Wall clock time and date at job start Tue Mar 31 2020 17:41:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38265 * 119.97590 * 2 1 4 4 C 1.38263 * 120.11626 * 179.97438 * 3 2 1 5 5 C 1.50694 * 119.97295 * 180.02562 * 4 3 2 6 6 C 1.38146 * 120.05308 * 0.02562 * 4 3 2 7 7 C 1.38735 * 119.94411 * 359.97438 * 6 4 3 8 8 O 1.35905 * 120.05402 * 180.02562 * 7 6 4 9 9 C 1.42901 * 116.99885 * 180.02562 * 8 7 6 10 10 C 1.53004 * 109.46898 * 180.02562 * 9 8 7 11 11 C 1.50700 * 109.46723 * 179.97438 * 10 9 8 12 12 O 1.21282 * 120.00254 * 0.02562 * 11 10 9 13 13 N 1.34778 * 119.99819 * 179.97438 * 11 10 9 14 14 C 1.47021 * 125.64744 * 359.96801 * 13 11 10 15 15 C 1.54326 * 107.27002 * 181.08547 * 14 13 11 16 16 C 1.55151 * 102.94313 * 22.19392 * 15 14 13 17 17 O 1.42901 * 111.00842 * 82.56580 * 16 15 14 18 18 C 1.50698 * 111.00641 * 206.42337 * 16 15 14 19 19 H 1.07993 * 120.00138 * 112.19363 * 18 16 15 20 20 C 1.37875 * 119.99529 * 292.19405 * 18 16 15 21 21 N 1.31514 * 120.00358 * 359.97438 * 20 18 16 22 22 Si 1.86808 * 119.99716 * 179.97438 * 20 18 16 23 23 H 1.48501 * 109.47047 * 59.99888 * 22 20 18 24 24 H 1.48503 * 109.46890 * 179.97438 * 22 20 18 25 25 H 1.48497 * 109.46918 * 299.99889 * 22 20 18 26 26 C 1.47421 * 125.64805 * 179.97438 * 13 11 10 27 27 C 1.38153 * 119.97200 * 180.27691 * 2 1 3 28 28 H 1.08998 * 109.47209 * 89.99994 * 1 2 3 29 29 H 1.09005 * 109.46736 * 210.00293 * 1 2 3 30 30 H 1.08997 * 109.46991 * 329.99687 * 1 2 3 31 31 H 1.08002 * 119.93806 * 359.97438 * 3 2 1 32 32 H 1.09005 * 109.47412 * 269.97614 * 5 4 3 33 33 H 1.08993 * 109.47382 * 29.97906 * 5 4 3 34 34 H 1.09007 * 109.46936 * 149.98043 * 5 4 3 35 35 H 1.08001 * 120.02687 * 179.97438 * 6 4 3 36 36 H 1.08995 * 109.47354 * 60.00060 * 9 8 7 37 37 H 1.09003 * 109.46695 * 299.99980 * 9 8 7 38 38 H 1.08995 * 109.47243 * 59.99779 * 10 9 8 39 39 H 1.08996 * 109.46877 * 299.99456 * 10 9 8 40 40 H 1.08996 * 109.88310 * 300.50411 * 14 13 11 41 41 H 1.09002 * 109.88672 * 61.51452 * 14 13 11 42 42 H 1.09000 * 110.72348 * 263.82382 * 15 14 13 43 43 H 1.09003 * 110.71705 * 140.55404 * 15 14 13 44 44 H 0.96708 * 113.99322 * 67.80350 * 17 16 15 45 45 H 0.96999 * 120.00046 * 179.97438 * 21 20 18 46 46 H 1.09002 * 110.36865 * 37.00989 * 26 13 11 47 47 H 1.09001 * 110.37117 * 274.68307 * 26 13 11 48 48 H 1.08007 * 120.02853 * 0.02574 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1977 0.0000 4 6 3.5805 1.2011 0.0005 5 6 4.3301 2.5083 0.0011 6 6 4.2752 0.0070 0.0005 7 6 3.5844 -1.1961 0.0005 8 8 4.2657 -2.3721 0.0011 9 6 3.4891 -3.5717 0.0005 10 6 4.4229 -4.7837 0.0018 11 6 3.6039 -6.0487 0.0018 12 8 2.3927 -5.9870 0.0004 13 7 4.2175 -7.2487 0.0024 14 6 5.6714 -7.4677 0.0024 15 6 5.9050 -8.9929 -0.0247 16 6 4.5752 -9.5378 -0.6096 17 8 4.5726 -9.4587 -2.0364 18 6 4.3207 -10.9497 -0.1485 19 1 3.5008 -11.1592 0.5224 20 6 5.1347 -11.9741 -0.5833 21 7 6.1329 -11.7191 -1.4008 22 14 4.8197 -13.7243 -0.0113 23 1 3.4587 -14.1448 -0.4308 24 1 5.8266 -14.6320 -0.6175 25 1 4.9231 -13.7874 1.4687 26 6 3.5421 -8.5591 0.0030 27 6 2.1972 -1.1968 -0.0058 28 1 -0.3633 0.0000 -1.0276 29 1 -0.3633 -0.8900 0.5139 30 1 -0.3633 0.8899 0.5139 31 1 1.6564 2.1322 -0.0004 32 1 4.5117 2.8236 -1.0264 33 1 3.7385 3.2662 0.5145 34 1 5.2826 2.3807 0.5156 35 1 5.3552 0.0102 0.0005 36 1 2.8610 -3.5975 -0.8900 37 1 2.8596 -3.5974 0.8900 38 1 5.0507 -4.7577 0.8925 39 1 5.0526 -4.7581 -0.8875 40 1 6.1153 -7.0089 -0.8810 41 1 6.1109 -7.0390 0.9031 42 1 6.0690 -9.3760 0.9825 43 1 6.7434 -9.2431 -0.6748 44 1 5.2037 -10.0536 -2.4644 45 1 6.7057 -12.4397 -1.7063 46 1 2.6430 -8.5227 -0.6121 47 1 3.2941 -8.8576 1.0216 48 1 1.6572 -2.1321 -0.0107 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592838505.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:41:34 Heat of formation + Delta-G solvation = -130.277454 kcal Electronic energy + Delta-G solvation = -27891.091244 eV Core-core repulsion = 23909.840078 eV Total energy + Delta-G solvation = -3981.251166 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.41765 -40.95725 -39.19386 -38.67497 -36.13577 -34.47964 -34.14475 -33.50118 -31.78059 -31.13767 -29.98731 -28.11613 -27.94790 -27.16519 -25.20366 -23.65946 -22.71439 -21.67338 -21.37024 -20.20878 -19.21356 -18.81422 -17.83694 -17.57148 -17.15305 -16.95118 -16.91379 -16.62491 -16.34722 -15.84369 -15.35196 -15.00454 -14.81779 -14.67894 -14.49848 -14.16900 -14.03909 -13.96233 -13.82673 -13.61447 -13.43155 -13.34751 -13.21354 -13.06259 -12.86855 -12.63452 -12.55415 -12.50346 -12.39083 -12.35452 -12.28425 -11.88194 -11.76216 -11.57210 -11.32061 -11.04528 -10.64335 -10.16295 -9.62714 -9.59629 -9.14686 -8.25962 -6.40413 0.32837 0.45785 1.43213 1.45307 1.50787 1.52893 1.67211 2.35103 2.43949 2.73319 2.99062 3.48600 3.69965 3.80625 3.83427 3.84994 3.91258 4.03684 4.08495 4.26816 4.31747 4.35332 4.37079 4.41070 4.49462 4.58531 4.61069 4.65305 4.67245 4.71903 4.77323 4.83189 4.87506 4.87869 4.99051 5.12506 5.16840 5.23830 5.29586 5.36770 5.43695 5.52605 5.56153 5.66315 5.76715 5.86440 6.04204 6.37713 6.54953 6.63343 7.03599 7.30812 7.44377 8.80185 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.031562 B = 0.001908 C = 0.001836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 886.924707 B =14675.070546 C =15248.361096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.052 4.052 3 C -0.166 4.166 4 C -0.048 4.048 5 C -0.112 4.112 6 C -0.174 4.174 7 C 0.118 3.882 8 O -0.322 6.322 9 C 0.085 3.915 10 C -0.121 4.121 11 C 0.525 3.475 12 O -0.593 6.593 13 N -0.608 5.608 14 C 0.104 3.896 15 C -0.131 4.131 16 C 0.233 3.767 17 O -0.596 6.596 18 C -0.562 4.562 19 H 0.057 0.943 20 C 0.036 3.964 21 N -0.909 5.909 22 Si 0.961 3.039 23 H -0.279 1.279 24 H -0.279 1.279 25 H -0.270 1.270 26 C 0.124 3.876 27 C -0.233 4.233 28 H 0.079 0.921 29 H 0.064 0.936 30 H 0.086 0.914 31 H 0.146 0.854 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.075 0.925 35 H 0.138 0.862 36 H 0.060 0.940 37 H 0.065 0.935 38 H 0.128 0.872 39 H 0.119 0.881 40 H 0.075 0.925 41 H 0.094 0.906 42 H 0.066 0.934 43 H 0.072 0.928 44 H 0.382 0.618 45 H 0.273 0.727 46 H 0.046 0.954 47 H 0.075 0.925 48 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.724 24.748 3.820 25.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.053 4.053 3 C -0.184 4.184 4 C -0.048 4.048 5 C -0.168 4.168 6 C -0.192 4.192 7 C 0.073 3.927 8 O -0.236 6.236 9 C 0.009 3.991 10 C -0.161 4.161 11 C 0.315 3.685 12 O -0.475 6.475 13 N -0.340 5.340 14 C -0.018 4.018 15 C -0.170 4.170 16 C 0.193 3.807 17 O -0.406 6.406 18 C -0.600 4.600 19 H 0.075 0.925 20 C -0.166 4.166 21 N -0.549 5.549 22 Si 0.786 3.214 23 H -0.205 1.205 24 H -0.205 1.205 25 H -0.195 1.195 26 C 0.002 3.998 27 C -0.252 4.252 28 H 0.098 0.902 29 H 0.083 0.917 30 H 0.105 0.895 31 H 0.164 0.836 32 H 0.101 0.899 33 H 0.101 0.899 34 H 0.094 0.906 35 H 0.155 0.845 36 H 0.078 0.922 37 H 0.084 0.916 38 H 0.146 0.854 39 H 0.137 0.863 40 H 0.094 0.906 41 H 0.113 0.887 42 H 0.085 0.915 43 H 0.091 0.909 44 H 0.233 0.767 45 H 0.082 0.918 46 H 0.064 0.936 47 H 0.093 0.907 48 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -1.468 25.173 3.842 25.507 hybrid contribution 0.009 -2.178 -0.065 2.179 sum -1.460 22.996 3.777 23.350 Atomic orbital electron populations 1.20875 0.89474 1.03675 1.03225 1.20038 0.97321 0.92254 0.95644 1.21141 0.93699 0.98070 1.05441 1.20060 0.93977 0.95319 0.95474 1.20861 1.00168 0.92309 1.03478 1.20510 1.00793 0.89279 1.08652 1.19230 0.90936 0.85931 0.96572 1.85933 1.36274 1.12565 1.88818 1.22275 0.93080 0.81452 1.02272 1.21353 0.98622 0.88294 1.07801 1.20495 0.87741 0.84568 0.75667 1.90660 1.16009 1.87530 1.53324 1.48629 1.09124 1.05218 1.70991 1.22267 0.79102 0.97818 1.02611 1.23003 1.00136 0.92391 1.01443 1.19793 0.90498 0.91681 0.78778 1.86086 1.66146 1.67092 1.21313 1.21682 1.15122 0.93156 1.30071 0.92468 1.25616 0.93938 1.02703 0.94300 1.69609 1.17621 1.34361 1.33307 0.85569 0.77761 0.79252 0.78774 1.20460 1.20459 1.19490 1.22175 0.96030 0.81940 0.99700 1.21314 0.93160 0.99714 1.11021 0.90198 0.91706 0.89528 0.83643 0.89903 0.89866 0.90646 0.84460 0.92156 0.91632 0.85421 0.86270 0.90629 0.88748 0.91500 0.90943 0.76691 0.91769 0.93557 0.90714 0.85987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.71 10.01 71.24 0.71 -0.99 16 2 C -0.05 -1.05 5.88 -19.88 -0.12 -1.16 16 3 C -0.17 -2.83 9.35 22.28 0.21 -2.62 16 4 C -0.05 -0.83 5.88 -19.88 -0.12 -0.95 16 5 C -0.11 -1.15 10.01 71.23 0.71 -0.43 16 6 C -0.17 -3.68 9.64 22.37 0.22 -3.46 16 7 C 0.12 2.97 6.69 22.51 0.15 3.12 16 8 O -0.32 -8.39 10.14 -92.48 -0.94 -9.32 16 9 C 0.08 2.24 4.03 71.98 0.29 2.53 16 10 C -0.12 -3.08 5.26 29.85 0.16 -2.92 16 11 C 0.53 18.63 7.85 87.66 0.69 19.32 16 12 O -0.59 -25.25 16.24 -3.04 -0.05 -25.30 16 13 N -0.61 -22.83 3.33 -811.75 -2.70 -25.53 16 14 C 0.10 3.36 6.49 86.73 0.56 3.93 16 15 C -0.13 -5.33 5.64 31.78 0.18 -5.15 16 16 C 0.23 11.13 0.89 -10.14 -0.01 11.12 16 17 O -0.60 -30.70 13.18 -148.98 -1.96 -32.67 16 18 C -0.56 -29.04 8.25 25.60 0.21 -28.83 16 19 H 0.06 2.96 7.77 -2.91 -0.02 2.93 16 20 C 0.04 1.79 5.30 84.65 0.45 2.23 16 21 N -0.91 -45.93 10.79 21.45 0.23 -45.70 16 22 Si 0.96 40.59 29.54 68.60 2.03 42.61 16 23 H -0.28 -11.92 7.11 99.48 0.71 -11.22 16 24 H -0.28 -11.46 7.11 99.48 0.71 -10.76 16 25 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 26 C 0.12 5.53 6.08 86.86 0.53 6.06 16 27 C -0.23 -5.64 8.69 22.37 0.19 -5.45 16 28 H 0.08 1.06 8.14 -2.39 -0.02 1.05 16 29 H 0.06 1.00 8.09 -2.38 -0.02 0.98 16 30 H 0.09 0.93 8.08 -2.39 -0.02 0.91 16 31 H 0.15 1.69 8.06 -2.91 -0.02 1.67 16 32 H 0.08 0.71 8.14 -2.38 -0.02 0.70 16 33 H 0.08 0.62 8.08 -2.39 -0.02 0.60 16 34 H 0.07 0.68 8.09 -2.38 -0.02 0.67 16 35 H 0.14 2.53 8.06 -2.91 -0.02 2.51 16 36 H 0.06 1.71 7.61 -2.39 -0.02 1.69 16 37 H 0.07 1.78 7.63 -2.39 -0.02 1.76 16 38 H 0.13 2.62 8.14 -2.39 -0.02 2.60 16 39 H 0.12 2.70 8.14 -2.39 -0.02 2.68 16 40 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 41 H 0.09 2.38 8.14 -2.39 -0.02 2.36 16 42 H 0.07 2.71 8.03 -2.39 -0.02 2.69 16 43 H 0.07 3.10 7.85 -2.39 -0.02 3.08 16 44 H 0.38 19.86 6.93 -74.05 -0.51 19.35 16 45 H 0.27 13.14 8.31 -92.71 -0.77 12.37 16 46 H 0.05 2.25 8.04 -2.39 -0.02 2.23 16 47 H 0.07 3.23 8.01 -2.39 -0.02 3.21 16 48 H 0.12 3.04 6.30 -2.91 -0.02 3.02 16 Total: -1.00 -62.74 394.24 2.07 -60.67 By element: Atomic # 1 Polarization: 38.47 SS G_CDS: 0.44 Total: 38.91 kcal Atomic # 6 Polarization: -8.69 SS G_CDS: 5.02 Total: -3.68 kcal Atomic # 7 Polarization: -68.76 SS G_CDS: -2.47 Total: -71.23 kcal Atomic # 8 Polarization: -64.34 SS G_CDS: -2.95 Total: -67.29 kcal Atomic # 14 Polarization: 40.59 SS G_CDS: 2.03 Total: 42.61 kcal Total: -62.74 2.07 -60.67 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592838505.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.607 kcal (2) G-P(sol) polarization free energy of solvation -62.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.671 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds