Wall clock time and date at job start Tue Mar 31 2020 18:36:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53011 * 1 3 3 C 1.53004 * 109.46898 * 2 1 4 4 C 1.50694 * 109.47310 * 119.99941 * 2 1 3 5 5 C 1.38171 * 120.03007 * 300.32444 * 4 2 1 6 6 C 1.38241 * 120.05374 * 180.30017 * 5 4 2 7 7 C 1.38290 * 120.11530 * 359.66891 * 6 5 4 8 8 C 1.38118 * 120.05290 * 0.02562 * 7 6 5 9 9 C 1.38716 * 120.02815 * 119.99622 * 4 2 1 10 10 O 1.35897 * 120.05218 * 0.02562 * 9 4 2 11 11 C 1.42905 * 116.99714 * 179.72308 * 10 9 4 12 12 C 1.50705 * 109.46963 * 179.97438 * 11 10 9 13 13 O 1.21276 * 120.00034 * 0.02562 * 12 11 10 14 14 N 1.34775 * 119.99931 * 179.97438 * 12 11 10 15 15 C 1.47426 * 125.64777 * 359.97438 * 14 12 11 16 16 C 1.54910 * 104.83209 * 155.89013 * 15 14 12 17 17 C 1.55154 * 101.58031 * 37.01037 * 16 15 14 18 18 O 1.42901 * 110.87391 * 82.93102 * 17 16 15 19 19 C 1.50703 * 110.71804 * 206.13347 * 17 16 15 20 20 H 1.07995 * 120.00146 * 354.97912 * 19 17 16 21 21 C 1.37877 * 119.99790 * 174.97658 * 19 17 16 22 22 N 1.31518 * 120.00025 * 359.97438 * 21 19 17 23 23 Si 1.86800 * 119.99872 * 180.02562 * 21 19 17 24 24 H 1.48499 * 109.47160 * 0.02562 * 23 21 19 25 25 H 1.48508 * 109.47271 * 119.99917 * 23 21 19 26 26 H 1.48499 * 109.47118 * 239.99676 * 23 21 19 27 27 C 1.47019 * 125.65013 * 179.97438 * 14 12 11 28 28 H 1.09000 * 109.46852 * 299.99564 * 1 2 3 29 29 H 1.08997 * 109.47021 * 59.99827 * 1 2 3 30 30 H 1.09002 * 109.46456 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46852 * 240.00436 * 2 1 3 32 32 H 1.09003 * 109.46868 * 59.99781 * 3 2 1 33 33 H 1.08999 * 109.46590 * 180.02562 * 3 2 1 34 34 H 1.08998 * 109.46697 * 300.00063 * 3 2 1 35 35 H 1.08000 * 119.97133 * 359.97438 * 5 4 2 36 36 H 1.08003 * 119.94080 * 179.69916 * 6 5 4 37 37 H 1.07992 * 119.97547 * 180.02562 * 7 6 5 38 38 H 1.07999 * 120.03129 * 179.97438 * 8 7 6 39 39 H 1.09002 * 109.47234 * 59.99569 * 11 10 9 40 40 H 1.08995 * 109.46760 * 299.99584 * 11 10 9 41 41 H 1.08998 * 110.36718 * 274.72906 * 15 14 12 42 42 H 1.09005 * 110.36600 * 37.05467 * 15 14 12 43 43 H 1.09002 * 111.00097 * 155.08840 * 16 15 14 44 44 H 1.08999 * 111.00452 * 278.93764 * 16 15 14 45 45 H 0.96694 * 114.00195 * 184.93309 * 18 17 16 46 46 H 0.97001 * 119.99663 * 180.02562 * 22 21 19 47 47 H 1.09001 * 109.88389 * 300.46361 * 27 14 12 48 48 H 1.09003 * 109.87977 * 61.62701 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4426 0.0000 4 6 2.0325 -0.7104 1.2304 5 6 1.6936 -0.2428 2.4856 6 6 2.1592 -0.8904 3.6147 7 6 2.9595 -2.0114 3.4912 8 6 3.2959 -2.4865 2.2387 9 6 2.8300 -1.8383 1.1038 10 8 3.1596 -2.3037 -0.1297 11 6 3.9890 -3.4662 -0.1841 12 6 4.2467 -3.8325 -1.6231 13 8 3.7677 -3.1637 -2.5142 14 7 5.0103 -4.9027 -1.9196 15 6 5.6529 -5.7977 -0.9400 16 6 5.8537 -7.1346 -1.6964 17 6 6.2118 -6.6356 -3.1212 18 8 7.5997 -6.3076 -3.2120 19 6 5.8407 -7.6664 -4.1560 20 1 5.4653 -8.6308 -3.8472 21 6 5.9803 -7.3782 -5.4971 22 7 6.4369 -6.2035 -5.8732 23 14 5.5197 -8.6556 -6.7798 24 1 5.0339 -9.8845 -6.1024 25 1 4.4468 -8.1155 -7.6533 26 1 6.7113 -8.9819 -7.6037 27 6 5.3404 -5.3711 -3.2735 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3632 -1.0277 0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.6766 1.9564 0.8900 33 1 3.1301 1.4425 -0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.0687 0.6325 2.5848 36 1 1.8972 -0.5204 4.5950 37 1 3.3217 -2.5158 4.3747 38 1 3.9212 -3.3618 2.1426 39 1 3.4875 -4.2941 0.3171 40 1 4.9363 -3.2601 0.3140 41 1 6.6144 -5.3904 -0.6277 42 1 5.0035 -5.9440 -0.0769 43 1 6.6745 -7.7078 -1.2653 44 1 4.9340 -7.7195 -1.7070 45 1 7.8577 -5.9201 -4.0595 46 1 6.5348 -6.0007 -6.8167 47 1 4.4262 -5.6136 -3.8151 48 1 5.8964 -4.6001 -3.8071 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592838351.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:36:34 Heat of formation + Delta-G solvation = -122.908479 kcal Electronic energy + Delta-G solvation = -28857.063867 eV Core-core repulsion = 24876.132243 eV Total energy + Delta-G solvation = -3980.931624 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.62585 -40.83540 -39.18425 -38.25033 -36.25705 -36.13759 -34.25378 -32.15079 -31.11922 -30.92309 -29.88378 -28.91313 -28.00599 -26.72892 -24.61806 -24.10641 -23.01666 -21.50049 -21.13251 -20.28809 -19.29716 -19.05843 -18.07130 -17.58850 -17.38696 -17.11750 -16.45392 -16.36729 -16.12605 -15.90156 -15.35420 -14.89070 -14.84645 -14.80961 -14.78240 -14.67401 -14.28289 -13.95098 -13.62960 -13.52744 -13.33795 -13.22872 -12.96849 -12.90145 -12.88033 -12.56019 -12.53369 -12.35736 -12.26206 -12.17351 -12.07522 -12.00206 -11.53807 -11.48419 -11.19913 -11.00946 -10.67558 -10.30136 -9.74228 -9.67295 -9.08853 -8.29067 -6.44690 0.41666 0.51444 1.37493 1.41530 1.44924 1.48757 1.52272 2.35131 2.57042 2.84535 2.97961 3.35547 3.70281 3.76945 3.87664 3.89863 3.99636 4.07623 4.14007 4.21803 4.26903 4.30919 4.34244 4.38324 4.52957 4.58409 4.60475 4.67071 4.75783 4.78024 4.89443 4.95143 4.99873 5.10388 5.11886 5.19341 5.20915 5.29131 5.34599 5.36676 5.48112 5.48322 5.61339 5.65386 5.72187 5.89106 6.03428 6.38739 6.53439 6.64340 7.03700 7.24664 7.32471 8.77059 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.019534 B = 0.002552 C = 0.002369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1433.036063 B =10969.508461 C =11814.261968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.060 4.060 3 C -0.135 4.135 4 C -0.121 4.121 5 C -0.082 4.082 6 C -0.155 4.155 7 C -0.087 4.087 8 C -0.213 4.213 9 C 0.099 3.901 10 O -0.319 6.319 11 C 0.059 3.941 12 C 0.513 3.487 13 O -0.585 6.585 14 N -0.611 5.611 15 C 0.099 3.901 16 C -0.112 4.112 17 C 0.232 3.768 18 O -0.586 6.586 19 C -0.555 4.555 20 H 0.069 0.931 21 C 0.023 3.977 22 N -0.917 5.917 23 Si 0.962 3.038 24 H -0.263 1.263 25 H -0.286 1.286 26 H -0.277 1.277 27 C 0.122 3.878 28 H 0.075 0.925 29 H 0.061 0.939 30 H 0.041 0.959 31 H 0.050 0.950 32 H 0.075 0.925 33 H 0.041 0.959 34 H 0.061 0.939 35 H 0.147 0.853 36 H 0.150 0.850 37 H 0.152 0.848 38 H 0.145 0.855 39 H 0.122 0.878 40 H 0.118 0.882 41 H 0.081 0.919 42 H 0.115 0.885 43 H 0.094 0.906 44 H 0.085 0.915 45 H 0.375 0.625 46 H 0.269 0.731 47 H 0.032 0.968 48 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.707 9.055 21.459 24.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.078 4.078 3 C -0.192 4.192 4 C -0.122 4.122 5 C -0.100 4.100 6 C -0.173 4.173 7 C -0.105 4.105 8 C -0.231 4.231 9 C 0.054 3.946 10 O -0.232 6.232 11 C -0.018 4.018 12 C 0.302 3.698 13 O -0.466 6.466 14 N -0.345 5.345 15 C -0.022 4.022 16 C -0.150 4.150 17 C 0.192 3.808 18 O -0.394 6.394 19 C -0.593 4.593 20 H 0.087 0.913 21 C -0.177 4.177 22 N -0.556 5.556 23 Si 0.788 3.212 24 H -0.187 1.187 25 H -0.212 1.212 26 H -0.203 1.203 27 C -0.001 4.001 28 H 0.094 0.906 29 H 0.080 0.920 30 H 0.061 0.939 31 H 0.068 0.932 32 H 0.094 0.906 33 H 0.060 0.940 34 H 0.080 0.920 35 H 0.165 0.835 36 H 0.168 0.832 37 H 0.170 0.830 38 H 0.163 0.837 39 H 0.139 0.861 40 H 0.136 0.864 41 H 0.100 0.900 42 H 0.133 0.867 43 H 0.112 0.888 44 H 0.104 0.896 45 H 0.224 0.776 46 H 0.078 0.922 47 H 0.051 0.949 48 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -8.004 9.403 21.282 24.606 hybrid contribution 0.115 -0.467 -2.258 2.309 sum -7.889 8.936 19.024 22.450 Atomic orbital electron populations 1.21795 0.93227 1.01441 1.02775 1.19977 0.96746 0.96340 0.94784 1.21793 1.00370 0.94305 1.02776 1.19450 1.00715 0.95430 0.96555 1.21076 0.98709 0.99901 0.90267 1.21427 0.99659 0.96800 0.99416 1.21300 0.96338 0.95965 0.96865 1.21530 1.05818 1.03429 0.92368 1.19260 0.96807 0.94919 0.83593 1.86112 1.66013 1.43752 1.27368 1.22464 0.97445 0.89190 0.92744 1.20512 0.78146 0.79593 0.91536 1.90689 1.52327 1.52658 1.50901 1.48754 1.48617 1.27364 1.09758 1.22662 0.98609 0.89189 0.91757 1.22757 1.02405 0.96282 0.93531 1.19734 0.78530 0.88783 0.93797 1.86088 1.27155 1.84926 1.41185 1.21882 1.44671 1.01221 0.91551 0.91312 1.25834 0.93849 0.97212 1.00834 1.69814 1.46066 1.22201 1.17508 0.85435 0.77784 0.79350 0.78648 1.18694 1.21213 1.20309 1.22547 0.98379 0.97474 0.81662 0.90583 0.92041 0.93939 0.93173 0.90580 0.93989 0.92039 0.83509 0.83188 0.83048 0.83692 0.86074 0.86422 0.90049 0.86738 0.88757 0.89617 0.77602 0.92167 0.94942 0.95141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.68 9.00 71.99 0.65 -2.03 16 2 C -0.06 -1.45 3.06 -11.54 -0.04 -1.49 16 3 C -0.14 -2.70 9.01 71.98 0.65 -2.05 16 4 C -0.12 -2.84 4.79 -19.77 -0.09 -2.94 16 5 C -0.08 -1.41 8.71 22.25 0.19 -1.21 16 6 C -0.16 -2.23 10.04 22.28 0.22 -2.01 16 7 C -0.09 -1.31 10.04 22.25 0.22 -1.09 16 8 C -0.21 -4.13 9.04 22.36 0.20 -3.93 16 9 C 0.10 2.57 6.66 22.51 0.15 2.72 16 10 O -0.32 -10.26 8.44 -73.35 -0.62 -10.88 16 11 C 0.06 1.62 4.23 71.24 0.30 1.92 16 12 C 0.51 20.33 7.93 87.66 0.69 21.02 16 13 O -0.59 -29.64 16.83 16.02 0.27 -29.37 16 14 N -0.61 -24.06 3.33 -811.79 -2.70 -26.76 16 15 C 0.10 2.91 6.68 86.86 0.58 3.49 16 16 C -0.11 -3.97 6.23 31.99 0.20 -3.77 16 17 C 0.23 10.95 0.85 -10.35 -0.01 10.94 16 18 O -0.59 -28.91 13.08 -148.98 -1.95 -30.85 16 19 C -0.56 -28.73 8.12 25.60 0.21 -28.53 16 20 H 0.07 3.45 7.78 -2.91 -0.02 3.43 16 21 C 0.02 1.23 5.28 84.65 0.45 1.68 16 22 N -0.92 -50.20 10.97 21.45 0.24 -49.97 16 23 Si 0.96 42.15 29.54 68.60 2.03 44.18 16 24 H -0.26 -11.06 7.11 99.48 0.71 -10.35 16 25 H -0.29 -12.64 7.11 99.48 0.71 -11.93 16 26 H -0.28 -11.91 7.11 99.48 0.71 -11.20 16 27 C 0.12 6.05 5.24 86.73 0.45 6.50 16 28 H 0.08 1.14 7.37 -2.39 -0.02 1.12 16 29 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 30 H 0.04 0.93 8.14 -2.39 -0.02 0.91 16 31 H 0.05 1.62 6.99 -2.39 -0.02 1.60 16 32 H 0.08 1.14 7.41 -2.39 -0.02 1.13 16 33 H 0.04 0.93 8.14 -2.39 -0.02 0.91 16 34 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 35 H 0.15 1.80 7.10 -2.91 -0.02 1.78 16 36 H 0.15 1.27 8.06 -2.91 -0.02 1.25 16 37 H 0.15 1.38 8.06 -2.91 -0.02 1.36 16 38 H 0.15 2.16 6.30 -2.91 -0.02 2.14 16 39 H 0.12 2.47 7.37 -2.39 -0.02 2.45 16 40 H 0.12 2.50 7.66 -2.39 -0.02 2.48 16 41 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 42 H 0.11 2.22 7.48 -2.38 -0.02 2.21 16 43 H 0.09 3.05 8.14 -2.39 -0.02 3.03 16 44 H 0.09 2.90 8.04 -2.39 -0.02 2.88 16 45 H 0.37 19.55 7.45 -74.06 -0.55 19.00 16 46 H 0.27 14.15 8.31 -92.71 -0.77 13.38 16 47 H 0.03 1.79 7.81 -2.39 -0.02 1.77 16 48 H 0.03 1.69 7.92 -2.39 -0.02 1.67 16 Total: -1.00 -71.65 388.36 2.71 -68.94 By element: Atomic # 1 Polarization: 35.08 SS G_CDS: 0.41 Total: 35.49 kcal Atomic # 6 Polarization: -5.81 SS G_CDS: 5.04 Total: -0.77 kcal Atomic # 7 Polarization: -74.26 SS G_CDS: -2.47 Total: -76.73 kcal Atomic # 8 Polarization: -68.81 SS G_CDS: -2.30 Total: -71.11 kcal Atomic # 14 Polarization: 42.15 SS G_CDS: 2.03 Total: 44.18 kcal Total: -71.65 2.71 -68.94 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592838351.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.967 kcal (2) G-P(sol) polarization free energy of solvation -71.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.942 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds