Wall clock time and date at job start Tue Mar 31 2020 18:36:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53011 * 1 3 3 C 1.53004 * 109.46898 * 2 1 4 4 C 1.50694 * 109.47310 * 119.99941 * 2 1 3 5 5 C 1.38171 * 120.03007 * 300.32444 * 4 2 1 6 6 C 1.38241 * 120.05374 * 180.30017 * 5 4 2 7 7 C 1.38290 * 120.11530 * 359.66891 * 6 5 4 8 8 C 1.38118 * 120.05290 * 0.02562 * 7 6 5 9 9 C 1.38716 * 120.02815 * 119.99622 * 4 2 1 10 10 O 1.35897 * 120.05218 * 0.02562 * 9 4 2 11 11 C 1.42905 * 116.99714 * 179.72308 * 10 9 4 12 12 C 1.50705 * 109.46963 * 179.97438 * 11 10 9 13 13 O 1.21276 * 120.00034 * 0.02562 * 12 11 10 14 14 N 1.34775 * 119.99931 * 179.97438 * 12 11 10 15 15 C 1.47426 * 125.64777 * 359.97438 * 14 12 11 16 16 C 1.54910 * 104.83209 * 155.89013 * 15 14 12 17 17 C 1.55154 * 101.58031 * 37.01037 * 16 15 14 18 18 O 1.42901 * 110.87391 * 82.93102 * 17 16 15 19 19 C 1.50703 * 110.71804 * 206.13347 * 17 16 15 20 20 H 1.07995 * 120.00146 * 354.97912 * 19 17 16 21 21 C 1.37877 * 119.99790 * 174.97658 * 19 17 16 22 22 N 1.31518 * 120.00025 * 359.97438 * 21 19 17 23 23 Si 1.86800 * 119.99872 * 180.02562 * 21 19 17 24 24 H 1.48499 * 109.47160 * 0.02562 * 23 21 19 25 25 H 1.48508 * 109.47271 * 119.99917 * 23 21 19 26 26 H 1.48499 * 109.47118 * 239.99676 * 23 21 19 27 27 C 1.47019 * 125.65013 * 179.97438 * 14 12 11 28 28 H 1.09000 * 109.46852 * 299.99564 * 1 2 3 29 29 H 1.08997 * 109.47021 * 59.99827 * 1 2 3 30 30 H 1.09002 * 109.46456 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46852 * 240.00436 * 2 1 3 32 32 H 1.09003 * 109.46868 * 59.99781 * 3 2 1 33 33 H 1.08999 * 109.46590 * 180.02562 * 3 2 1 34 34 H 1.08998 * 109.46697 * 300.00063 * 3 2 1 35 35 H 1.08000 * 119.97133 * 359.97438 * 5 4 2 36 36 H 1.08003 * 119.94080 * 179.69916 * 6 5 4 37 37 H 1.07992 * 119.97547 * 180.02562 * 7 6 5 38 38 H 1.07999 * 120.03129 * 179.97438 * 8 7 6 39 39 H 1.09002 * 109.47234 * 59.99569 * 11 10 9 40 40 H 1.08995 * 109.46760 * 299.99584 * 11 10 9 41 41 H 1.08998 * 110.36718 * 274.72906 * 15 14 12 42 42 H 1.09005 * 110.36600 * 37.05467 * 15 14 12 43 43 H 1.09002 * 111.00097 * 155.08840 * 16 15 14 44 44 H 1.08999 * 111.00452 * 278.93764 * 16 15 14 45 45 H 0.96694 * 114.00195 * 184.93309 * 18 17 16 46 46 H 0.97001 * 119.99663 * 180.02562 * 22 21 19 47 47 H 1.09001 * 109.88389 * 300.46361 * 27 14 12 48 48 H 1.09003 * 109.87977 * 61.62701 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4426 0.0000 4 6 2.0325 -0.7104 1.2304 5 6 1.6936 -0.2428 2.4856 6 6 2.1592 -0.8904 3.6147 7 6 2.9595 -2.0114 3.4912 8 6 3.2959 -2.4865 2.2387 9 6 2.8300 -1.8383 1.1038 10 8 3.1596 -2.3037 -0.1297 11 6 3.9890 -3.4662 -0.1841 12 6 4.2467 -3.8325 -1.6231 13 8 3.7677 -3.1637 -2.5142 14 7 5.0103 -4.9027 -1.9196 15 6 5.6529 -5.7977 -0.9400 16 6 5.8537 -7.1346 -1.6964 17 6 6.2118 -6.6356 -3.1212 18 8 7.5997 -6.3076 -3.2120 19 6 5.8407 -7.6664 -4.1560 20 1 5.4653 -8.6308 -3.8472 21 6 5.9803 -7.3782 -5.4971 22 7 6.4369 -6.2035 -5.8732 23 14 5.5197 -8.6556 -6.7798 24 1 5.0339 -9.8845 -6.1024 25 1 4.4468 -8.1155 -7.6533 26 1 6.7113 -8.9819 -7.6037 27 6 5.3404 -5.3711 -3.2735 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3632 -1.0277 0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.6766 1.9564 0.8900 33 1 3.1301 1.4425 -0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.0687 0.6325 2.5848 36 1 1.8972 -0.5204 4.5950 37 1 3.3217 -2.5158 4.3747 38 1 3.9212 -3.3618 2.1426 39 1 3.4875 -4.2941 0.3171 40 1 4.9363 -3.2601 0.3140 41 1 6.6144 -5.3904 -0.6277 42 1 5.0035 -5.9440 -0.0769 43 1 6.6745 -7.7078 -1.2653 44 1 4.9340 -7.7195 -1.7070 45 1 7.8577 -5.9201 -4.0595 46 1 6.5348 -6.0007 -6.8167 47 1 4.4262 -5.6136 -3.8151 48 1 5.8964 -4.6001 -3.8071 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592838351.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:36:36 Heat of formation + Delta-G solvation = -104.576759 kcal Electronic energy + Delta-G solvation = -28856.268944 eV Core-core repulsion = 24876.132243 eV Total energy + Delta-G solvation = -3980.136701 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.58846 -39.41802 -37.83159 -36.89335 -35.44536 -34.37693 -32.27648 -30.65334 -30.27260 -29.89125 -28.50494 -27.42078 -27.19859 -24.96691 -23.64997 -22.75883 -22.09830 -20.23914 -19.73783 -18.87202 -18.27360 -17.22739 -16.71934 -16.34741 -16.20271 -15.62185 -15.42590 -14.77421 -14.73574 -14.53244 -14.31399 -13.99967 -13.84583 -13.61384 -13.18021 -12.99220 -12.95682 -12.84697 -12.51119 -12.22964 -12.16045 -11.99332 -11.80177 -11.72275 -11.50875 -11.22237 -11.11088 -11.10865 -10.89044 -10.74182 -10.69006 -10.63776 -10.50137 -10.23517 -9.43082 -9.38152 -8.98844 -8.72827 -8.37755 -8.23844 -8.01028 -6.32925 -4.41717 1.17000 1.31082 2.71096 2.96053 3.18014 3.27104 3.30094 3.60928 3.81840 4.23904 4.49846 4.59859 4.72154 4.87762 4.89930 4.96488 5.02276 5.04875 5.11546 5.16027 5.23701 5.27759 5.40295 5.49789 5.53957 5.59994 5.71382 5.72239 5.74360 5.90310 5.91127 5.98338 6.04112 6.09544 6.18810 6.24065 6.36224 6.41059 6.49468 6.61877 6.67204 6.77936 6.86028 7.19109 7.26443 7.34468 7.68546 7.94718 8.06658 8.56555 8.63416 9.23540 9.32965 10.74943 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.019534 B = 0.002552 C = 0.002369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1433.036063 B =10969.508461 C =11814.261968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.058 4.058 3 C -0.140 4.140 4 C -0.103 4.103 5 C -0.079 4.079 6 C -0.160 4.160 7 C -0.085 4.085 8 C -0.209 4.209 9 C 0.134 3.866 10 O -0.285 6.285 11 C 0.046 3.954 12 C 0.521 3.479 13 O -0.528 6.528 14 N -0.609 5.609 15 C 0.096 3.904 16 C -0.117 4.117 17 C 0.248 3.752 18 O -0.585 6.585 19 C -0.538 4.538 20 H 0.067 0.933 21 C 0.070 3.930 22 N -0.893 5.893 23 Si 0.904 3.096 24 H -0.271 1.271 25 H -0.282 1.282 26 H -0.281 1.281 27 C 0.106 3.894 28 H 0.052 0.948 29 H 0.057 0.943 30 H 0.055 0.945 31 H 0.092 0.908 32 H 0.052 0.948 33 H 0.055 0.945 34 H 0.057 0.943 35 H 0.126 0.874 36 H 0.121 0.879 37 H 0.123 0.877 38 H 0.128 0.872 39 H 0.088 0.912 40 H 0.088 0.912 41 H 0.068 0.932 42 H 0.061 0.939 43 H 0.078 0.922 44 H 0.078 0.922 45 H 0.383 0.617 46 H 0.270 0.730 47 H 0.069 0.931 48 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.127 9.436 17.469 21.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.076 4.076 3 C -0.197 4.197 4 C -0.104 4.104 5 C -0.097 4.097 6 C -0.178 4.178 7 C -0.103 4.103 8 C -0.228 4.228 9 C 0.088 3.912 10 O -0.197 6.197 11 C -0.032 4.032 12 C 0.307 3.693 13 O -0.404 6.404 14 N -0.344 5.344 15 C -0.027 4.027 16 C -0.155 4.155 17 C 0.207 3.793 18 O -0.393 6.393 19 C -0.576 4.576 20 H 0.086 0.914 21 C -0.133 4.133 22 N -0.532 5.532 23 Si 0.731 3.269 24 H -0.196 1.196 25 H -0.207 1.207 26 H -0.207 1.207 27 C -0.015 4.015 28 H 0.071 0.929 29 H 0.076 0.924 30 H 0.074 0.926 31 H 0.110 0.890 32 H 0.071 0.929 33 H 0.074 0.926 34 H 0.076 0.924 35 H 0.144 0.856 36 H 0.139 0.861 37 H 0.141 0.859 38 H 0.146 0.854 39 H 0.106 0.894 40 H 0.106 0.894 41 H 0.086 0.914 42 H 0.080 0.920 43 H 0.097 0.903 44 H 0.097 0.903 45 H 0.233 0.767 46 H 0.080 0.920 47 H 0.087 0.913 48 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -7.436 9.808 17.236 21.180 hybrid contribution -0.042 -0.636 -1.063 1.239 sum -7.478 9.172 16.173 20.040 Atomic orbital electron populations 1.21831 0.94494 1.01918 1.01503 1.20030 0.95660 0.95804 0.96117 1.21828 1.01288 0.95121 1.01500 1.19245 1.00178 0.95218 0.95733 1.20811 0.98666 0.99250 0.91006 1.21007 1.00941 0.97426 0.98450 1.20901 0.96895 0.95930 0.96563 1.21276 1.05902 1.03065 0.92560 1.18933 0.94876 0.93550 0.83874 1.86156 1.65215 1.43094 1.25264 1.22524 0.95587 0.88084 0.97031 1.19476 0.79612 0.80713 0.89480 1.90723 1.50239 1.50874 1.48576 1.48722 1.48452 1.26622 1.10599 1.22417 0.96932 0.91682 0.91641 1.22749 1.01618 0.94627 0.96484 1.19507 0.79315 0.89404 0.91045 1.86100 1.26437 1.85026 1.41785 1.21522 1.44791 1.00675 0.90624 0.91431 1.25085 0.93743 0.95609 0.98892 1.69700 1.45255 1.20838 1.17402 0.86342 0.78267 0.81288 0.80982 1.19579 1.20749 1.20710 1.23072 1.00563 0.98135 0.79722 0.92862 0.92372 0.92613 0.88965 0.92860 0.92609 0.92377 0.85594 0.86110 0.85915 0.85413 0.89385 0.89365 0.91369 0.92019 0.90340 0.90324 0.76664 0.91987 0.91291 0.91429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.41 9.00 37.16 0.33 -1.08 16 2 C -0.06 -0.68 3.06 -91.77 -0.28 -0.96 16 3 C -0.14 -1.41 9.01 37.16 0.33 -1.08 16 4 C -0.10 -1.25 4.79 -104.47 -0.50 -1.75 16 5 C -0.08 -0.79 8.71 -39.60 -0.35 -1.13 16 6 C -0.16 -1.47 10.04 -39.56 -0.40 -1.86 16 7 C -0.08 -0.81 10.04 -39.61 -0.40 -1.21 16 8 C -0.21 -2.34 9.04 -39.43 -0.36 -2.69 16 9 C 0.13 1.79 6.66 -39.21 -0.26 1.53 16 10 O -0.29 -4.53 8.44 -39.32 -0.33 -4.86 16 11 C 0.05 0.67 4.23 36.01 0.15 0.82 16 12 C 0.52 10.16 7.93 -10.98 -0.09 10.07 16 13 O -0.53 -12.56 16.83 -14.35 -0.24 -12.80 16 14 N -0.61 -11.98 3.33 -170.52 -0.57 -12.55 16 15 C 0.10 1.55 6.68 -2.53 -0.02 1.53 16 16 C -0.12 -2.18 6.23 -24.58 -0.15 -2.34 16 17 C 0.25 5.77 0.85 -89.94 -0.08 5.70 16 18 O -0.58 -14.18 13.08 -35.23 -0.46 -14.64 16 19 C -0.54 -13.71 8.12 -34.44 -0.28 -13.99 16 20 H 0.07 1.70 7.78 -52.49 -0.41 1.29 16 21 C 0.07 1.80 5.28 -17.82 -0.09 1.71 16 22 N -0.89 -23.46 10.97 55.43 0.61 -22.86 16 23 Si 0.90 20.21 29.54 -169.99 -5.02 15.19 16 24 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 25 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 26 H -0.28 -6.27 7.11 56.52 0.40 -5.86 16 27 C 0.11 2.50 5.24 -3.07 -0.02 2.48 16 28 H 0.05 0.45 7.37 -51.93 -0.38 0.07 16 29 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.09 1.35 6.99 -51.93 -0.36 0.99 16 32 H 0.05 0.45 7.41 -51.93 -0.38 0.07 16 33 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.13 0.99 7.10 -52.49 -0.37 0.62 16 36 H 0.12 0.82 8.06 -52.48 -0.42 0.40 16 37 H 0.12 0.88 8.06 -52.49 -0.42 0.45 16 38 H 0.13 1.21 6.30 -52.49 -0.33 0.88 16 39 H 0.09 1.05 7.37 -51.93 -0.38 0.67 16 40 H 0.09 1.07 7.66 -51.93 -0.40 0.67 16 41 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 42 H 0.06 0.76 7.48 -51.93 -0.39 0.37 16 43 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 44 H 0.08 1.41 8.04 -51.93 -0.42 1.00 16 45 H 0.38 9.57 7.45 45.56 0.34 9.91 16 46 H 0.27 6.82 8.31 -40.82 -0.34 6.48 16 47 H 0.07 1.79 7.81 -51.93 -0.41 1.38 16 48 H 0.07 1.75 7.92 -51.93 -0.41 1.34 16 LS Contribution 388.36 15.07 5.85 5.85 Total: -1.00 -30.13 388.36 -9.43 -39.55 By element: Atomic # 1 Polarization: 18.19 SS G_CDS: -6.82 Total: 11.37 kcal Atomic # 6 Polarization: -1.81 SS G_CDS: -2.44 Total: -4.25 kcal Atomic # 7 Polarization: -35.44 SS G_CDS: 0.04 Total: -35.40 kcal Atomic # 8 Polarization: -31.27 SS G_CDS: -1.03 Total: -32.30 kcal Atomic # 14 Polarization: 20.21 SS G_CDS: -5.02 Total: 15.19 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -30.13 -9.43 -39.55 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592838351.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.024 kcal (2) G-P(sol) polarization free energy of solvation -30.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.553 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds