Wall clock time and date at job start Tue Mar 31 2020 18:36:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53002 * 109.47024 * 2 1 4 4 C 1.50695 * 109.47087 * 120.00325 * 2 1 3 5 5 C 1.38294 * 119.97352 * 300.01799 * 4 2 1 6 6 C 1.38243 * 120.11249 * 180.02562 * 5 4 2 7 7 C 1.38172 * 120.05370 * 359.67385 * 6 5 4 8 8 C 1.38709 * 119.94177 * 0.58363 * 7 6 5 9 9 O 1.35906 * 120.04958 * 179.72075 * 8 7 6 10 10 C 1.42894 * 117.00421 * 359.71997 * 9 8 7 11 11 C 1.50699 * 109.47221 * 180.02562 * 10 9 8 12 12 O 1.21276 * 120.00059 * 0.02562 * 11 10 9 13 13 N 1.34780 * 120.00023 * 179.97438 * 11 10 9 14 14 C 1.47423 * 125.64763 * 359.97438 * 13 11 10 15 15 C 1.54907 * 104.83356 * 155.89026 * 14 13 11 16 16 C 1.55166 * 101.57953 * 37.00779 * 15 14 13 17 17 O 1.42896 * 110.86794 * 82.93358 * 16 15 14 18 18 C 1.50697 * 110.71994 * 206.13409 * 16 15 14 19 19 H 1.08004 * 120.00225 * 351.63703 * 18 16 15 20 20 C 1.37876 * 119.99833 * 171.63731 * 18 16 15 21 21 N 1.31517 * 120.00149 * 5.94431 * 20 18 16 22 22 Si 1.86797 * 120.00065 * 185.94662 * 20 18 16 23 23 H 1.48500 * 109.47412 * 94.98569 * 22 20 18 24 24 H 1.48498 * 109.47414 * 214.98557 * 22 20 18 25 25 H 1.48504 * 109.47339 * 334.98615 * 22 20 18 26 26 C 1.47018 * 125.64592 * 180.02562 * 13 11 10 27 27 C 1.38120 * 119.97409 * 120.00063 * 4 2 1 28 28 H 1.09001 * 109.46523 * 300.00169 * 1 2 3 29 29 H 1.08996 * 109.47247 * 59.99222 * 1 2 3 30 30 H 1.08997 * 109.47176 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.46504 * 240.00348 * 2 1 3 32 32 H 1.08999 * 109.46893 * 60.00323 * 3 2 1 33 33 H 1.09005 * 109.46930 * 179.97438 * 3 2 1 34 34 H 1.08996 * 109.47205 * 299.99930 * 3 2 1 35 35 H 1.07996 * 119.93955 * 359.97438 * 5 4 2 36 36 H 1.07998 * 119.97297 * 179.97438 * 6 5 4 37 37 H 1.08000 * 120.02632 * 180.29618 * 7 6 5 38 38 H 1.08999 * 109.47040 * 60.00277 * 10 9 8 39 39 H 1.09000 * 109.47049 * 300.00691 * 10 9 8 40 40 H 1.08999 * 110.36866 * 274.72877 * 14 13 11 41 41 H 1.09000 * 110.36595 * 37.05128 * 14 13 11 42 42 H 1.08997 * 111.00600 * 155.08011 * 15 14 13 43 43 H 1.09002 * 111.00328 * 278.94016 * 15 14 13 44 44 H 0.96703 * 114.00093 * 184.93875 * 17 16 15 45 45 H 0.97001 * 119.99766 * 180.02562 * 21 20 18 46 46 H 1.08999 * 109.88589 * 300.45456 * 26 13 11 47 47 H 1.09000 * 109.88108 * 61.62602 * 26 13 11 48 48 H 1.08007 * 120.02736 * 0.02562 * 27 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7105 1.2304 5 6 1.6976 -0.2378 2.4862 6 6 2.1573 -0.8870 3.6168 7 6 2.9471 -2.0141 3.4946 8 6 3.2886 -2.4871 2.2362 9 8 4.0700 -3.5922 2.1135 10 6 4.5095 -4.2137 3.3229 11 6 5.3587 -5.4137 2.9912 12 8 5.5674 -5.7074 1.8333 13 7 5.8870 -6.1598 3.9816 14 6 5.7159 -5.9165 5.4255 15 6 5.9436 -7.2971 6.0900 16 6 7.0756 -7.8851 5.2066 17 8 8.3531 -7.4047 5.6299 18 6 7.0407 -9.3915 5.2280 19 1 6.3819 -9.9068 5.9112 20 6 7.8500 -10.1119 4.3753 21 7 8.7353 -9.4905 3.6271 22 14 7.6889 -11.9706 4.2826 23 1 6.7854 -12.3339 3.1614 24 1 9.0271 -12.5728 4.0548 25 1 7.1261 -12.4830 5.5577 26 6 6.7303 -7.3504 3.8007 27 6 2.8264 -1.8334 1.1030 28 1 -0.3632 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 3.1301 1.4425 0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.0767 0.6405 2.5837 36 1 1.8948 -0.5157 4.5964 37 1 3.3020 -2.5237 4.3782 38 1 3.6434 -4.5305 3.9040 39 1 5.0967 -3.5028 3.9041 40 1 6.4556 -5.1985 5.7795 41 1 4.7078 -5.5573 5.6328 42 1 6.2728 -7.1841 7.1229 43 1 5.0448 -7.9112 6.0329 44 1 9.0856 -7.6832 5.0633 45 1 9.3043 -9.9974 3.0270 46 1 6.1850 -8.1092 3.2394 47 1 7.6443 -7.0804 3.2718 48 1 3.0877 -2.2021 0.1220 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592837690.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:36:19 Heat of formation + Delta-G solvation = -105.663684 kcal Electronic energy + Delta-G solvation = -28234.810346 eV Core-core repulsion = 24254.626513 eV Total energy + Delta-G solvation = -3980.183833 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.50011 -39.44737 -38.16826 -37.05455 -35.11083 -34.36384 -32.29129 -31.14171 -30.32258 -29.50637 -28.59620 -27.45051 -27.44339 -24.96944 -23.43191 -22.77180 -22.56990 -20.36157 -19.70360 -18.91558 -17.94268 -17.20216 -16.73927 -16.35240 -16.29075 -15.72248 -15.44664 -15.16060 -14.71615 -14.64461 -14.31516 -13.94979 -13.79434 -13.73699 -13.25086 -13.07596 -12.95441 -12.94556 -12.64320 -12.36312 -12.28664 -12.04087 -11.74650 -11.59621 -11.53379 -11.43702 -11.10539 -11.06721 -11.01527 -10.89101 -10.82270 -10.74110 -10.51872 -10.23222 -9.43954 -9.37618 -8.99276 -8.71387 -8.36774 -8.30494 -8.01750 -6.33199 -4.41210 1.14736 1.30832 2.69694 2.95428 3.19213 3.27434 3.29462 3.58792 3.79631 4.24174 4.40594 4.53513 4.63064 4.76671 4.89324 4.89539 4.95167 4.99056 5.04456 5.05192 5.16947 5.27537 5.31427 5.32551 5.37531 5.51487 5.60005 5.62036 5.69175 5.71322 5.86258 5.91060 5.91711 5.93364 6.03641 6.17099 6.27106 6.41252 6.43051 6.60129 6.66607 6.77323 6.85344 7.18337 7.27169 7.34771 7.68504 7.95371 8.06162 8.56275 8.63549 9.23311 9.34633 10.74890 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.026603 B = 0.002105 C = 0.002036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1052.279549 B =13296.203597 C =13746.002905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.058 4.058 3 C -0.143 4.143 4 C -0.039 4.039 5 C -0.157 4.157 6 C -0.077 4.077 7 C -0.217 4.217 8 C 0.137 3.863 9 O -0.288 6.288 10 C 0.047 3.953 11 C 0.521 3.479 12 O -0.528 6.528 13 N -0.609 5.609 14 C 0.096 3.904 15 C -0.117 4.117 16 C 0.248 3.752 17 O -0.585 6.585 18 C -0.540 4.540 19 H 0.067 0.933 20 C 0.071 3.929 21 N -0.892 5.892 22 Si 0.903 3.097 23 H -0.278 1.278 24 H -0.284 1.284 25 H -0.272 1.272 26 C 0.106 3.894 27 C -0.149 4.149 28 H 0.057 0.943 29 H 0.058 0.942 30 H 0.057 0.943 31 H 0.080 0.920 32 H 0.057 0.943 33 H 0.057 0.943 34 H 0.058 0.942 35 H 0.121 0.879 36 H 0.124 0.876 37 H 0.128 0.872 38 H 0.089 0.911 39 H 0.089 0.911 40 H 0.068 0.932 41 H 0.062 0.938 42 H 0.078 0.922 43 H 0.078 0.922 44 H 0.383 0.617 45 H 0.271 0.729 46 H 0.068 0.932 47 H 0.067 0.933 48 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.921 19.019 -0.893 23.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.077 4.077 3 C -0.201 4.201 4 C -0.039 4.039 5 C -0.175 4.175 6 C -0.095 4.095 7 C -0.235 4.235 8 C 0.091 3.909 9 O -0.200 6.200 10 C -0.031 4.031 11 C 0.307 3.693 12 O -0.405 6.405 13 N -0.344 5.344 14 C -0.027 4.027 15 C -0.155 4.155 16 C 0.207 3.793 17 O -0.394 6.394 18 C -0.578 4.578 19 H 0.086 0.914 20 C -0.133 4.133 21 N -0.530 5.530 22 Si 0.730 3.270 23 H -0.204 1.204 24 H -0.210 1.210 25 H -0.196 1.196 26 C -0.015 4.015 27 C -0.167 4.167 28 H 0.076 0.924 29 H 0.077 0.923 30 H 0.076 0.924 31 H 0.098 0.902 32 H 0.076 0.924 33 H 0.076 0.924 34 H 0.077 0.923 35 H 0.139 0.861 36 H 0.142 0.858 37 H 0.146 0.854 38 H 0.107 0.893 39 H 0.107 0.893 40 H 0.087 0.913 41 H 0.080 0.920 42 H 0.097 0.903 43 H 0.097 0.903 44 H 0.233 0.767 45 H 0.081 0.919 46 H 0.087 0.913 47 H 0.086 0.914 48 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -13.972 19.035 -1.425 23.655 hybrid contribution 0.342 -1.275 -0.238 1.342 sum -13.631 17.759 -1.663 22.449 Atomic orbital electron populations 1.21851 0.94131 1.02186 1.01902 1.20155 0.96072 0.96099 0.95358 1.21851 1.01419 0.94900 1.01901 1.19619 0.95416 0.93934 0.94916 1.20831 1.03367 1.01569 0.91781 1.20897 0.95755 0.94215 0.98630 1.21284 1.05237 1.00737 0.96270 1.19085 0.91004 0.86780 0.94025 1.86175 1.63512 1.38925 1.31433 1.22519 0.99080 0.94808 0.86743 1.19485 0.81014 0.83524 0.85277 1.90725 1.60138 1.70522 1.19074 1.48714 1.50433 1.29447 1.05805 1.22420 0.99867 0.99640 0.80749 1.22748 0.99471 0.93645 0.99599 1.19518 0.81310 0.91863 0.86585 1.86102 1.17943 1.77784 1.57608 1.21481 1.24338 0.90381 1.21574 0.91440 1.25083 0.94156 0.99562 0.94499 1.69696 1.21089 1.36619 1.25620 0.86391 0.77677 0.84294 0.78590 1.20411 1.20977 1.19642 1.23049 0.93234 0.83612 1.01621 1.20336 1.01914 0.97008 0.97473 0.92407 0.92325 0.92396 0.90192 0.92406 0.92393 0.92323 0.86134 0.85825 0.85434 0.89303 0.89289 0.91347 0.91989 0.90337 0.90292 0.76650 0.91936 0.91313 0.91422 0.85138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.97 9.01 37.16 0.33 -0.63 16 2 C -0.06 -0.46 3.09 -91.77 -0.28 -0.74 16 3 C -0.14 -0.97 9.01 37.16 0.33 -0.63 16 4 C -0.04 -0.39 4.78 -104.65 -0.50 -0.89 16 5 C -0.16 -1.45 8.71 -39.56 -0.34 -1.80 16 6 C -0.08 -0.73 10.04 -39.60 -0.40 -1.13 16 7 C -0.22 -2.41 9.04 -39.43 -0.36 -2.77 16 8 C 0.14 1.85 6.69 -39.22 -0.26 1.59 16 9 O -0.29 -4.70 9.67 -39.36 -0.38 -5.08 16 10 C 0.05 0.69 4.23 36.01 0.15 0.84 16 11 C 0.52 10.28 7.93 -10.98 -0.09 10.20 16 12 O -0.53 -12.78 16.83 -14.35 -0.24 -13.02 16 13 N -0.61 -12.08 3.33 -170.52 -0.57 -12.64 16 14 C 0.10 1.56 6.68 -2.53 -0.02 1.54 16 15 C -0.12 -2.19 6.23 -24.58 -0.15 -2.34 16 16 C 0.25 5.79 0.85 -89.93 -0.08 5.71 16 17 O -0.59 -14.25 13.09 -35.23 -0.46 -14.71 16 18 C -0.54 -13.79 8.14 -34.44 -0.28 -14.07 16 19 H 0.07 1.70 7.79 -52.48 -0.41 1.29 16 20 C 0.07 1.82 5.22 -17.82 -0.09 1.73 16 21 N -0.89 -23.50 11.01 55.43 0.61 -22.89 16 22 Si 0.90 20.27 29.54 -169.99 -5.02 15.25 16 23 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 24 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 25 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 26 C 0.11 2.51 5.19 -3.06 -0.02 2.49 16 27 C -0.15 -1.83 9.61 -39.44 -0.38 -2.21 16 28 H 0.06 0.36 7.38 -51.93 -0.38 -0.02 16 29 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 31 H 0.08 0.63 7.87 -51.93 -0.41 0.22 16 32 H 0.06 0.36 7.39 -51.93 -0.38 -0.02 16 33 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 34 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 35 H 0.12 0.87 7.09 -52.49 -0.37 0.50 16 36 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 37 H 0.13 1.21 6.30 -52.49 -0.33 0.88 16 38 H 0.09 1.06 7.36 -51.93 -0.38 0.68 16 39 H 0.09 1.08 7.67 -51.93 -0.40 0.68 16 40 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 41 H 0.06 0.77 7.48 -51.93 -0.39 0.38 16 42 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 43 H 0.08 1.42 8.04 -51.93 -0.42 1.00 16 44 H 0.38 9.60 7.51 45.56 0.34 9.94 16 45 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16 46 H 0.07 1.79 7.79 -51.93 -0.40 1.38 16 47 H 0.07 1.76 7.92 -51.93 -0.41 1.35 16 48 H 0.13 1.57 7.94 -52.48 -0.42 1.15 16 LS Contribution 389.98 15.07 5.88 5.88 Total: -1.00 -30.52 389.98 -9.47 -39.99 By element: Atomic # 1 Polarization: 17.20 SS G_CDS: -6.86 Total: 10.34 kcal Atomic # 6 Polarization: -0.69 SS G_CDS: -2.43 Total: -3.11 kcal Atomic # 7 Polarization: -35.58 SS G_CDS: 0.04 Total: -35.53 kcal Atomic # 8 Polarization: -31.72 SS G_CDS: -1.08 Total: -32.81 kcal Atomic # 14 Polarization: 20.27 SS G_CDS: -5.02 Total: 15.25 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -30.52 -9.47 -39.99 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592837690.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.677 kcal (2) G-P(sol) polarization free energy of solvation -30.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.987 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds