Wall clock time and date at job start Tue Mar 31 2020 17:41:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38149 * 120.02904 * 2 1 4 4 C 1.38267 * 120.04984 * 180.30121 * 3 2 1 5 5 C 1.38263 * 120.11881 * 359.68236 * 4 3 2 6 6 C 1.38144 * 120.05160 * 0.02562 * 5 4 3 7 7 C 1.50696 * 120.02799 * 179.97438 * 6 5 4 8 8 C 1.38732 * 120.02619 * 179.71027 * 2 1 3 9 9 O 1.35904 * 120.05669 * 359.97438 * 8 2 1 10 10 C 1.42903 * 116.99628 * 269.72948 * 9 8 2 11 11 C 1.53000 * 109.46726 * 180.02562 * 10 9 8 12 12 C 1.50703 * 109.46912 * 179.97438 * 11 10 9 13 13 O 1.21278 * 119.99985 * 0.02562 * 12 11 10 14 14 N 1.34777 * 120.00161 * 179.97438 * 12 11 10 15 15 C 1.47425 * 125.64708 * 0.02780 * 14 12 11 16 16 C 1.54903 * 104.83483 * 204.08980 * 15 14 12 17 17 C 1.55161 * 101.57878 * 322.99156 * 16 15 14 18 18 O 1.42900 * 110.71907 * 276.95837 * 17 16 15 19 19 C 1.50704 * 110.71763 * 153.86593 * 17 16 15 20 20 H 1.07999 * 119.99703 * 241.44749 * 19 17 16 21 21 C 1.37871 * 119.99991 * 61.45459 * 19 17 16 22 22 N 1.31517 * 120.00524 * 359.97438 * 21 19 17 23 23 Si 1.86801 * 119.99799 * 179.97438 * 21 19 17 24 24 H 1.48507 * 109.46934 * 89.99908 * 23 21 19 25 25 H 1.48502 * 109.47482 * 209.99743 * 23 21 19 26 26 H 1.48500 * 109.47229 * 329.99978 * 23 21 19 27 27 C 1.47023 * 125.64985 * 179.71557 * 14 12 11 28 28 H 1.08998 * 109.47193 * 270.29563 * 1 2 3 29 29 H 1.09015 * 109.47144 * 30.29183 * 1 2 3 30 30 H 1.08994 * 109.47627 * 150.29052 * 1 2 3 31 31 H 1.07996 * 119.97655 * 359.97438 * 3 2 1 32 32 H 1.08003 * 119.94087 * 179.70063 * 4 3 2 33 33 H 1.07995 * 119.97552 * 180.02562 * 5 4 3 34 34 H 1.08996 * 109.47477 * 270.01872 * 7 6 5 35 35 H 1.09001 * 109.47475 * 30.02053 * 7 6 5 36 36 H 1.09006 * 109.47615 * 150.01994 * 7 6 5 37 37 H 1.09002 * 109.47382 * 59.99787 * 10 9 8 38 38 H 1.09001 * 109.46938 * 299.99774 * 10 9 8 39 39 H 1.09001 * 109.47194 * 299.99575 * 11 10 9 40 40 H 1.08992 * 109.47399 * 59.99748 * 11 10 9 41 41 H 1.09004 * 110.36967 * 322.92794 * 15 14 12 42 42 H 1.09000 * 110.36618 * 85.24872 * 15 14 12 43 43 H 1.09007 * 111.00708 * 81.06298 * 16 15 14 44 44 H 1.08996 * 111.01049 * 204.88100 * 16 15 14 45 45 H 0.96698 * 114.00095 * 298.54936 * 18 17 16 46 46 H 0.96998 * 120.00071 * 180.02562 * 22 21 19 47 47 H 1.08996 * 109.88020 * 298.39977 * 27 14 12 48 48 H 1.09002 * 109.87767 * 59.56505 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1961 0.0000 4 6 3.5810 1.1966 -0.0063 5 6 4.2752 0.0009 -0.0060 6 6 3.5885 -1.1978 0.0001 7 6 4.3457 -2.5007 -0.0001 8 6 2.2012 -1.2011 0.0061 9 8 1.5233 -2.3790 0.0126 10 6 1.2055 -2.9376 1.2889 11 6 0.4487 -4.2531 1.0957 12 6 0.1140 -4.8425 2.4417 13 8 0.4476 -4.2667 3.4557 14 7 -0.5568 -6.0089 2.5188 15 6 -1.0211 -6.8104 1.3719 16 6 -2.2043 -7.6440 1.9236 17 6 -1.7128 -7.9707 3.3586 18 8 -0.8433 -9.1047 3.3493 19 6 -2.8807 -8.2043 4.2820 20 1 -3.0293 -7.5623 5.1377 21 6 -3.7593 -9.2375 4.0344 22 7 -3.5786 -10.0191 2.9922 23 14 -5.2065 -9.5275 5.1794 24 1 -6.3777 -8.7479 4.7040 25 1 -5.5462 -10.9731 5.1917 26 1 -4.8463 -9.0919 6.5526 27 6 -0.9412 -6.6959 3.7605 28 1 -0.3633 0.0053 1.0276 29 1 -0.3634 0.8875 -0.5184 30 1 -0.3634 -0.8925 -0.5093 31 1 1.6584 2.1314 -0.0004 32 1 4.1196 2.1326 -0.0112 33 1 5.3552 0.0040 -0.0105 34 1 4.5239 -2.8172 -1.0278 35 1 5.3000 -2.3665 0.5094 36 1 3.7610 -3.2609 0.5180 37 1 0.5827 -2.2382 1.8468 38 1 2.1255 -3.1260 1.8423 39 1 -0.4713 -4.0651 0.5421 40 1 1.0718 -4.9523 0.5381 41 1 -1.3593 -6.1590 0.5659 42 1 -0.2252 -7.4673 1.0211 43 1 -3.1201 -7.0533 1.9493 44 1 -2.3456 -8.5548 1.3417 45 1 -1.2599 -9.9171 3.0306 46 1 -4.1969 -10.7458 2.8179 47 1 -0.0495 -6.9632 4.3275 48 1 -1.5833 -6.0492 4.3584 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592840288.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:41:47 Heat of formation + Delta-G solvation = -126.672555 kcal Electronic energy + Delta-G solvation = -28481.695061 eV Core-core repulsion = 24500.600214 eV Total energy + Delta-G solvation = -3981.094846 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.37765 -40.96511 -39.13683 -38.25280 -36.12364 -34.52869 -34.21205 -33.35038 -31.87612 -31.20843 -30.03737 -28.09690 -27.55354 -27.12694 -25.00994 -23.62467 -22.68701 -21.84234 -21.54360 -20.21905 -19.21869 -18.88970 -17.81915 -17.73258 -17.06105 -16.91011 -16.55617 -16.38478 -15.95753 -15.92300 -15.65674 -15.01204 -14.83671 -14.80523 -14.38498 -14.08543 -13.92454 -13.88537 -13.84967 -13.58808 -13.40049 -13.25875 -13.13051 -13.00789 -12.85955 -12.80006 -12.65473 -12.46074 -12.43393 -12.28750 -12.11033 -12.00125 -11.95319 -11.28710 -11.01479 -10.83889 -10.63488 -10.14882 -9.67016 -9.54190 -9.47671 -8.25188 -6.39289 0.19787 0.36719 1.40646 1.44215 1.52467 1.53143 1.81977 2.38164 2.49891 2.95067 3.00344 3.53611 3.78791 3.82741 3.86349 3.93232 3.98849 4.01662 4.09008 4.28622 4.32686 4.37782 4.42267 4.46581 4.54897 4.57067 4.60390 4.68593 4.72179 4.73660 4.75906 4.77945 4.86692 4.91373 4.91594 5.16727 5.18721 5.22794 5.31826 5.46338 5.51163 5.51413 5.54044 5.61166 5.76189 5.85591 6.07552 6.51496 6.55583 6.64583 7.04583 7.30705 7.40104 8.80678 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.026435 B = 0.002152 C = 0.002088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1058.942243 B =13006.236853 C =13407.737881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.114 4.114 3 C -0.123 4.123 4 C -0.117 4.117 5 C -0.123 4.123 6 C -0.114 4.114 7 C -0.111 4.111 8 C 0.066 3.934 9 O -0.335 6.335 10 C 0.093 3.907 11 C -0.120 4.120 12 C 0.525 3.475 13 O -0.593 6.593 14 N -0.609 5.609 15 C 0.101 3.899 16 C -0.126 4.126 17 C 0.234 3.766 18 O -0.593 6.593 19 C -0.563 4.563 20 H 0.050 0.950 21 C 0.038 3.962 22 N -0.904 5.904 23 Si 0.957 3.043 24 H -0.273 1.273 25 H -0.278 1.278 26 H -0.278 1.278 27 C 0.129 3.871 28 H 0.067 0.933 29 H 0.085 0.915 30 H 0.065 0.935 31 H 0.147 0.853 32 H 0.152 0.848 33 H 0.147 0.853 34 H 0.080 0.920 35 H 0.080 0.920 36 H 0.055 0.945 37 H 0.050 0.950 38 H 0.050 0.950 39 H 0.124 0.876 40 H 0.122 0.878 41 H 0.104 0.896 42 H 0.075 0.925 43 H 0.057 0.943 44 H 0.081 0.919 45 H 0.380 0.620 46 H 0.272 0.728 47 H 0.043 0.957 48 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.874 17.898 -11.744 24.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.114 4.114 3 C -0.141 4.141 4 C -0.135 4.135 5 C -0.140 4.140 6 C -0.115 4.115 7 C -0.168 4.168 8 C 0.022 3.978 9 O -0.252 6.252 10 C 0.018 3.982 11 C -0.159 4.159 12 C 0.315 3.685 13 O -0.475 6.475 14 N -0.341 5.341 15 C -0.020 4.020 16 C -0.165 4.165 17 C 0.194 3.806 18 O -0.402 6.402 19 C -0.601 4.601 20 H 0.068 0.932 21 C -0.163 4.163 22 N -0.543 5.543 23 Si 0.783 3.217 24 H -0.199 1.199 25 H -0.203 1.203 26 H -0.203 1.203 27 C 0.006 3.994 28 H 0.085 0.915 29 H 0.104 0.896 30 H 0.084 0.916 31 H 0.164 0.836 32 H 0.170 0.830 33 H 0.165 0.835 34 H 0.098 0.902 35 H 0.099 0.901 36 H 0.074 0.926 37 H 0.069 0.931 38 H 0.068 0.932 39 H 0.142 0.858 40 H 0.140 0.860 41 H 0.122 0.878 42 H 0.094 0.906 43 H 0.076 0.924 44 H 0.099 0.901 45 H 0.230 0.770 46 H 0.081 0.919 47 H 0.062 0.938 48 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 11.370 18.425 -11.246 24.398 hybrid contribution -1.284 -0.928 0.930 1.837 sum 10.086 17.497 -10.316 22.678 Atomic orbital electron populations 1.20734 0.90042 1.03691 1.02487 1.20518 0.97610 0.92811 1.00488 1.21265 0.94821 0.97382 1.00591 1.21527 0.94224 0.99039 0.98726 1.21255 1.01046 0.91137 1.00602 1.20521 0.92922 0.97500 1.00508 1.20736 0.99733 0.93263 1.03057 1.18616 0.90088 0.85105 1.03960 1.85893 1.74994 1.35571 1.28790 1.22154 0.98709 0.93672 0.83640 1.21359 1.04140 0.96853 0.93573 1.20619 0.76750 0.79256 0.91876 1.90664 1.55818 1.61624 1.39424 1.48673 1.54865 1.21383 1.09205 1.22600 0.97028 0.94128 0.88248 1.23083 0.95975 0.99465 0.97936 1.19609 0.86112 0.82118 0.92741 1.86119 1.42817 1.21543 1.89696 1.21709 1.10595 1.15761 1.12033 0.93208 1.25561 0.99584 0.94863 0.96339 1.69742 1.38613 1.18363 1.27554 0.85572 0.79462 0.77485 0.79163 1.19893 1.20337 1.20349 1.21791 0.97739 0.93246 0.86667 0.91479 0.89606 0.91574 0.83561 0.83030 0.83549 0.90190 0.90107 0.92558 0.93124 0.93155 0.85808 0.85990 0.87812 0.90639 0.92393 0.90084 0.77015 0.91870 0.93822 0.92275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.06 9.79 71.23 0.70 -1.36 16 2 C -0.11 -2.39 5.89 -19.77 -0.12 -2.50 16 3 C -0.12 -2.04 9.70 22.26 0.22 -1.82 16 4 C -0.12 -1.74 10.04 22.28 0.22 -1.51 16 5 C -0.12 -2.03 9.70 22.25 0.22 -1.82 16 6 C -0.11 -2.39 5.89 -19.77 -0.12 -2.51 16 7 C -0.11 -2.03 9.79 71.23 0.70 -1.33 16 8 C 0.07 1.56 5.67 22.51 0.13 1.69 16 9 O -0.33 -8.34 8.32 -92.47 -0.77 -9.11 16 10 C 0.09 2.43 4.98 71.98 0.36 2.79 16 11 C -0.12 -2.99 5.08 29.85 0.15 -2.84 16 12 C 0.52 18.49 7.85 87.66 0.69 19.18 16 13 O -0.59 -25.33 16.31 -3.02 -0.05 -25.38 16 14 N -0.61 -22.91 3.33 -811.79 -2.70 -25.61 16 15 C 0.10 3.30 6.68 86.85 0.58 3.88 16 16 C -0.13 -5.18 5.47 31.99 0.17 -5.00 16 17 C 0.23 11.19 0.85 -10.35 -0.01 11.18 16 18 O -0.59 -29.51 13.07 -148.98 -1.95 -31.46 16 19 C -0.56 -29.54 8.22 25.60 0.21 -29.33 16 20 H 0.05 2.68 7.57 -2.91 -0.02 2.65 16 21 C 0.04 1.93 5.28 84.65 0.45 2.38 16 22 N -0.90 -45.27 10.67 21.45 0.23 -45.04 16 23 Si 0.96 41.02 29.54 68.60 2.03 43.04 16 24 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 25 H -0.28 -11.58 7.11 99.48 0.71 -10.87 16 26 H -0.28 -12.12 7.11 99.48 0.71 -11.42 16 27 C 0.13 5.84 6.23 86.73 0.54 6.38 16 28 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 29 H 0.09 1.18 8.09 -2.38 -0.02 1.16 16 30 H 0.07 1.30 7.53 -2.39 -0.02 1.28 16 31 H 0.15 1.69 8.06 -2.91 -0.02 1.66 16 32 H 0.15 1.32 8.06 -2.91 -0.02 1.30 16 33 H 0.15 1.68 8.06 -2.91 -0.02 1.66 16 34 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 35 H 0.08 1.18 8.09 -2.39 -0.02 1.16 16 36 H 0.06 1.17 6.33 -2.38 -0.02 1.16 16 37 H 0.05 1.42 8.10 -2.39 -0.02 1.40 16 38 H 0.05 1.42 7.22 -2.39 -0.02 1.40 16 39 H 0.12 2.58 7.85 -2.39 -0.02 2.56 16 40 H 0.12 2.59 8.14 -2.39 -0.02 2.57 16 41 H 0.10 2.57 7.48 -2.39 -0.02 2.55 16 42 H 0.08 2.33 8.14 -2.39 -0.02 2.32 16 43 H 0.06 2.47 8.04 -2.38 -0.02 2.45 16 44 H 0.08 3.46 7.54 -2.39 -0.02 3.44 16 45 H 0.38 18.84 7.46 -74.06 -0.55 18.29 16 46 H 0.27 12.96 8.31 -92.71 -0.77 12.19 16 47 H 0.04 2.09 8.07 -2.39 -0.02 2.07 16 48 H 0.06 2.79 7.66 -2.39 -0.02 2.77 16 Total: -1.00 -62.85 391.72 2.28 -60.56 By element: Atomic # 1 Polarization: 35.14 SS G_CDS: 0.41 Total: 35.54 kcal Atomic # 6 Polarization: -7.64 SS G_CDS: 5.09 Total: -2.55 kcal Atomic # 7 Polarization: -68.18 SS G_CDS: -2.47 Total: -70.65 kcal Atomic # 8 Polarization: -63.18 SS G_CDS: -2.77 Total: -65.95 kcal Atomic # 14 Polarization: 41.02 SS G_CDS: 2.03 Total: 43.04 kcal Total: -62.85 2.28 -60.56 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592840288.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.109 kcal (2) G-P(sol) polarization free energy of solvation -62.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.563 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds