0.05 2.06 7.47 -2.39 -0.02 2.04 16 47 H 0.13 3.40 7.48 -2.91 -0.02 3.38 16 48 H 0.14 3.20 8.06 -2.91 -0.02 3.18 16 Total: -1.00 -61.99 376.66 -1.28 -63.28 By element: Atomic # 1 Polarization: 38.85 SS G_CDS: 0.45 Total: 39.30 kcal Atomic # 6 Polarization: -25.63 SS G_CDS: 4.57 Total: -21.06 kcal Atomic # 7 Polarization: -69.13 SS G_CDS: -4.36 Total: -73.49 kcal Atomic # 8 Polarization: -48.53 SS G_CDS: -3.97 Total: -52.49 kcal Atomic # 14 Polarization: 42.44 SS G_CDS: 2.03 Total: 44.46 kcal Total: -61.99 -1.28 -63.28 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592522239.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.060 kcal (2) G-P(sol) polarization free energy of solvation -61.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.278 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds