Wall clock time and date at job start Tue Mar 31 2020 17:41:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38149 * 120.02904 * 2 1 4 4 C 1.38267 * 120.04984 * 180.30121 * 3 2 1 5 5 C 1.38263 * 120.11881 * 359.68236 * 4 3 2 6 6 C 1.38144 * 120.05160 * 0.02562 * 5 4 3 7 7 C 1.50696 * 120.02799 * 179.97438 * 6 5 4 8 8 C 1.38732 * 120.02619 * 179.71027 * 2 1 3 9 9 O 1.35904 * 120.05669 * 359.97438 * 8 2 1 10 10 C 1.42903 * 116.99628 * 269.72948 * 9 8 2 11 11 C 1.53000 * 109.46726 * 180.02562 * 10 9 8 12 12 C 1.50703 * 109.46912 * 179.97438 * 11 10 9 13 13 O 1.21278 * 119.99985 * 0.02562 * 12 11 10 14 14 N 1.34777 * 120.00161 * 179.97438 * 12 11 10 15 15 C 1.47425 * 125.64708 * 0.02780 * 14 12 11 16 16 C 1.54903 * 104.83483 * 204.08980 * 15 14 12 17 17 C 1.55161 * 101.57878 * 322.99156 * 16 15 14 18 18 O 1.42900 * 110.71907 * 276.95837 * 17 16 15 19 19 C 1.50704 * 110.71763 * 153.86593 * 17 16 15 20 20 H 1.07999 * 119.99703 * 241.44749 * 19 17 16 21 21 C 1.37871 * 119.99991 * 61.45459 * 19 17 16 22 22 N 1.31517 * 120.00524 * 359.97438 * 21 19 17 23 23 Si 1.86801 * 119.99799 * 179.97438 * 21 19 17 24 24 H 1.48507 * 109.46934 * 89.99908 * 23 21 19 25 25 H 1.48502 * 109.47482 * 209.99743 * 23 21 19 26 26 H 1.48500 * 109.47229 * 329.99978 * 23 21 19 27 27 C 1.47023 * 125.64985 * 179.71557 * 14 12 11 28 28 H 1.08998 * 109.47193 * 270.29563 * 1 2 3 29 29 H 1.09015 * 109.47144 * 30.29183 * 1 2 3 30 30 H 1.08994 * 109.47627 * 150.29052 * 1 2 3 31 31 H 1.07996 * 119.97655 * 359.97438 * 3 2 1 32 32 H 1.08003 * 119.94087 * 179.70063 * 4 3 2 33 33 H 1.07995 * 119.97552 * 180.02562 * 5 4 3 34 34 H 1.08996 * 109.47477 * 270.01872 * 7 6 5 35 35 H 1.09001 * 109.47475 * 30.02053 * 7 6 5 36 36 H 1.09006 * 109.47615 * 150.01994 * 7 6 5 37 37 H 1.09002 * 109.47382 * 59.99787 * 10 9 8 38 38 H 1.09001 * 109.46938 * 299.99774 * 10 9 8 39 39 H 1.09001 * 109.47194 * 299.99575 * 11 10 9 40 40 H 1.08992 * 109.47399 * 59.99748 * 11 10 9 41 41 H 1.09004 * 110.36967 * 322.92794 * 15 14 12 42 42 H 1.09000 * 110.36618 * 85.24872 * 15 14 12 43 43 H 1.09007 * 111.00708 * 81.06298 * 16 15 14 44 44 H 1.08996 * 111.01049 * 204.88100 * 16 15 14 45 45 H 0.96698 * 114.00095 * 298.54936 * 18 17 16 46 46 H 0.96998 * 120.00071 * 180.02562 * 22 21 19 47 47 H 1.08996 * 109.88020 * 298.39977 * 27 14 12 48 48 H 1.09002 * 109.87767 * 59.56505 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1961 0.0000 4 6 3.5810 1.1966 -0.0063 5 6 4.2752 0.0009 -0.0060 6 6 3.5885 -1.1978 0.0001 7 6 4.3457 -2.5007 -0.0001 8 6 2.2012 -1.2011 0.0061 9 8 1.5233 -2.3790 0.0126 10 6 1.2055 -2.9376 1.2889 11 6 0.4487 -4.2531 1.0957 12 6 0.1140 -4.8425 2.4417 13 8 0.4476 -4.2667 3.4557 14 7 -0.5568 -6.0089 2.5188 15 6 -1.0211 -6.8104 1.3719 16 6 -2.2043 -7.6440 1.9236 17 6 -1.7128 -7.9707 3.3586 18 8 -0.8433 -9.1047 3.3493 19 6 -2.8807 -8.2043 4.2820 20 1 -3.0293 -7.5623 5.1377 21 6 -3.7593 -9.2375 4.0344 22 7 -3.5786 -10.0191 2.9922 23 14 -5.2065 -9.5275 5.1794 24 1 -6.3777 -8.7479 4.7040 25 1 -5.5462 -10.9731 5.1917 26 1 -4.8463 -9.0919 6.5526 27 6 -0.9412 -6.6959 3.7605 28 1 -0.3633 0.0053 1.0276 29 1 -0.3634 0.8875 -0.5184 30 1 -0.3634 -0.8925 -0.5093 31 1 1.6584 2.1314 -0.0004 32 1 4.1196 2.1326 -0.0112 33 1 5.3552 0.0040 -0.0105 34 1 4.5239 -2.8172 -1.0278 35 1 5.3000 -2.3665 0.5094 36 1 3.7610 -3.2609 0.5180 37 1 0.5827 -2.2382 1.8468 38 1 2.1255 -3.1260 1.8423 39 1 -0.4713 -4.0651 0.5421 40 1 1.0718 -4.9523 0.5381 41 1 -1.3593 -6.1590 0.5659 42 1 -0.2252 -7.4673 1.0211 43 1 -3.1201 -7.0533 1.9493 44 1 -2.3456 -8.5548 1.3417 45 1 -1.2599 -9.9171 3.0306 46 1 -4.1969 -10.7458 2.8179 47 1 -0.0495 -6.9632 4.3275 48 1 -1.5833 -6.0492 4.3584 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592840288.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:41:48 Heat of formation + Delta-G solvation = -110.108416 kcal Electronic energy + Delta-G solvation = -28480.976786 eV Core-core repulsion = 24500.600214 eV Total energy + Delta-G solvation = -3980.376571 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.44655 -39.56870 -37.69397 -37.15021 -34.37393 -33.80061 -32.26559 -32.24839 -30.95909 -29.64985 -28.38343 -27.21938 -26.85378 -25.44142 -23.67293 -22.19568 -21.86473 -21.10302 -19.76989 -18.77883 -17.97358 -17.25268 -16.80578 -16.47821 -15.69398 -15.56824 -15.30954 -15.00897 -14.83382 -14.43120 -14.23605 -14.10126 -13.62285 -13.48343 -13.31306 -13.20169 -13.01463 -12.89701 -12.45477 -12.13940 -12.12683 -12.03058 -11.87381 -11.74197 -11.55770 -11.42236 -11.39288 -11.25362 -11.15753 -10.91042 -10.66789 -10.51803 -10.15723 -9.91162 -9.56773 -9.37288 -8.81748 -8.71611 -8.69035 -8.27115 -8.08870 -6.32339 -4.39876 0.97696 1.09726 2.95584 3.01416 3.17645 3.25443 3.29862 3.48468 3.90911 4.24246 4.53464 4.59219 4.72424 4.78485 4.94216 4.96291 5.01264 5.04942 5.15730 5.29994 5.34533 5.41071 5.44536 5.48240 5.50872 5.57863 5.59443 5.68090 5.72913 5.75728 5.88275 5.93562 5.97803 6.05043 6.17676 6.21714 6.23081 6.36350 6.40274 6.57422 6.63404 6.85396 6.90882 7.25057 7.30847 7.42443 7.69550 7.97852 8.02532 8.51007 8.62921 9.26263 9.35317 10.75221 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.026435 B = 0.002152 C = 0.002088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1058.942243 B =13006.236853 C =13407.737881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.098 4.098 3 C -0.117 4.117 4 C -0.120 4.120 5 C -0.117 4.117 6 C -0.098 4.098 7 C -0.113 4.113 8 C 0.099 3.901 9 O -0.335 6.335 10 C 0.085 3.915 11 C -0.134 4.134 12 C 0.526 3.474 13 O -0.557 6.557 14 N -0.606 5.606 15 C 0.093 3.907 16 C -0.135 4.135 17 C 0.247 3.753 18 O -0.586 6.586 19 C -0.535 4.535 20 H 0.064 0.936 21 C 0.072 3.928 22 N -0.896 5.896 23 Si 0.903 3.097 24 H -0.279 1.279 25 H -0.284 1.284 26 H -0.272 1.272 27 C 0.123 3.877 28 H 0.070 0.930 29 H 0.066 0.934 30 H 0.074 0.926 31 H 0.125 0.875 32 H 0.123 0.877 33 H 0.125 0.875 34 H 0.073 0.927 35 H 0.065 0.935 36 H 0.070 0.930 37 H 0.062 0.938 38 H 0.062 0.938 39 H 0.101 0.899 40 H 0.100 0.900 41 H 0.062 0.938 42 H 0.064 0.936 43 H 0.067 0.933 44 H 0.089 0.911 45 H 0.382 0.618 46 H 0.268 0.732 47 H 0.061 0.939 48 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.458 16.494 -10.061 21.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.098 4.098 3 C -0.135 4.135 4 C -0.138 4.138 5 C -0.135 4.135 6 C -0.099 4.099 7 C -0.169 4.169 8 C 0.055 3.945 9 O -0.252 6.252 10 C 0.011 3.989 11 C -0.174 4.174 12 C 0.314 3.686 13 O -0.437 6.437 14 N -0.338 5.338 15 C -0.030 4.030 16 C -0.173 4.173 17 C 0.206 3.794 18 O -0.394 6.394 19 C -0.573 4.573 20 H 0.082 0.918 21 C -0.130 4.130 22 N -0.535 5.535 23 Si 0.730 3.270 24 H -0.205 1.205 25 H -0.210 1.210 26 H -0.197 1.197 27 C 0.001 3.999 28 H 0.089 0.911 29 H 0.085 0.915 30 H 0.093 0.907 31 H 0.142 0.858 32 H 0.141 0.859 33 H 0.142 0.858 34 H 0.091 0.909 35 H 0.084 0.916 36 H 0.089 0.911 37 H 0.080 0.920 38 H 0.080 0.920 39 H 0.119 0.881 40 H 0.118 0.882 41 H 0.081 0.919 42 H 0.082 0.918 43 H 0.086 0.914 44 H 0.107 0.893 45 H 0.233 0.767 46 H 0.078 0.922 47 H 0.080 0.920 48 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 10.949 17.017 -9.532 22.368 hybrid contribution -1.214 -0.554 0.381 1.387 sum 9.736 16.464 -9.151 21.203 Atomic orbital electron populations 1.20736 0.90590 1.03233 1.02599 1.20255 0.96881 0.92472 1.00225 1.20931 0.94198 0.97094 1.01260 1.21126 0.94244 0.98021 1.00424 1.20922 0.99796 0.91487 1.01274 1.20255 0.93043 0.96304 1.00269 1.20727 0.99447 0.94079 1.02659 1.18299 0.89337 0.85038 1.01826 1.85908 1.74742 1.34959 1.29608 1.22358 0.99510 0.93883 0.83190 1.21425 1.02714 0.96776 0.96453 1.19826 0.78046 0.80191 0.90517 1.90681 1.54625 1.60844 1.37577 1.48628 1.54379 1.20864 1.09920 1.22563 0.98275 0.93862 0.88289 1.23306 0.94958 0.99343 0.99728 1.19475 0.86490 0.82183 0.91219 1.86133 1.42504 1.21283 1.89527 1.21503 1.09106 1.15110 1.11563 0.91770 1.24984 0.97771 0.95153 0.95122 1.69691 1.38188 1.18467 1.27175 0.86411 0.81942 0.77449 0.81158 1.20474 1.20997 1.19679 1.22089 0.98968 0.93536 0.85309 0.91113 0.91462 0.90657 0.85752 0.85882 0.85753 0.90852 0.91555 0.91129 0.91957 0.91970 0.88109 0.88158 0.91931 0.91751 0.91401 0.89267 0.76739 0.92190 0.92032 0.90914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.10 9.79 36.00 0.35 -0.75 16 2 C -0.10 -1.08 5.89 -104.47 -0.62 -1.69 16 3 C -0.12 -1.09 9.70 -39.60 -0.38 -1.48 16 4 C -0.12 -1.05 10.04 -39.56 -0.40 -1.44 16 5 C -0.12 -1.09 9.70 -39.61 -0.38 -1.47 16 6 C -0.10 -1.08 5.89 -104.47 -0.62 -1.70 16 7 C -0.11 -1.08 9.79 36.00 0.35 -0.73 16 8 C 0.10 1.20 5.67 -39.21 -0.22 0.98 16 9 O -0.33 -4.28 8.32 -19.44 -0.16 -4.44 16 10 C 0.09 1.13 4.98 37.16 0.19 1.31 16 11 C -0.13 -1.79 5.08 -27.88 -0.14 -1.93 16 12 C 0.53 9.43 7.85 -10.98 -0.09 9.35 16 13 O -0.56 -11.72 16.31 5.56 0.09 -11.63 16 14 N -0.61 -11.58 3.33 -170.52 -0.57 -12.14 16 15 C 0.09 1.60 6.68 -2.53 -0.02 1.58 16 16 C -0.13 -2.80 5.47 -24.58 -0.13 -2.94 16 17 C 0.25 5.80 0.85 -89.93 -0.08 5.73 16 18 O -0.59 -14.36 13.07 -35.23 -0.46 -14.82 16 19 C -0.53 -13.74 8.22 -34.44 -0.28 -14.02 16 20 H 0.06 1.66 7.57 -52.49 -0.40 1.27 16 21 C 0.07 1.83 5.28 -17.82 -0.09 1.73 16 22 N -0.90 -22.52 10.67 55.43 0.59 -21.93 16 23 Si 0.90 19.99 29.54 -169.99 -5.02 14.97 16 24 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 25 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 26 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 27 C 0.12 2.71 6.23 -3.06 -0.02 2.69 16 28 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.07 0.52 8.09 -51.92 -0.42 0.10 16 30 H 0.07 0.77 7.53 -51.93 -0.39 0.37 16 31 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 32 H 0.12 0.76 8.06 -52.48 -0.42 0.34 16 33 H 0.12 0.88 8.06 -52.49 -0.42 0.46 16 34 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.07 0.53 8.09 -51.93 -0.42 0.11 16 36 H 0.07 0.75 6.33 -51.93 -0.33 0.42 16 37 H 0.06 0.87 8.10 -51.93 -0.42 0.44 16 38 H 0.06 0.86 7.22 -51.93 -0.37 0.49 16 39 H 0.10 1.21 7.85 -51.93 -0.41 0.80 16 40 H 0.10 1.21 8.14 -51.93 -0.42 0.78 16 41 H 0.06 0.89 7.48 -51.93 -0.39 0.51 16 42 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 43 H 0.07 1.46 8.04 -51.92 -0.42 1.04 16 44 H 0.09 1.93 7.54 -51.93 -0.39 1.54 16 45 H 0.38 9.35 7.46 45.56 0.34 9.69 16 46 H 0.27 6.48 8.31 -40.82 -0.34 6.14 16 47 H 0.06 1.42 8.07 -51.93 -0.42 1.00 16 48 H 0.07 1.64 7.66 -51.93 -0.40 1.25 16 LS Contribution 391.72 15.07 5.90 5.90 Total: -1.00 -28.68 391.72 -9.13 -37.81 By element: Atomic # 1 Polarization: 17.98 SS G_CDS: -6.93 Total: 11.05 kcal Atomic # 6 Polarization: -2.19 SS G_CDS: -2.58 Total: -4.77 kcal Atomic # 7 Polarization: -34.10 SS G_CDS: 0.02 Total: -34.08 kcal Atomic # 8 Polarization: -30.36 SS G_CDS: -0.53 Total: -30.89 kcal Atomic # 14 Polarization: 19.99 SS G_CDS: -5.02 Total: 14.97 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -28.68 -9.13 -37.81 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592840288.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.296 kcal (2) G-P(sol) polarization free energy of solvation -28.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.813 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds