Wall clock time and date at job start Tue Mar 31 2020 17:27:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38289 * 119.94481 * 2 1 4 4 C 1.38123 * 120.05466 * 180.02562 * 3 2 1 5 5 C 1.38756 * 119.94503 * 359.97438 * 4 3 2 6 6 O 1.35902 * 120.05304 * 180.02562 * 5 4 3 7 7 C 1.42900 * 117.00168 * 359.97438 * 6 5 4 8 8 C 1.52996 * 109.47117 * 180.02562 * 7 6 5 9 9 C 1.50695 * 109.47349 * 180.02562 * 8 7 6 10 10 O 1.21280 * 119.99679 * 0.02562 * 9 8 7 11 11 N 1.34775 * 120.00178 * 179.97438 * 9 8 7 12 12 C 1.47022 * 125.65138 * 359.97438 * 11 9 8 13 13 C 1.54322 * 107.27482 * 178.98361 * 12 11 9 14 14 C 1.55157 * 102.93912 * 337.80443 * 13 12 11 15 15 O 1.42900 * 111.00520 * 277.38901 * 14 13 12 16 16 C 1.50702 * 111.00344 * 153.57728 * 14 13 12 17 17 H 1.08002 * 120.00299 * 241.45696 * 16 14 13 18 18 C 1.37884 * 119.99942 * 61.17254 * 16 14 13 19 19 N 1.31514 * 119.99698 * 0.28408 * 18 16 14 20 20 Si 1.86794 * 119.99837 * 180.27476 * 18 16 14 21 21 H 1.48504 * 109.47196 * 60.00645 * 20 18 16 22 22 H 1.48504 * 109.46887 * 180.02562 * 20 18 16 23 23 H 1.48502 * 109.47679 * 300.00280 * 20 18 16 24 24 C 1.47424 * 125.64952 * 180.02562 * 11 9 8 25 25 C 1.38708 * 119.88771 * 0.27668 * 5 4 3 26 26 C 1.38168 * 119.94286 * 359.45177 * 25 5 4 27 27 C 1.50701 * 119.97210 * 180.27551 * 26 25 5 28 28 H 1.09000 * 109.47619 * 89.99946 * 1 2 3 29 29 H 1.09004 * 109.47348 * 210.00156 * 1 2 3 30 30 H 1.09002 * 109.47272 * 329.99868 * 1 2 3 31 31 H 1.07995 * 119.97298 * 0.02562 * 3 2 1 32 32 H 1.08006 * 120.02713 * 179.97438 * 4 3 2 33 33 H 1.08999 * 109.46848 * 60.00445 * 7 6 5 34 34 H 1.09003 * 109.46997 * 300.00474 * 7 6 5 35 35 H 1.09005 * 109.47314 * 59.99634 * 8 7 6 36 36 H 1.09003 * 109.47348 * 299.99982 * 8 7 6 37 37 H 1.09003 * 109.88076 * 59.56192 * 12 11 9 38 38 H 1.09001 * 110.00358 * 298.47568 * 12 11 9 39 39 H 1.08995 * 110.71729 * 219.44160 * 13 12 11 40 40 H 1.08996 * 110.71909 * 96.16437 * 13 12 11 41 41 H 0.96704 * 113.99783 * 295.41666 * 15 14 13 42 42 H 0.97005 * 119.99651 * 179.97438 * 19 18 16 43 43 H 1.09007 * 110.36818 * 85.24741 * 24 11 9 44 44 H 1.09006 * 110.37032 * 322.92419 * 24 11 9 45 45 H 1.08004 * 120.02752 * 179.72428 * 25 5 4 46 46 H 1.09000 * 109.46755 * 270.29713 * 27 26 25 47 47 H 1.09005 * 109.46987 * 30.29162 * 27 26 25 48 48 H 1.08998 * 109.47193 * 150.29532 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1972 1.1983 0.0000 4 6 3.5785 1.2009 -0.0005 5 6 4.2734 -0.0001 -0.0005 6 8 5.6324 0.0000 -0.0005 7 6 6.2812 1.2732 -0.0011 8 6 7.7979 1.0728 -0.0017 9 6 8.4821 2.4155 -0.0016 10 8 7.8216 3.4326 -0.0007 11 7 9.8280 2.4860 -0.0015 12 6 10.7463 1.3378 -0.0010 13 6 12.1832 1.9001 -0.0272 14 6 11.9884 3.3239 -0.6123 15 8 11.9206 3.2865 -2.0392 16 6 13.0824 4.2519 -0.1506 17 1 12.8380 5.1251 0.4360 18 6 14.3959 3.9830 -0.4722 19 7 14.6935 2.9196 -1.1866 20 14 15.7526 5.1291 0.1066 21 1 15.7515 5.1879 1.5904 22 1 17.0651 4.6218 -0.3681 23 1 15.5200 6.4889 -0.4429 24 6 10.6234 3.7273 -0.0010 25 6 3.5787 -1.2006 -0.0058 26 6 2.1970 -1.1979 0.0004 27 6 1.4416 -2.5019 0.0010 28 1 -0.3634 0.0000 -1.0276 29 1 -0.3634 -0.8900 0.5139 30 1 -0.3634 0.8900 0.5139 31 1 1.6559 2.1328 0.0004 32 1 4.1171 2.1371 -0.0010 33 1 5.9883 1.8306 0.8887 34 1 5.9882 1.8299 -0.8913 35 1 8.0905 0.5155 -0.8916 36 1 8.0912 0.5160 0.8884 37 1 10.5723 0.7236 -0.8845 38 1 10.5977 0.7420 0.8996 39 1 12.8202 1.3000 -0.6768 40 1 12.5961 1.9504 0.9802 41 1 12.7376 2.9915 -2.4642 42 1 15.6176 2.7306 -1.4131 43 1 10.7567 4.0919 1.0176 44 1 10.1416 4.4869 -0.6167 45 1 4.1173 -2.1367 -0.0103 46 1 1.2594 -2.8166 -1.0266 47 1 2.0296 -3.2622 0.5151 48 1 0.4894 -2.3699 0.5148 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592837509.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:27:51 Heat of formation + Delta-G solvation = -127.064653 kcal Electronic energy + Delta-G solvation = -27818.045470 eV Core-core repulsion = 23836.933621 eV Total energy + Delta-G solvation = -3981.111849 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.41342 -40.96519 -39.25067 -38.76042 -36.10967 -34.21810 -33.91060 -33.36928 -32.42078 -31.32671 -30.01578 -28.51000 -27.23682 -26.81867 -25.20084 -23.69862 -23.01223 -21.64377 -21.35305 -20.25579 -19.19091 -18.91408 -17.91177 -17.56567 -17.21597 -16.93192 -16.63447 -16.37817 -16.23325 -15.87993 -15.41636 -15.14081 -15.04264 -14.79352 -14.57913 -14.23390 -14.15387 -13.86111 -13.60904 -13.55034 -13.46148 -13.28630 -13.20399 -13.03705 -12.79290 -12.68202 -12.59423 -12.51316 -12.44126 -12.28510 -12.07536 -11.86118 -11.68568 -11.59367 -11.28273 -11.03762 -10.64472 -10.16300 -9.75351 -9.62817 -8.99730 -8.24382 -6.39527 0.34391 0.44064 1.43242 1.45296 1.50826 1.52862 1.67779 2.35871 2.44447 2.73691 3.00634 3.48897 3.69715 3.82672 3.85444 3.87684 3.93225 4.03162 4.06943 4.22850 4.31205 4.34825 4.35942 4.37008 4.41976 4.58264 4.64902 4.66353 4.73218 4.76299 4.82437 4.84465 4.88301 4.96579 5.03311 5.17251 5.21596 5.23645 5.24236 5.40114 5.45130 5.45514 5.55239 5.72643 5.77133 5.88581 6.06787 6.38362 6.55172 6.64430 7.03658 7.30606 7.39144 8.80981 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.039625 B = 0.001813 C = 0.001767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 706.454972 B =15439.413953 C =15840.163577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.134 4.134 3 C -0.086 4.086 4 C -0.225 4.225 5 C 0.108 3.892 6 O -0.323 6.323 7 C 0.085 3.915 8 C -0.121 4.121 9 C 0.525 3.475 10 O -0.593 6.593 11 N -0.608 5.608 12 C 0.102 3.898 13 C -0.127 4.127 14 C 0.233 3.767 15 O -0.593 6.593 16 C -0.564 4.564 17 H 0.054 0.946 18 C 0.038 3.962 19 N -0.905 5.905 20 Si 0.958 3.042 21 H -0.271 1.271 22 H -0.279 1.279 23 H -0.279 1.279 24 C 0.125 3.875 25 C -0.162 4.162 26 C -0.055 4.055 27 C -0.115 4.115 28 H 0.075 0.925 29 H 0.082 0.918 30 H 0.070 0.930 31 H 0.139 0.861 32 H 0.124 0.876 33 H 0.066 0.934 34 H 0.061 0.939 35 H 0.119 0.881 36 H 0.127 0.873 37 H 0.076 0.924 38 H 0.093 0.907 39 H 0.076 0.924 40 H 0.063 0.937 41 H 0.378 0.622 42 H 0.271 0.729 43 H 0.074 0.926 44 H 0.046 0.954 45 H 0.138 0.862 46 H 0.082 0.918 47 H 0.074 0.926 48 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.368 -12.648 3.408 25.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.134 4.134 3 C -0.104 4.104 4 C -0.244 4.244 5 C 0.063 3.937 6 O -0.237 6.237 7 C 0.009 3.991 8 C -0.161 4.161 9 C 0.315 3.685 10 O -0.475 6.475 11 N -0.340 5.340 12 C -0.019 4.019 13 C -0.165 4.165 14 C 0.192 3.808 15 O -0.402 6.402 16 C -0.602 4.602 17 H 0.073 0.927 18 C -0.164 4.164 19 N -0.543 5.543 20 Si 0.784 3.216 21 H -0.196 1.196 22 H -0.204 1.204 23 H -0.205 1.205 24 C 0.002 3.998 25 C -0.181 4.181 26 C -0.055 4.055 27 C -0.172 4.172 28 H 0.094 0.906 29 H 0.101 0.899 30 H 0.089 0.911 31 H 0.157 0.843 32 H 0.142 0.858 33 H 0.084 0.916 34 H 0.079 0.921 35 H 0.137 0.863 36 H 0.145 0.855 37 H 0.095 0.905 38 H 0.111 0.889 39 H 0.095 0.905 40 H 0.081 0.919 41 H 0.228 0.772 42 H 0.081 0.919 43 H 0.092 0.908 44 H 0.065 0.935 45 H 0.156 0.844 46 H 0.101 0.899 47 H 0.093 0.907 48 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -23.105 -12.200 3.451 26.355 hybrid contribution 1.947 1.172 -0.021 2.273 sum -21.158 -11.028 3.430 24.105 Atomic orbital electron populations 1.20837 0.89057 1.03727 1.02974 1.20060 0.97741 0.92130 1.03494 1.21097 0.92851 0.98907 0.97512 1.21438 0.96312 0.97167 1.09472 1.19229 0.82002 0.94945 0.97550 1.85926 1.16957 1.31864 1.88935 1.22274 0.91337 0.83197 1.02293 1.21351 0.92902 0.94037 1.07784 1.20498 0.80646 0.91667 0.75653 1.90659 1.64553 1.38998 1.53333 1.48637 1.04972 1.09359 1.70998 1.22291 0.89274 0.87782 1.02588 1.22952 0.93841 0.98308 1.01417 1.19793 0.89882 0.92428 0.78648 1.86123 1.41555 1.90925 1.21597 1.21639 0.92276 1.10690 1.35625 0.92748 1.25584 1.00302 0.96304 0.94173 1.69769 1.20318 1.26496 1.37746 0.85612 0.78164 0.78999 0.78825 1.19615 1.20425 1.20499 1.22152 0.91166 0.86750 0.99686 1.20513 0.93881 0.96143 1.07539 1.19919 0.92208 0.96601 0.96819 1.20939 1.00412 0.92308 1.03492 0.90599 0.89898 0.91131 0.84276 0.85761 0.91612 0.92115 0.86254 0.85479 0.90544 0.88882 0.90545 0.91870 0.77238 0.91922 0.90782 0.93533 0.84396 0.89910 0.90727 0.89447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.16 9.60 71.23 0.68 -0.47 16 2 C -0.13 -2.31 5.88 -19.85 -0.12 -2.43 16 3 C -0.09 -1.70 9.69 22.25 0.22 -1.48 16 4 C -0.23 -5.38 9.04 22.37 0.20 -5.17 16 5 C 0.11 2.69 6.69 22.51 0.15 2.84 16 6 O -0.32 -8.38 10.14 -92.44 -0.94 -9.32 16 7 C 0.08 2.22 4.03 71.98 0.29 2.51 16 8 C -0.12 -3.08 5.26 29.85 0.16 -2.92 16 9 C 0.53 18.63 7.85 87.66 0.69 19.31 16 10 O -0.59 -25.26 16.24 -3.03 -0.05 -25.30 16 11 N -0.61 -22.85 3.33 -811.78 -2.70 -25.55 16 12 C 0.10 3.33 6.49 86.73 0.56 3.89 16 13 C -0.13 -5.18 5.38 31.78 0.17 -5.01 16 14 C 0.23 11.08 0.88 -10.15 -0.01 11.07 16 15 O -0.59 -30.07 13.18 -148.98 -1.96 -32.04 16 16 C -0.56 -29.20 8.27 25.60 0.21 -28.99 16 17 H 0.05 2.84 7.79 -2.91 -0.02 2.82 16 18 C 0.04 1.92 5.27 84.66 0.45 2.36 16 19 N -0.90 -45.35 10.73 21.45 0.23 -45.12 16 20 Si 0.96 40.60 29.54 68.60 2.03 42.63 16 21 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 22 H -0.28 -11.46 7.11 99.48 0.71 -10.76 16 23 H -0.28 -11.99 7.11 99.48 0.71 -11.28 16 24 C 0.13 5.58 6.08 86.86 0.53 6.10 16 25 C -0.16 -3.43 9.64 22.37 0.22 -3.21 16 26 C -0.06 -0.96 5.88 -19.88 -0.12 -1.08 16 27 C -0.12 -1.20 9.60 71.24 0.68 -0.51 16 28 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 29 H 0.08 0.63 5.94 -2.39 -0.01 0.62 16 30 H 0.07 0.65 8.08 -2.39 -0.02 0.63 16 31 H 0.14 2.18 8.06 -2.91 -0.02 2.15 16 32 H 0.12 3.02 6.30 -2.91 -0.02 3.00 16 33 H 0.07 1.77 7.62 -2.39 -0.02 1.76 16 34 H 0.06 1.70 7.62 -2.39 -0.02 1.68 16 35 H 0.12 2.70 8.14 -2.38 -0.02 2.68 16 36 H 0.13 2.62 8.14 -2.39 -0.02 2.60 16 37 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 38 H 0.09 2.38 8.14 -2.39 -0.02 2.36 16 39 H 0.08 3.29 7.54 -2.39 -0.02 3.27 16 40 H 0.06 2.62 8.03 -2.39 -0.02 2.60 16 41 H 0.38 19.15 7.51 -74.05 -0.56 18.59 16 42 H 0.27 13.01 8.31 -92.70 -0.77 12.24 16 43 H 0.07 3.22 8.03 -2.38 -0.02 3.20 16 44 H 0.05 2.26 8.04 -2.38 -0.02 2.24 16 45 H 0.14 2.54 8.06 -2.91 -0.02 2.51 16 46 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 47 H 0.07 0.68 8.09 -2.38 -0.02 0.66 16 48 H 0.09 0.64 5.94 -2.39 -0.01 0.63 16 Total: -1.00 -62.58 389.80 1.98 -60.60 By element: Atomic # 1 Polarization: 36.89 SS G_CDS: 0.41 Total: 37.30 kcal Atomic # 6 Polarization: -8.16 SS G_CDS: 4.96 Total: -3.19 kcal Atomic # 7 Polarization: -68.21 SS G_CDS: -2.47 Total: -70.68 kcal Atomic # 8 Polarization: -63.71 SS G_CDS: -2.95 Total: -66.66 kcal Atomic # 14 Polarization: 40.60 SS G_CDS: 2.03 Total: 42.63 kcal Total: -62.58 1.98 -60.60 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592837509.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.469 kcal (2) G-P(sol) polarization free energy of solvation -62.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.595 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds