Wall clock time and date at job start Tue Mar 31 2020 17:27:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38289 * 119.94481 * 2 1 4 4 C 1.38123 * 120.05466 * 180.02562 * 3 2 1 5 5 C 1.38756 * 119.94503 * 359.97438 * 4 3 2 6 6 O 1.35902 * 120.05304 * 180.02562 * 5 4 3 7 7 C 1.42900 * 117.00168 * 359.97438 * 6 5 4 8 8 C 1.52996 * 109.47117 * 180.02562 * 7 6 5 9 9 C 1.50695 * 109.47349 * 180.02562 * 8 7 6 10 10 O 1.21280 * 119.99679 * 0.02562 * 9 8 7 11 11 N 1.34775 * 120.00178 * 179.97438 * 9 8 7 12 12 C 1.47022 * 125.65138 * 359.97438 * 11 9 8 13 13 C 1.54322 * 107.27482 * 178.98361 * 12 11 9 14 14 C 1.55157 * 102.93912 * 337.80443 * 13 12 11 15 15 O 1.42900 * 111.00520 * 277.38901 * 14 13 12 16 16 C 1.50702 * 111.00344 * 153.57728 * 14 13 12 17 17 H 1.08002 * 120.00299 * 241.45696 * 16 14 13 18 18 C 1.37884 * 119.99942 * 61.17254 * 16 14 13 19 19 N 1.31514 * 119.99698 * 0.28408 * 18 16 14 20 20 Si 1.86794 * 119.99837 * 180.27476 * 18 16 14 21 21 H 1.48504 * 109.47196 * 60.00645 * 20 18 16 22 22 H 1.48504 * 109.46887 * 180.02562 * 20 18 16 23 23 H 1.48502 * 109.47679 * 300.00280 * 20 18 16 24 24 C 1.47424 * 125.64952 * 180.02562 * 11 9 8 25 25 C 1.38708 * 119.88771 * 0.27668 * 5 4 3 26 26 C 1.38168 * 119.94286 * 359.45177 * 25 5 4 27 27 C 1.50701 * 119.97210 * 180.27551 * 26 25 5 28 28 H 1.09000 * 109.47619 * 89.99946 * 1 2 3 29 29 H 1.09004 * 109.47348 * 210.00156 * 1 2 3 30 30 H 1.09002 * 109.47272 * 329.99868 * 1 2 3 31 31 H 1.07995 * 119.97298 * 0.02562 * 3 2 1 32 32 H 1.08006 * 120.02713 * 179.97438 * 4 3 2 33 33 H 1.08999 * 109.46848 * 60.00445 * 7 6 5 34 34 H 1.09003 * 109.46997 * 300.00474 * 7 6 5 35 35 H 1.09005 * 109.47314 * 59.99634 * 8 7 6 36 36 H 1.09003 * 109.47348 * 299.99982 * 8 7 6 37 37 H 1.09003 * 109.88076 * 59.56192 * 12 11 9 38 38 H 1.09001 * 110.00358 * 298.47568 * 12 11 9 39 39 H 1.08995 * 110.71729 * 219.44160 * 13 12 11 40 40 H 1.08996 * 110.71909 * 96.16437 * 13 12 11 41 41 H 0.96704 * 113.99783 * 295.41666 * 15 14 13 42 42 H 0.97005 * 119.99651 * 179.97438 * 19 18 16 43 43 H 1.09007 * 110.36818 * 85.24741 * 24 11 9 44 44 H 1.09006 * 110.37032 * 322.92419 * 24 11 9 45 45 H 1.08004 * 120.02752 * 179.72428 * 25 5 4 46 46 H 1.09000 * 109.46755 * 270.29713 * 27 26 25 47 47 H 1.09005 * 109.46987 * 30.29162 * 27 26 25 48 48 H 1.08998 * 109.47193 * 150.29532 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1972 1.1983 0.0000 4 6 3.5785 1.2009 -0.0005 5 6 4.2734 -0.0001 -0.0005 6 8 5.6324 0.0000 -0.0005 7 6 6.2812 1.2732 -0.0011 8 6 7.7979 1.0728 -0.0017 9 6 8.4821 2.4155 -0.0016 10 8 7.8216 3.4326 -0.0007 11 7 9.8280 2.4860 -0.0015 12 6 10.7463 1.3378 -0.0010 13 6 12.1832 1.9001 -0.0272 14 6 11.9884 3.3239 -0.6123 15 8 11.9206 3.2865 -2.0392 16 6 13.0824 4.2519 -0.1506 17 1 12.8380 5.1251 0.4360 18 6 14.3959 3.9830 -0.4722 19 7 14.6935 2.9196 -1.1866 20 14 15.7526 5.1291 0.1066 21 1 15.7515 5.1879 1.5904 22 1 17.0651 4.6218 -0.3681 23 1 15.5200 6.4889 -0.4429 24 6 10.6234 3.7273 -0.0010 25 6 3.5787 -1.2006 -0.0058 26 6 2.1970 -1.1979 0.0004 27 6 1.4416 -2.5019 0.0010 28 1 -0.3634 0.0000 -1.0276 29 1 -0.3634 -0.8900 0.5139 30 1 -0.3634 0.8900 0.5139 31 1 1.6559 2.1328 0.0004 32 1 4.1171 2.1371 -0.0010 33 1 5.9883 1.8306 0.8887 34 1 5.9882 1.8299 -0.8913 35 1 8.0905 0.5155 -0.8916 36 1 8.0912 0.5160 0.8884 37 1 10.5723 0.7236 -0.8845 38 1 10.5977 0.7420 0.8996 39 1 12.8202 1.3000 -0.6768 40 1 12.5961 1.9504 0.9802 41 1 12.7376 2.9915 -2.4642 42 1 15.6176 2.7306 -1.4131 43 1 10.7567 4.0919 1.0176 44 1 10.1416 4.4869 -0.6167 45 1 4.1173 -2.1367 -0.0103 46 1 1.2594 -2.8166 -1.0266 47 1 2.0296 -3.2622 0.5151 48 1 0.4894 -2.3699 0.5148 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592837509.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:27:52 Heat of formation + Delta-G solvation = -110.243945 kcal Electronic energy + Delta-G solvation = -27817.316069 eV Core-core repulsion = 23836.933621 eV Total energy + Delta-G solvation = -3980.382448 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.44063 -39.58197 -38.18294 -37.28452 -34.35813 -33.06025 -32.53974 -32.26754 -31.42316 -29.75258 -28.39714 -27.75502 -26.19766 -25.49601 -23.90674 -22.44063 -22.02388 -20.58849 -19.78715 -18.84415 -17.97214 -17.23498 -16.62536 -16.43402 -16.24395 -15.44094 -15.23190 -15.00466 -14.95025 -14.54808 -14.38837 -14.07482 -13.86301 -13.74368 -13.40173 -13.11835 -13.07902 -12.83928 -12.54943 -12.29117 -12.23501 -12.04801 -11.86547 -11.71340 -11.53844 -11.45155 -11.39254 -11.34509 -10.92495 -10.86607 -10.70714 -10.63611 -10.54390 -10.08021 -9.56521 -9.40535 -8.97816 -8.73056 -8.28092 -8.17515 -8.08165 -6.33053 -4.41650 1.13617 1.25140 2.82953 2.94630 3.18854 3.24006 3.27291 3.53234 3.68630 4.23096 4.54621 4.57499 4.72898 4.78604 4.87220 4.90455 4.92795 4.97424 5.05484 5.15404 5.22648 5.32762 5.38721 5.45729 5.50042 5.54167 5.56307 5.62677 5.67192 5.71042 5.81759 5.83279 5.89284 5.97580 6.16106 6.21568 6.24946 6.37413 6.44857 6.58219 6.63067 6.83591 6.89562 7.25493 7.29959 7.30063 7.68567 7.94994 8.03481 8.49424 8.61250 9.25652 9.34659 10.74099 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.039625 B = 0.001813 C = 0.001767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 706.454972 B =15439.413953 C =15840.163577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.131 4.131 3 C -0.076 4.076 4 C -0.209 4.209 5 C 0.135 3.865 6 O -0.318 6.318 7 C 0.077 3.923 8 C -0.135 4.135 9 C 0.528 3.472 10 O -0.558 6.558 11 N -0.603 5.603 12 C 0.096 3.904 13 C -0.136 4.136 14 C 0.247 3.753 15 O -0.583 6.583 16 C -0.537 4.537 17 H 0.064 0.936 18 C 0.073 3.927 19 N -0.895 5.895 20 Si 0.903 3.097 21 H -0.275 1.275 22 H -0.286 1.286 23 H -0.274 1.274 24 C 0.120 3.880 25 C -0.152 4.152 26 C -0.051 4.051 27 C -0.117 4.117 28 H 0.066 0.934 29 H 0.067 0.933 30 H 0.062 0.938 31 H 0.124 0.876 32 H 0.132 0.868 33 H 0.071 0.929 34 H 0.072 0.928 35 H 0.102 0.898 36 H 0.101 0.899 37 H 0.060 0.940 38 H 0.055 0.945 39 H 0.088 0.912 40 H 0.068 0.932 41 H 0.381 0.619 42 H 0.269 0.731 43 H 0.073 0.927 44 H 0.071 0.929 45 H 0.129 0.871 46 H 0.072 0.928 47 H 0.067 0.933 48 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.995 -10.698 2.791 23.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.132 4.132 3 C -0.094 4.094 4 C -0.227 4.227 5 C 0.089 3.911 6 O -0.231 6.231 7 C 0.002 3.998 8 C -0.175 4.175 9 C 0.316 3.684 10 O -0.438 6.438 11 N -0.335 5.335 12 C -0.027 4.027 13 C -0.174 4.174 14 C 0.207 3.793 15 O -0.392 6.392 16 C -0.576 4.576 17 H 0.083 0.917 18 C -0.130 4.130 19 N -0.534 5.534 20 Si 0.731 3.269 21 H -0.200 1.200 22 H -0.211 1.211 23 H -0.200 1.200 24 C -0.001 4.001 25 C -0.171 4.171 26 C -0.051 4.051 27 C -0.173 4.173 28 H 0.085 0.915 29 H 0.086 0.914 30 H 0.081 0.919 31 H 0.142 0.858 32 H 0.149 0.851 33 H 0.089 0.911 34 H 0.090 0.910 35 H 0.121 0.879 36 H 0.119 0.881 37 H 0.078 0.922 38 H 0.074 0.926 39 H 0.106 0.894 40 H 0.087 0.913 41 H 0.231 0.769 42 H 0.079 0.921 43 H 0.091 0.909 44 H 0.089 0.911 45 H 0.147 0.853 46 H 0.091 0.909 47 H 0.086 0.914 48 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -21.720 -10.222 2.831 24.172 hybrid contribution 1.601 0.547 0.197 1.703 sum -20.119 -9.676 3.028 22.529 Atomic orbital electron populations 1.20770 0.91302 1.02567 1.02062 1.19644 0.96030 0.92525 1.04952 1.20816 0.93299 0.97577 0.97707 1.21360 0.95418 0.97512 1.08456 1.18953 0.82283 0.94036 0.95802 1.85973 1.16307 1.32416 1.88437 1.22454 0.91361 0.82994 1.02990 1.21425 0.93406 0.96827 1.05822 1.19737 0.81284 0.90341 0.76999 1.90676 1.63975 1.37209 1.51975 1.48581 1.04358 1.09955 1.70636 1.22243 0.92107 0.88396 0.99912 1.23175 0.91598 1.00200 1.02468 1.19611 0.89534 0.90823 0.79337 1.86135 1.41755 1.90753 1.20532 1.21403 0.91033 1.10214 1.34923 0.91733 1.24992 0.98787 0.95091 0.94111 1.69707 1.19918 1.25959 1.37793 0.86466 0.80317 0.80973 0.79177 1.20035 1.21100 1.19983 1.22402 0.91535 0.85863 1.00335 1.20256 0.93029 0.96329 1.07479 1.19504 0.92523 0.95069 0.98039 1.20866 1.00050 0.93861 1.02528 0.91523 0.91391 0.91874 0.85842 0.85054 0.91070 0.91015 0.87923 0.88065 0.92192 0.92636 0.89396 0.91303 0.76864 0.92115 0.90902 0.91051 0.85266 0.90934 0.91430 0.90981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.73 9.60 36.00 0.35 -0.39 16 2 C -0.13 -1.24 5.88 -104.60 -0.62 -1.86 16 3 C -0.08 -0.78 9.69 -39.60 -0.38 -1.16 16 4 C -0.21 -2.46 9.04 -39.43 -0.36 -2.82 16 5 C 0.13 1.69 6.69 -39.22 -0.26 1.43 16 6 O -0.32 -4.21 10.14 -19.43 -0.20 -4.41 16 7 C 0.08 1.03 4.03 37.16 0.15 1.18 16 8 C -0.13 -1.83 5.26 -27.89 -0.15 -1.98 16 9 C 0.53 9.54 7.85 -10.99 -0.09 9.46 16 10 O -0.56 -11.70 16.24 5.56 0.09 -11.61 16 11 N -0.60 -11.57 3.33 -170.52 -0.57 -12.14 16 12 C 0.10 1.67 6.49 -3.06 -0.02 1.65 16 13 C -0.14 -2.82 5.38 -24.90 -0.13 -2.95 16 14 C 0.25 5.82 0.88 -89.62 -0.08 5.74 16 15 O -0.58 -14.52 13.18 -35.23 -0.46 -14.98 16 16 C -0.54 -13.69 8.27 -34.44 -0.28 -13.97 16 17 H 0.06 1.64 7.79 -52.49 -0.41 1.23 16 18 C 0.07 1.83 5.27 -17.82 -0.09 1.74 16 19 N -0.89 -22.47 10.73 55.43 0.59 -21.87 16 20 Si 0.90 19.83 29.54 -169.99 -5.02 14.81 16 21 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 22 H -0.29 -6.22 7.11 56.52 0.40 -5.82 16 23 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 24 C 0.12 2.62 6.08 -2.53 -0.02 2.61 16 25 C -0.15 -1.68 9.64 -39.43 -0.38 -2.06 16 26 C -0.05 -0.49 5.88 -104.65 -0.62 -1.11 16 27 C -0.12 -0.77 9.60 36.01 0.35 -0.42 16 28 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.07 0.37 5.94 -51.93 -0.31 0.06 16 30 H 0.06 0.37 8.08 -51.93 -0.42 -0.05 16 31 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 32 H 0.13 1.51 6.30 -52.48 -0.33 1.18 16 33 H 0.07 0.95 7.62 -51.93 -0.40 0.55 16 34 H 0.07 0.98 7.62 -51.93 -0.40 0.59 16 35 H 0.10 1.29 8.14 -51.93 -0.42 0.87 16 36 H 0.10 1.21 8.14 -51.93 -0.42 0.78 16 37 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 38 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 39 H 0.09 1.91 7.54 -51.93 -0.39 1.52 16 40 H 0.07 1.45 8.03 -51.93 -0.42 1.03 16 41 H 0.38 9.47 7.51 45.56 0.34 9.81 16 42 H 0.27 6.51 8.31 -40.82 -0.34 6.18 16 43 H 0.07 1.54 8.03 -51.92 -0.42 1.13 16 44 H 0.07 1.66 8.04 -51.93 -0.42 1.25 16 45 H 0.13 1.26 8.06 -52.48 -0.42 0.84 16 46 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 47 H 0.07 0.40 8.09 -51.93 -0.42 -0.02 16 48 H 0.07 0.39 5.94 -51.93 -0.31 0.08 16 LS Contribution 389.80 15.07 5.87 5.87 Total: -1.00 -28.68 389.80 -9.13 -37.81 By element: Atomic # 1 Polarization: 18.25 SS G_CDS: -6.80 Total: 11.45 kcal Atomic # 6 Polarization: -2.29 SS G_CDS: -2.63 Total: -4.92 kcal Atomic # 7 Polarization: -34.04 SS G_CDS: 0.03 Total: -34.01 kcal Atomic # 8 Polarization: -30.42 SS G_CDS: -0.57 Total: -31.00 kcal Atomic # 14 Polarization: 19.83 SS G_CDS: -5.02 Total: 14.81 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -28.68 -9.13 -37.81 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592837509.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.437 kcal (2) G-P(sol) polarization free energy of solvation -28.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.807 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds