Wall clock time and date at job start Tue Mar 31 2020 18:36:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53002 * 109.47024 * 2 1 4 4 C 1.50695 * 109.47087 * 120.00325 * 2 1 3 5 5 C 1.38294 * 119.97352 * 300.01799 * 4 2 1 6 6 C 1.38243 * 120.11249 * 180.02562 * 5 4 2 7 7 C 1.38172 * 120.05370 * 359.67385 * 6 5 4 8 8 C 1.38709 * 119.94177 * 0.58363 * 7 6 5 9 9 O 1.35906 * 120.04958 * 179.72075 * 8 7 6 10 10 C 1.42894 * 117.00421 * 359.71997 * 9 8 7 11 11 C 1.50699 * 109.47221 * 180.02562 * 10 9 8 12 12 O 1.21276 * 120.00059 * 0.02562 * 11 10 9 13 13 N 1.34780 * 120.00023 * 179.97438 * 11 10 9 14 14 C 1.47423 * 125.64763 * 359.97438 * 13 11 10 15 15 C 1.54907 * 104.83356 * 155.89026 * 14 13 11 16 16 C 1.55166 * 101.57953 * 37.00779 * 15 14 13 17 17 O 1.42896 * 110.86794 * 82.93358 * 16 15 14 18 18 C 1.50697 * 110.71994 * 206.13409 * 16 15 14 19 19 H 1.08004 * 120.00225 * 351.63703 * 18 16 15 20 20 C 1.37876 * 119.99833 * 171.63731 * 18 16 15 21 21 N 1.31517 * 120.00149 * 5.94431 * 20 18 16 22 22 Si 1.86797 * 120.00065 * 185.94662 * 20 18 16 23 23 H 1.48500 * 109.47412 * 94.98569 * 22 20 18 24 24 H 1.48498 * 109.47414 * 214.98557 * 22 20 18 25 25 H 1.48504 * 109.47339 * 334.98615 * 22 20 18 26 26 C 1.47018 * 125.64592 * 180.02562 * 13 11 10 27 27 C 1.38120 * 119.97409 * 120.00063 * 4 2 1 28 28 H 1.09001 * 109.46523 * 300.00169 * 1 2 3 29 29 H 1.08996 * 109.47247 * 59.99222 * 1 2 3 30 30 H 1.08997 * 109.47176 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.46504 * 240.00348 * 2 1 3 32 32 H 1.08999 * 109.46893 * 60.00323 * 3 2 1 33 33 H 1.09005 * 109.46930 * 179.97438 * 3 2 1 34 34 H 1.08996 * 109.47205 * 299.99930 * 3 2 1 35 35 H 1.07996 * 119.93955 * 359.97438 * 5 4 2 36 36 H 1.07998 * 119.97297 * 179.97438 * 6 5 4 37 37 H 1.08000 * 120.02632 * 180.29618 * 7 6 5 38 38 H 1.08999 * 109.47040 * 60.00277 * 10 9 8 39 39 H 1.09000 * 109.47049 * 300.00691 * 10 9 8 40 40 H 1.08999 * 110.36866 * 274.72877 * 14 13 11 41 41 H 1.09000 * 110.36595 * 37.05128 * 14 13 11 42 42 H 1.08997 * 111.00600 * 155.08011 * 15 14 13 43 43 H 1.09002 * 111.00328 * 278.94016 * 15 14 13 44 44 H 0.96703 * 114.00093 * 184.93875 * 17 16 15 45 45 H 0.97001 * 119.99766 * 180.02562 * 21 20 18 46 46 H 1.08999 * 109.88589 * 300.45456 * 26 13 11 47 47 H 1.09000 * 109.88108 * 61.62602 * 26 13 11 48 48 H 1.08007 * 120.02736 * 0.02562 * 27 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7105 1.2304 5 6 1.6976 -0.2378 2.4862 6 6 2.1573 -0.8870 3.6168 7 6 2.9471 -2.0141 3.4946 8 6 3.2886 -2.4871 2.2362 9 8 4.0700 -3.5922 2.1135 10 6 4.5095 -4.2137 3.3229 11 6 5.3587 -5.4137 2.9912 12 8 5.5674 -5.7074 1.8333 13 7 5.8870 -6.1598 3.9816 14 6 5.7159 -5.9165 5.4255 15 6 5.9436 -7.2971 6.0900 16 6 7.0756 -7.8851 5.2066 17 8 8.3531 -7.4047 5.6299 18 6 7.0407 -9.3915 5.2280 19 1 6.3819 -9.9068 5.9112 20 6 7.8500 -10.1119 4.3753 21 7 8.7353 -9.4905 3.6271 22 14 7.6889 -11.9706 4.2826 23 1 6.7854 -12.3339 3.1614 24 1 9.0271 -12.5728 4.0548 25 1 7.1261 -12.4830 5.5577 26 6 6.7303 -7.3504 3.8007 27 6 2.8264 -1.8334 1.1030 28 1 -0.3632 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 3.1301 1.4425 0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.0767 0.6405 2.5837 36 1 1.8948 -0.5157 4.5964 37 1 3.3020 -2.5237 4.3782 38 1 3.6434 -4.5305 3.9040 39 1 5.0967 -3.5028 3.9041 40 1 6.4556 -5.1985 5.7795 41 1 4.7078 -5.5573 5.6328 42 1 6.2728 -7.1841 7.1229 43 1 5.0448 -7.9112 6.0329 44 1 9.0856 -7.6832 5.0633 45 1 9.3043 -9.9974 3.0270 46 1 6.1850 -8.1092 3.2394 47 1 7.6443 -7.0804 3.2718 48 1 3.0877 -2.2021 0.1220 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592837690.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:36:18 Heat of formation + Delta-G solvation = -124.321099 kcal Electronic energy + Delta-G solvation = -28235.619392 eV Core-core repulsion = 24254.626513 eV Total energy + Delta-G solvation = -3980.992880 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.57966 -40.80842 -39.33396 -38.56421 -36.13573 -35.80517 -34.27071 -32.27594 -31.66120 -30.38828 -29.93590 -28.98937 -27.95732 -26.73562 -24.51860 -23.82819 -23.55534 -21.55232 -21.11938 -20.32513 -19.16346 -18.83561 -18.04961 -17.60715 -17.37200 -17.05271 -16.79278 -16.36193 -16.10083 -15.88938 -15.72747 -14.87382 -14.80584 -14.79384 -14.65905 -14.44874 -14.33929 -14.02810 -13.71706 -13.52109 -13.37735 -13.24472 -12.95260 -12.91098 -12.89287 -12.55502 -12.37063 -12.35594 -12.27774 -12.21451 -12.07661 -11.83876 -11.68279 -11.50724 -11.19170 -11.03920 -10.65997 -10.29660 -9.77104 -9.68108 -9.16793 -8.29795 -6.44397 0.37420 0.48586 1.37698 1.41479 1.43687 1.46587 1.51129 2.34885 2.54151 2.80266 2.97820 3.34370 3.73894 3.77241 3.83748 3.92978 3.99752 4.04285 4.08028 4.18988 4.24590 4.32895 4.37685 4.38914 4.44724 4.60490 4.61115 4.66714 4.67771 4.84275 4.99085 5.01385 5.01730 5.05749 5.10966 5.19417 5.21800 5.31010 5.33939 5.36740 5.41241 5.49315 5.53304 5.68930 5.71894 5.86073 6.04158 6.36440 6.52436 6.64419 7.02438 7.24179 7.33958 8.76440 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.026603 B = 0.002105 C = 0.002036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1052.279549 B =13296.203597 C =13746.002905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.061 4.061 3 C -0.140 4.140 4 C -0.040 4.040 5 C -0.154 4.154 6 C -0.075 4.075 7 C -0.219 4.219 8 C 0.108 3.892 9 O -0.325 6.325 10 C 0.060 3.940 11 C 0.513 3.487 12 O -0.588 6.588 13 N -0.611 5.611 14 C 0.099 3.901 15 C -0.112 4.112 16 C 0.231 3.769 17 O -0.587 6.587 18 C -0.557 4.557 19 H 0.069 0.931 20 C 0.024 3.976 21 N -0.915 5.915 22 Si 0.961 3.039 23 H -0.282 1.282 24 H -0.282 1.282 25 H -0.262 1.262 26 C 0.122 3.878 27 C -0.174 4.174 28 H 0.067 0.933 29 H 0.070 0.930 30 H 0.046 0.954 31 H 0.071 0.929 32 H 0.067 0.933 33 H 0.046 0.954 34 H 0.070 0.930 35 H 0.147 0.853 36 H 0.156 0.844 37 H 0.149 0.851 38 H 0.125 0.875 39 H 0.121 0.879 40 H 0.082 0.918 41 H 0.116 0.884 42 H 0.094 0.906 43 H 0.086 0.914 44 H 0.375 0.625 45 H 0.269 0.731 46 H 0.032 0.968 47 H 0.030 0.970 48 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.407 21.272 1.544 26.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.079 4.079 3 C -0.197 4.197 4 C -0.040 4.040 5 C -0.172 4.172 6 C -0.093 4.093 7 C -0.237 4.237 8 C 0.063 3.937 9 O -0.239 6.239 10 C -0.018 4.018 11 C 0.302 3.698 12 O -0.468 6.468 13 N -0.345 5.345 14 C -0.022 4.022 15 C -0.150 4.150 16 C 0.191 3.809 17 O -0.394 6.394 18 C -0.595 4.595 19 H 0.087 0.913 20 C -0.177 4.177 21 N -0.554 5.554 22 Si 0.786 3.214 23 H -0.208 1.208 24 H -0.208 1.208 25 H -0.186 1.186 26 C -0.001 4.001 27 C -0.193 4.193 28 H 0.086 0.914 29 H 0.089 0.911 30 H 0.066 0.934 31 H 0.089 0.911 32 H 0.086 0.914 33 H 0.065 0.935 34 H 0.089 0.911 35 H 0.164 0.836 36 H 0.174 0.826 37 H 0.166 0.834 38 H 0.142 0.858 39 H 0.139 0.861 40 H 0.100 0.900 41 H 0.134 0.866 42 H 0.112 0.888 43 H 0.104 0.896 44 H 0.224 0.776 45 H 0.078 0.922 46 H 0.051 0.949 47 H 0.049 0.951 48 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -16.483 21.315 1.062 26.965 hybrid contribution 1.085 -1.913 -1.035 2.431 sum -15.398 19.402 0.027 24.769 Atomic orbital electron populations 1.21832 0.92978 1.01866 1.03052 1.20215 0.96960 0.96553 0.94193 1.21833 1.00732 0.94120 1.03054 1.19874 0.94590 0.93113 0.96422 1.21198 1.02805 1.01996 0.91226 1.21313 0.94513 0.93284 1.00144 1.21543 1.05205 1.01294 0.95696 1.19335 0.92081 0.86725 0.95519 1.86111 1.64756 1.40426 1.32569 1.22489 0.99678 0.92870 0.86736 1.20537 0.80586 0.84444 0.84260 1.90690 1.62254 1.72260 1.21624 1.48751 1.49599 1.28237 1.07877 1.22677 1.03519 0.98426 0.77624 1.22758 0.97578 0.94924 0.99707 1.19751 0.82176 0.91376 0.87581 1.86091 1.18198 1.77755 1.57399 1.21849 1.24165 0.91973 1.21486 0.91276 1.25830 0.94059 1.03441 0.94363 1.69806 1.21692 1.37799 1.26087 0.85492 0.77457 0.79816 0.78604 1.20775 1.20808 1.18622 1.22532 0.91852 0.84518 1.01224 1.20479 1.03404 0.98384 0.96991 0.91381 0.91066 0.93442 0.91060 0.91381 0.93468 0.91058 0.83569 0.82634 0.83375 0.85769 0.86133 0.89977 0.86594 0.88752 0.89555 0.77596 0.92161 0.94943 0.95114 0.86626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.62 9.01 71.98 0.65 -0.97 16 2 C -0.06 -0.89 3.09 -11.54 -0.04 -0.92 16 3 C -0.14 -1.63 9.01 71.98 0.65 -0.98 16 4 C -0.04 -0.75 4.78 -19.88 -0.10 -0.85 16 5 C -0.15 -2.36 8.71 22.28 0.19 -2.17 16 6 C -0.07 -1.13 10.04 22.26 0.22 -0.90 16 7 C -0.22 -4.20 9.04 22.37 0.20 -4.00 16 8 C 0.11 2.84 6.69 22.50 0.15 2.99 16 9 O -0.33 -10.58 9.67 -73.46 -0.71 -11.30 16 10 C 0.06 1.62 4.23 71.24 0.30 1.92 16 11 C 0.51 20.32 7.93 87.66 0.69 21.01 16 12 O -0.59 -29.94 16.83 16.02 0.27 -29.67 16 13 N -0.61 -23.99 3.33 -811.81 -2.70 -26.69 16 14 C 0.10 2.86 6.68 86.85 0.58 3.45 16 15 C -0.11 -3.95 6.23 31.99 0.20 -3.75 16 16 C 0.23 10.91 0.85 -10.35 -0.01 10.90 16 17 O -0.59 -28.91 13.09 -148.98 -1.95 -30.86 16 18 C -0.56 -28.80 8.14 25.60 0.21 -28.59 16 19 H 0.07 3.46 7.79 -2.91 -0.02 3.44 16 20 C 0.02 1.27 5.22 84.65 0.44 1.71 16 21 N -0.91 -50.13 11.01 21.45 0.24 -49.89 16 22 Si 0.96 42.21 29.54 68.60 2.03 44.24 16 23 H -0.28 -12.44 7.11 99.48 0.71 -11.74 16 24 H -0.28 -12.24 7.11 99.48 0.71 -11.54 16 25 H -0.26 -11.02 7.11 99.48 0.71 -10.31 16 26 C 0.12 6.01 5.19 86.73 0.45 6.46 16 27 C -0.17 -4.35 9.61 22.36 0.21 -4.14 16 28 H 0.07 0.65 7.38 -2.39 -0.02 0.63 16 29 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 30 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 31 H 0.07 1.14 7.87 -2.39 -0.02 1.12 16 32 H 0.07 0.65 7.39 -2.39 -0.02 0.63 16 33 H 0.05 0.65 8.14 -2.38 -0.02 0.63 16 34 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 35 H 0.15 1.47 7.09 -2.91 -0.02 1.44 16 36 H 0.16 1.34 8.06 -2.91 -0.02 1.32 16 37 H 0.15 2.11 6.30 -2.91 -0.02 2.09 16 38 H 0.12 2.46 7.36 -2.39 -0.02 2.44 16 39 H 0.12 2.49 7.67 -2.39 -0.02 2.47 16 40 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 41 H 0.12 2.19 7.48 -2.39 -0.02 2.18 16 42 H 0.09 3.03 8.14 -2.39 -0.02 3.02 16 43 H 0.09 2.90 8.04 -2.39 -0.02 2.88 16 44 H 0.37 19.54 7.51 -74.06 -0.56 18.98 16 45 H 0.27 14.20 8.31 -92.71 -0.77 13.43 16 46 H 0.03 1.79 7.79 -2.39 -0.02 1.77 16 47 H 0.03 1.70 7.92 -2.39 -0.02 1.68 16 48 H 0.12 3.06 7.94 -2.91 -0.02 3.04 16 Total: -1.00 -71.89 389.98 2.60 -69.29 By element: Atomic # 1 Polarization: 33.29 SS G_CDS: 0.41 Total: 33.70 kcal Atomic # 6 Polarization: -3.84 SS G_CDS: 5.02 Total: 1.18 kcal Atomic # 7 Polarization: -74.12 SS G_CDS: -2.46 Total: -76.59 kcal Atomic # 8 Polarization: -69.44 SS G_CDS: -2.39 Total: -71.83 kcal Atomic # 14 Polarization: 42.21 SS G_CDS: 2.03 Total: 44.24 kcal Total: -71.89 2.60 -69.29 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592837690.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.027 kcal (2) G-P(sol) polarization free energy of solvation -71.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.294 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds