Wall clock time and date at job start Tue Mar 31 2020 17:41:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38265 * 119.97590 * 2 1 4 4 C 1.38263 * 120.11626 * 179.97438 * 3 2 1 5 5 C 1.50694 * 119.97295 * 180.02562 * 4 3 2 6 6 C 1.38146 * 120.05308 * 0.02562 * 4 3 2 7 7 C 1.38735 * 119.94411 * 359.97438 * 6 4 3 8 8 O 1.35905 * 120.05402 * 180.02562 * 7 6 4 9 9 C 1.42901 * 116.99885 * 180.02562 * 8 7 6 10 10 C 1.53004 * 109.46898 * 180.02562 * 9 8 7 11 11 C 1.50700 * 109.46723 * 179.97438 * 10 9 8 12 12 O 1.21282 * 120.00254 * 0.02562 * 11 10 9 13 13 N 1.34778 * 119.99819 * 179.97438 * 11 10 9 14 14 C 1.47021 * 125.64744 * 359.96801 * 13 11 10 15 15 C 1.54326 * 107.27002 * 181.08547 * 14 13 11 16 16 C 1.55151 * 102.94313 * 22.19392 * 15 14 13 17 17 O 1.42901 * 111.00842 * 82.56580 * 16 15 14 18 18 C 1.50698 * 111.00641 * 206.42337 * 16 15 14 19 19 H 1.07993 * 120.00138 * 112.19363 * 18 16 15 20 20 C 1.37875 * 119.99529 * 292.19405 * 18 16 15 21 21 N 1.31514 * 120.00358 * 359.97438 * 20 18 16 22 22 Si 1.86808 * 119.99716 * 179.97438 * 20 18 16 23 23 H 1.48501 * 109.47047 * 59.99888 * 22 20 18 24 24 H 1.48503 * 109.46890 * 179.97438 * 22 20 18 25 25 H 1.48497 * 109.46918 * 299.99889 * 22 20 18 26 26 C 1.47421 * 125.64805 * 179.97438 * 13 11 10 27 27 C 1.38153 * 119.97200 * 180.27691 * 2 1 3 28 28 H 1.08998 * 109.47209 * 89.99994 * 1 2 3 29 29 H 1.09005 * 109.46736 * 210.00293 * 1 2 3 30 30 H 1.08997 * 109.46991 * 329.99687 * 1 2 3 31 31 H 1.08002 * 119.93806 * 359.97438 * 3 2 1 32 32 H 1.09005 * 109.47412 * 269.97614 * 5 4 3 33 33 H 1.08993 * 109.47382 * 29.97906 * 5 4 3 34 34 H 1.09007 * 109.46936 * 149.98043 * 5 4 3 35 35 H 1.08001 * 120.02687 * 179.97438 * 6 4 3 36 36 H 1.08995 * 109.47354 * 60.00060 * 9 8 7 37 37 H 1.09003 * 109.46695 * 299.99980 * 9 8 7 38 38 H 1.08995 * 109.47243 * 59.99779 * 10 9 8 39 39 H 1.08996 * 109.46877 * 299.99456 * 10 9 8 40 40 H 1.08996 * 109.88310 * 300.50411 * 14 13 11 41 41 H 1.09002 * 109.88672 * 61.51452 * 14 13 11 42 42 H 1.09000 * 110.72348 * 263.82382 * 15 14 13 43 43 H 1.09003 * 110.71705 * 140.55404 * 15 14 13 44 44 H 0.96708 * 113.99322 * 67.80350 * 17 16 15 45 45 H 0.96999 * 120.00046 * 179.97438 * 21 20 18 46 46 H 1.09002 * 110.36865 * 37.00989 * 26 13 11 47 47 H 1.09001 * 110.37117 * 274.68307 * 26 13 11 48 48 H 1.08007 * 120.02853 * 0.02574 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1977 0.0000 4 6 3.5805 1.2011 0.0005 5 6 4.3301 2.5083 0.0011 6 6 4.2752 0.0070 0.0005 7 6 3.5844 -1.1961 0.0005 8 8 4.2657 -2.3721 0.0011 9 6 3.4891 -3.5717 0.0005 10 6 4.4229 -4.7837 0.0018 11 6 3.6039 -6.0487 0.0018 12 8 2.3927 -5.9870 0.0004 13 7 4.2175 -7.2487 0.0024 14 6 5.6714 -7.4677 0.0024 15 6 5.9050 -8.9929 -0.0247 16 6 4.5752 -9.5378 -0.6096 17 8 4.5726 -9.4587 -2.0364 18 6 4.3207 -10.9497 -0.1485 19 1 3.5008 -11.1592 0.5224 20 6 5.1347 -11.9741 -0.5833 21 7 6.1329 -11.7191 -1.4008 22 14 4.8197 -13.7243 -0.0113 23 1 3.4587 -14.1448 -0.4308 24 1 5.8266 -14.6320 -0.6175 25 1 4.9231 -13.7874 1.4687 26 6 3.5421 -8.5591 0.0030 27 6 2.1972 -1.1968 -0.0058 28 1 -0.3633 0.0000 -1.0276 29 1 -0.3633 -0.8900 0.5139 30 1 -0.3633 0.8899 0.5139 31 1 1.6564 2.1322 -0.0004 32 1 4.5117 2.8236 -1.0264 33 1 3.7385 3.2662 0.5145 34 1 5.2826 2.3807 0.5156 35 1 5.3552 0.0102 0.0005 36 1 2.8610 -3.5975 -0.8900 37 1 2.8596 -3.5974 0.8900 38 1 5.0507 -4.7577 0.8925 39 1 5.0526 -4.7581 -0.8875 40 1 6.1153 -7.0089 -0.8810 41 1 6.1109 -7.0390 0.9031 42 1 6.0690 -9.3760 0.9825 43 1 6.7434 -9.2431 -0.6748 44 1 5.2037 -10.0536 -2.4644 45 1 6.7057 -12.4397 -1.7063 46 1 2.6430 -8.5227 -0.6121 47 1 3.2941 -8.8576 1.0216 48 1 1.6572 -2.1321 -0.0107 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592838505.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:41:35 Heat of formation + Delta-G solvation = -113.655289 kcal Electronic energy + Delta-G solvation = -27890.370453 eV Core-core repulsion = 23909.840078 eV Total energy + Delta-G solvation = -3980.530375 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.43069 -39.56991 -38.04556 -37.26090 -34.37612 -33.78173 -32.40323 -32.18590 -30.66874 -29.72494 -28.34826 -27.46690 -27.13355 -25.52548 -23.89664 -22.21946 -21.84646 -20.70684 -19.75696 -18.78990 -17.82083 -17.26752 -16.60490 -16.43489 -16.20885 -16.00260 -15.23175 -15.02330 -14.91323 -14.24930 -14.20891 -13.95837 -13.72222 -13.69703 -13.47360 -13.21712 -13.09369 -12.79406 -12.77466 -12.27225 -12.13869 -12.04937 -11.83267 -11.72774 -11.61838 -11.48750 -11.38732 -11.36596 -10.94943 -10.89537 -10.70767 -10.63547 -10.54439 -10.09932 -9.56981 -9.44651 -8.82167 -8.72764 -8.29890 -8.27527 -8.07963 -6.34703 -4.42663 1.12092 1.27875 2.82266 2.94574 3.18309 3.23593 3.26682 3.53123 3.68245 4.22261 4.50187 4.54260 4.73062 4.83451 4.90181 4.91342 4.99600 5.02635 5.10197 5.14128 5.30214 5.33221 5.37726 5.38684 5.46891 5.49826 5.60350 5.62690 5.63080 5.73115 5.77911 5.82292 5.95446 5.96543 6.16665 6.21833 6.31346 6.37445 6.42333 6.57923 6.63128 6.81520 6.88952 7.24342 7.26639 7.29847 7.68583 7.92857 8.03166 8.49162 8.59665 9.26380 9.42388 10.73021 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.031562 B = 0.001908 C = 0.001836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 886.924707 B =14675.070546 C =15248.361096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.043 4.043 3 C -0.164 4.164 4 C -0.048 4.048 5 C -0.113 4.113 6 C -0.162 4.162 7 C 0.144 3.856 8 O -0.317 6.317 9 C 0.077 3.923 10 C -0.135 4.135 11 C 0.528 3.472 12 O -0.558 6.558 13 N -0.603 5.603 14 C 0.098 3.902 15 C -0.140 4.140 16 C 0.249 3.751 17 O -0.585 6.585 18 C -0.537 4.537 19 H 0.065 0.935 20 C 0.072 3.928 21 N -0.898 5.898 22 Si 0.905 3.095 23 H -0.274 1.274 24 H -0.285 1.285 25 H -0.275 1.275 26 C 0.119 3.881 27 C -0.214 4.214 28 H 0.073 0.927 29 H 0.068 0.932 30 H 0.067 0.933 31 H 0.121 0.879 32 H 0.072 0.928 33 H 0.067 0.933 34 H 0.068 0.932 35 H 0.129 0.871 36 H 0.072 0.928 37 H 0.071 0.929 38 H 0.101 0.899 39 H 0.103 0.897 40 H 0.060 0.940 41 H 0.055 0.945 42 H 0.069 0.931 43 H 0.084 0.916 44 H 0.386 0.614 45 H 0.270 0.730 46 H 0.072 0.928 47 H 0.072 0.928 48 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.636 22.662 3.126 22.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.044 4.044 3 C -0.182 4.182 4 C -0.048 4.048 5 C -0.170 4.170 6 C -0.180 4.180 7 C 0.098 3.902 8 O -0.231 6.231 9 C 0.002 3.998 10 C -0.175 4.175 11 C 0.316 3.684 12 O -0.438 6.438 13 N -0.335 5.335 14 C -0.025 4.025 15 C -0.178 4.178 16 C 0.208 3.792 17 O -0.395 6.395 18 C -0.575 4.575 19 H 0.083 0.917 20 C -0.130 4.130 21 N -0.537 5.537 22 Si 0.732 3.268 23 H -0.200 1.200 24 H -0.211 1.211 25 H -0.200 1.200 26 C -0.002 4.002 27 C -0.233 4.233 28 H 0.091 0.909 29 H 0.087 0.913 30 H 0.086 0.914 31 H 0.139 0.861 32 H 0.091 0.909 33 H 0.086 0.914 34 H 0.087 0.913 35 H 0.147 0.853 36 H 0.090 0.910 37 H 0.089 0.911 38 H 0.119 0.881 39 H 0.121 0.879 40 H 0.078 0.922 41 H 0.074 0.926 42 H 0.087 0.913 43 H 0.102 0.898 44 H 0.238 0.762 45 H 0.080 0.920 46 H 0.090 0.910 47 H 0.090 0.910 48 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -2.399 23.063 3.144 23.400 hybrid contribution 0.348 -1.591 0.176 1.638 sum -2.051 21.473 3.320 21.824 Atomic orbital electron populations 1.20830 0.91008 1.02933 1.02576 1.19699 0.96008 0.92419 0.96229 1.20779 0.93417 0.97439 1.06541 1.19646 0.93607 0.94528 0.96986 1.20792 0.99977 0.93720 1.02504 1.20256 1.00153 0.89259 1.08374 1.18938 0.90444 0.85782 0.95046 1.85979 1.36257 1.12470 1.88355 1.22458 0.93266 0.81075 1.03005 1.21427 0.99190 0.91043 1.05824 1.19735 0.87803 0.83814 0.77004 1.90676 1.14133 1.87036 1.51962 1.48571 1.08472 1.05840 1.70639 1.22211 0.80183 1.00176 0.99926 1.23214 1.02403 0.89903 1.02310 1.19582 0.88285 0.91747 0.79583 1.86100 1.66064 1.67256 1.20072 1.21435 1.14910 0.91608 1.29530 0.91653 1.24994 0.94102 0.99702 0.94204 1.69545 1.17465 1.33536 1.33197 0.86442 0.78247 0.83083 0.79023 1.19965 1.21073 1.20021 1.22423 0.97144 0.80366 1.00296 1.21236 0.93090 0.99234 1.09725 0.90884 0.91288 0.91405 0.86142 0.90942 0.91400 0.91339 0.85325 0.90997 0.91072 0.88063 0.87913 0.92162 0.92631 0.91268 0.89770 0.76180 0.91957 0.90993 0.90978 0.85099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.93 10.01 36.01 0.36 -0.57 16 2 C -0.04 -0.45 5.88 -104.64 -0.62 -1.07 16 3 C -0.16 -1.56 9.35 -39.56 -0.37 -1.93 16 4 C -0.05 -0.46 5.88 -104.65 -0.62 -1.07 16 5 C -0.11 -0.74 10.01 36.00 0.36 -0.38 16 6 C -0.16 -1.80 9.64 -39.43 -0.38 -2.18 16 7 C 0.14 1.81 6.69 -39.22 -0.26 1.55 16 8 O -0.32 -4.21 10.14 -19.44 -0.20 -4.41 16 9 C 0.08 1.03 4.03 37.16 0.15 1.18 16 10 C -0.13 -1.83 5.26 -27.88 -0.15 -1.98 16 11 C 0.53 9.54 7.85 -10.99 -0.09 9.45 16 12 O -0.56 -11.68 16.24 5.56 0.09 -11.59 16 13 N -0.60 -11.57 3.33 -170.51 -0.57 -12.13 16 14 C 0.10 1.69 6.49 -3.06 -0.02 1.67 16 15 C -0.14 -2.89 5.64 -24.90 -0.14 -3.03 16 16 C 0.25 5.87 0.89 -89.61 -0.08 5.79 16 17 O -0.58 -14.76 13.18 -35.23 -0.46 -15.23 16 18 C -0.54 -13.65 8.25 -34.44 -0.28 -13.94 16 19 H 0.07 1.65 7.77 -52.49 -0.41 1.24 16 20 C 0.07 1.82 5.30 -17.82 -0.09 1.73 16 21 N -0.90 -22.65 10.79 55.43 0.60 -22.05 16 22 Si 0.90 19.82 29.54 -169.99 -5.02 14.79 16 23 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 24 H -0.29 -6.20 7.11 56.52 0.40 -5.80 16 25 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 26 C 0.12 2.61 6.08 -2.52 -0.02 2.59 16 27 C -0.21 -2.56 8.69 -39.43 -0.34 -2.90 16 28 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.07 0.54 8.09 -51.93 -0.42 0.12 16 30 H 0.07 0.44 8.08 -51.93 -0.42 0.02 16 31 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 32 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.07 0.37 8.08 -51.93 -0.42 -0.05 16 34 H 0.07 0.40 8.09 -51.92 -0.42 -0.02 16 35 H 0.13 1.27 8.06 -52.49 -0.42 0.84 16 36 H 0.07 0.99 7.61 -51.93 -0.40 0.59 16 37 H 0.07 0.95 7.63 -51.93 -0.40 0.55 16 38 H 0.10 1.20 8.14 -51.93 -0.42 0.78 16 39 H 0.10 1.30 8.14 -51.93 -0.42 0.87 16 40 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 41 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 42 H 0.07 1.43 8.03 -51.93 -0.42 1.01 16 43 H 0.08 1.82 7.85 -51.93 -0.41 1.41 16 44 H 0.39 9.83 6.93 45.56 0.32 10.15 16 45 H 0.27 6.56 8.31 -40.82 -0.34 6.22 16 46 H 0.07 1.68 8.04 -51.93 -0.42 1.26 16 47 H 0.07 1.52 8.01 -51.93 -0.42 1.10 16 48 H 0.13 1.54 6.30 -52.48 -0.33 1.21 16 LS Contribution 394.24 15.07 5.94 5.94 Total: -1.00 -28.69 394.24 -9.27 -37.96 By element: Atomic # 1 Polarization: 18.88 SS G_CDS: -7.07 Total: 11.81 kcal Atomic # 6 Polarization: -2.50 SS G_CDS: -2.58 Total: -5.09 kcal Atomic # 7 Polarization: -34.21 SS G_CDS: 0.03 Total: -34.18 kcal Atomic # 8 Polarization: -30.66 SS G_CDS: -0.57 Total: -31.23 kcal Atomic # 14 Polarization: 19.82 SS G_CDS: -5.02 Total: 14.79 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -28.69 -9.27 -37.96 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592838505.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.700 kcal (2) G-P(sol) polarization free energy of solvation -28.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.956 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds