Wall clock time and date at job start Tue Mar 31 2020 18:36:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35903 * 117.00083 * 2 1 4 4 C 1.38754 * 120.05271 * 0.02562 * 3 2 1 5 5 C 1.38116 * 119.94274 * 180.02562 * 4 3 2 6 6 C 1.38292 * 120.05825 * 359.96471 * 5 4 3 7 7 C 1.38251 * 120.10919 * 0.03066 * 6 5 4 8 8 C 1.38165 * 120.05404 * 359.97438 * 7 6 5 9 9 C 1.50702 * 120.02435 * 179.97438 * 8 7 6 10 10 C 1.53001 * 109.46518 * 114.97316 * 9 8 7 11 11 C 1.52996 * 109.46989 * 234.97335 * 9 8 7 12 12 C 1.50700 * 109.47337 * 354.97531 * 9 8 7 13 13 O 1.21275 * 119.99859 * 115.87994 * 12 9 8 14 14 N 1.34775 * 120.00138 * 295.88438 * 12 9 8 15 15 C 1.47429 * 125.64336 * 354.85757 * 14 12 9 16 16 C 1.55130 * 104.72169 * 155.81963 * 15 14 12 17 17 C 1.55157 * 101.48938 * 37.28824 * 16 15 14 18 18 O 1.42898 * 110.86839 * 82.76585 * 17 16 15 19 19 C 1.50699 * 110.72290 * 205.97132 * 17 16 15 20 20 H 1.08001 * 119.99642 * 113.52526 * 19 17 16 21 21 C 1.37871 * 119.99799 * 293.52248 * 19 17 16 22 22 N 1.31512 * 120.00431 * 359.97438 * 21 19 17 23 23 Si 1.86806 * 119.99705 * 179.97438 * 21 19 17 24 24 H 1.48506 * 109.46853 * 90.00096 * 23 21 19 25 25 H 1.48495 * 109.47266 * 210.00166 * 23 21 19 26 26 H 1.48505 * 109.47061 * 330.00445 * 23 21 19 27 27 C 1.47019 * 125.65339 * 175.15979 * 14 12 9 28 28 H 1.08996 * 109.46736 * 299.99296 * 1 2 3 29 29 H 1.08991 * 109.47301 * 60.00101 * 1 2 3 30 30 H 1.09003 * 109.46647 * 179.97438 * 1 2 3 31 31 H 1.08001 * 120.02444 * 359.97438 * 4 3 2 32 32 H 1.08002 * 119.97213 * 180.24974 * 5 4 3 33 33 H 1.07997 * 119.94582 * 180.02562 * 6 5 4 34 34 H 1.07996 * 119.96935 * 179.97438 * 7 6 5 35 35 H 1.09001 * 109.47351 * 60.00264 * 10 9 8 36 36 H 1.09007 * 109.46851 * 179.97438 * 10 9 8 37 37 H 1.08993 * 109.47477 * 299.99784 * 10 9 8 38 38 H 1.08997 * 109.47693 * 50.42727 * 11 9 8 39 39 H 1.09006 * 109.46810 * 170.42779 * 11 9 8 40 40 H 1.09000 * 109.47085 * 290.42182 * 11 9 8 41 41 H 1.08999 * 110.36431 * 274.74561 * 15 14 12 42 42 H 1.08997 * 110.36925 * 37.06826 * 15 14 12 43 43 H 1.09009 * 111.19026 * 279.18688 * 16 15 14 44 44 H 1.08996 * 110.94473 * 155.28713 * 16 15 14 45 45 H 0.96703 * 113.99751 * 66.39418 * 18 17 16 46 46 H 0.96999 * 120.00050 * 179.97438 * 22 21 19 47 47 H 1.08998 * 109.88335 * 300.44453 * 27 14 12 48 48 H 1.09001 * 109.87554 * 61.60741 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2914 2.3753 0.0005 5 6 1.9208 3.6047 0.0000 6 6 3.3019 3.6758 -0.0003 7 6 4.0560 2.5171 -0.0008 8 6 3.4311 1.2848 -0.0003 9 6 4.2538 0.0222 -0.0014 10 6 4.0232 -0.7377 1.3064 11 6 3.8373 -0.8569 -1.1823 12 6 5.7137 0.3739 -0.1273 13 8 6.4799 0.1152 0.7765 14 7 6.1680 0.9760 -1.2442 15 6 5.3742 1.2500 -2.4560 16 6 6.0969 2.4403 -3.1398 17 6 7.5849 2.0981 -2.8640 18 8 8.0789 1.1633 -3.8253 19 6 8.4269 3.3479 -2.8568 20 1 8.8964 3.6774 -1.9417 21 6 8.5980 4.0705 -4.0185 22 7 8.0268 3.6690 -5.1329 23 14 9.6412 5.6202 -4.0094 24 1 11.0516 5.2691 -4.3138 25 1 9.1334 6.5648 -5.0365 26 1 9.5678 6.2584 -2.6705 27 6 7.5386 1.4628 -1.4584 28 1 -0.3632 0.5137 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 0.2128 2.3202 0.0005 32 1 1.3339 4.5113 0.0045 33 1 3.7921 4.6381 -0.0003 34 1 5.1344 2.5753 -0.0015 35 1 2.9672 -0.9922 1.3975 36 1 4.6179 -1.6513 1.3055 37 1 4.3199 -0.1115 2.1477 38 1 3.8393 -0.2627 -2.0961 39 1 4.5399 -1.6839 -1.2852 40 1 2.8360 -1.2504 -1.0070 41 1 5.3695 0.3790 -3.1113 42 1 4.3555 1.5290 -2.1872 43 1 5.8213 3.3875 -2.6761 44 1 5.8919 2.4576 -4.2102 45 1 8.1277 1.5135 -4.7254 46 1 8.1468 4.1776 -5.9501 47 1 7.7885 2.2102 -0.7054 48 1 8.2402 0.6303 -1.4046 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592840752.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:36:44 Heat of formation + Delta-G solvation = -87.916535 kcal Electronic energy + Delta-G solvation = -30933.595573 eV Core-core repulsion = 26954.181314 eV Total energy + Delta-G solvation = -3979.414259 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.99551 -39.43440 -37.46673 -37.22152 -35.00464 -34.25383 -32.14942 -30.36951 -29.81958 -29.61099 -28.42582 -27.46056 -26.86949 -25.34302 -23.59603 -22.60749 -22.03391 -20.90537 -19.60019 -18.57622 -18.07615 -17.21499 -16.59823 -16.19064 -15.87369 -15.49164 -15.24304 -14.97143 -14.64778 -14.45705 -14.16210 -13.96415 -13.61818 -13.36227 -13.16834 -12.98913 -12.48003 -12.31108 -12.23995 -11.99406 -11.98386 -11.82398 -11.63279 -11.56917 -11.40460 -11.32848 -11.18904 -11.09070 -11.00961 -10.68189 -10.61363 -10.50302 -10.45360 -10.10976 -9.41268 -9.18203 -8.79577 -8.65703 -8.19726 -8.13433 -7.94838 -6.29972 -4.37126 1.32445 1.46107 3.06661 3.16771 3.19591 3.27032 3.30186 3.57732 3.76816 4.26106 4.62457 4.69487 4.83372 4.94353 4.96929 4.98473 5.12850 5.21020 5.25696 5.28469 5.36772 5.46167 5.61785 5.72133 5.79128 5.84738 5.90869 5.94821 5.98647 6.02296 6.07378 6.10168 6.23918 6.29763 6.40660 6.44979 6.48063 6.49850 6.63286 6.71085 6.80421 6.93563 7.01060 7.31657 7.32653 7.34950 7.73272 8.00591 8.15114 8.63330 8.68224 9.31437 9.46285 10.77788 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.015994 B = 0.003959 C = 0.003603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1750.214095 B = 7070.331002 C = 7769.889912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.308 6.308 3 C 0.134 3.866 4 C -0.210 4.210 5 C -0.084 4.084 6 C -0.148 4.148 7 C -0.072 4.072 8 C -0.100 4.100 9 C -0.025 4.025 10 C -0.120 4.120 11 C -0.149 4.149 12 C 0.532 3.468 13 O -0.551 6.551 14 N -0.605 5.605 15 C 0.093 3.907 16 C -0.135 4.135 17 C 0.249 3.751 18 O -0.587 6.587 19 C -0.534 4.534 20 H 0.064 0.936 21 C 0.073 3.927 22 N -0.898 5.898 23 Si 0.902 3.098 24 H -0.278 1.278 25 H -0.285 1.285 26 H -0.272 1.272 27 C 0.121 3.879 28 H 0.053 0.947 29 H 0.054 0.946 30 H 0.097 0.903 31 H 0.126 0.874 32 H 0.122 0.878 33 H 0.126 0.874 34 H 0.135 0.865 35 H 0.067 0.933 36 H 0.061 0.939 37 H 0.058 0.942 38 H 0.069 0.931 39 H 0.058 0.942 40 H 0.078 0.922 41 H 0.062 0.938 42 H 0.067 0.933 43 H 0.067 0.933 44 H 0.083 0.917 45 H 0.386 0.614 46 H 0.269 0.731 47 H 0.070 0.930 48 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.921 -3.697 6.699 18.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.221 6.221 3 C 0.089 3.911 4 C -0.229 4.229 5 C -0.102 4.102 6 C -0.166 4.166 7 C -0.091 4.091 8 C -0.101 4.101 9 C -0.028 4.028 10 C -0.178 4.178 11 C -0.206 4.206 12 C 0.320 3.680 13 O -0.429 6.429 14 N -0.337 5.337 15 C -0.029 4.029 16 C -0.174 4.174 17 C 0.208 3.792 18 O -0.397 6.397 19 C -0.573 4.573 20 H 0.082 0.918 21 C -0.129 4.129 22 N -0.538 5.538 23 Si 0.729 3.271 24 H -0.204 1.204 25 H -0.211 1.211 26 H -0.197 1.197 27 C -0.001 4.001 28 H 0.071 0.929 29 H 0.072 0.928 30 H 0.116 0.884 31 H 0.144 0.856 32 H 0.140 0.860 33 H 0.144 0.856 34 H 0.153 0.847 35 H 0.086 0.914 36 H 0.080 0.920 37 H 0.077 0.923 38 H 0.088 0.912 39 H 0.077 0.923 40 H 0.097 0.903 41 H 0.080 0.920 42 H 0.086 0.914 43 H 0.085 0.915 44 H 0.101 0.899 45 H 0.238 0.762 46 H 0.079 0.921 47 H 0.088 0.912 48 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -16.437 -4.407 7.573 18.626 hybrid contribution 0.212 1.522 -0.733 1.702 sum -16.225 -2.885 6.840 17.842 Atomic orbital electron populations 1.23037 0.79132 1.03698 1.01187 1.86151 1.20676 1.26609 1.88664 1.18653 0.91146 0.84260 0.97020 1.21131 0.99676 0.92307 1.09752 1.20922 0.94642 0.96869 0.97768 1.21084 0.93751 0.98576 1.03193 1.21259 1.00957 0.91029 0.95808 1.18905 0.90197 0.94523 1.06442 1.19537 0.90714 0.93766 0.98798 1.21628 1.01680 0.99809 0.94659 1.22129 1.02420 0.99240 0.96792 1.20005 0.89614 0.77162 0.81203 1.90650 1.58183 1.54345 1.39751 1.48639 1.13179 1.57370 1.14518 1.22741 0.94955 0.99317 0.85931 1.23344 0.98248 0.95074 1.00750 1.19420 0.89605 0.86455 0.83690 1.86101 1.88018 1.42923 1.22644 1.21554 1.31460 1.08115 0.96150 0.91755 1.24970 0.94899 0.97820 0.95233 1.69573 1.43706 1.40380 1.00097 0.86428 0.80431 0.82210 0.77990 1.20396 1.21052 1.19717 1.22086 0.81599 0.98070 0.98332 0.92886 0.92762 0.88440 0.85630 0.85957 0.85636 0.84703 0.91366 0.92028 0.92266 0.91219 0.92304 0.90327 0.91976 0.91450 0.91477 0.89869 0.76239 0.92120 0.91177 0.92115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.17 9.81 101.05 0.99 1.17 16 2 O -0.31 -3.40 6.32 -19.44 -0.12 -3.52 16 3 C 0.13 1.71 6.28 -39.22 -0.25 1.46 16 4 C -0.21 -2.35 9.04 -39.44 -0.36 -2.70 16 5 C -0.08 -0.96 10.04 -39.61 -0.40 -1.36 16 6 C -0.15 -1.99 10.04 -39.56 -0.40 -2.39 16 7 C -0.07 -1.13 7.42 -39.60 -0.29 -1.42 16 8 C -0.10 -1.48 3.49 -104.47 -0.36 -1.84 16 9 C -0.03 -0.39 0.48 -156.81 -0.08 -0.47 16 10 C -0.12 -1.74 7.59 37.16 0.28 -1.46 16 11 C -0.15 -2.09 7.54 37.16 0.28 -1.81 16 12 C 0.53 10.30 5.13 -10.99 -0.06 10.24 16 13 O -0.55 -12.30 16.32 5.56 0.09 -12.21 16 14 N -0.60 -12.01 2.27 -170.38 -0.39 -12.39 16 15 C 0.09 1.72 4.42 -2.41 -0.01 1.71 16 16 C -0.14 -2.89 5.69 -24.46 -0.14 -3.03 16 17 C 0.25 5.95 0.85 -89.94 -0.08 5.87 16 18 O -0.59 -14.83 13.09 -35.23 -0.46 -15.29 16 19 C -0.53 -13.81 8.21 -34.44 -0.28 -14.10 16 20 H 0.06 1.67 7.53 -52.49 -0.40 1.27 16 21 C 0.07 1.85 5.28 -17.82 -0.09 1.76 16 22 N -0.90 -22.84 10.70 55.43 0.59 -22.25 16 23 Si 0.90 20.07 29.54 -169.99 -5.02 15.05 16 24 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 25 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 26 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 27 C 0.12 2.73 6.22 -3.07 -0.02 2.71 16 28 H 0.05 0.33 7.66 -51.93 -0.40 -0.07 16 29 H 0.05 0.34 7.66 -51.93 -0.40 -0.05 16 30 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.13 1.07 6.30 -52.49 -0.33 0.74 16 32 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16 33 H 0.13 1.54 8.06 -52.49 -0.42 1.12 16 34 H 0.14 2.41 5.80 -52.49 -0.30 2.10 16 35 H 0.07 0.86 6.56 -51.93 -0.34 0.52 16 36 H 0.06 0.90 8.14 -51.92 -0.42 0.47 16 37 H 0.06 0.91 8.05 -51.93 -0.42 0.49 16 38 H 0.07 1.00 4.77 -51.93 -0.25 0.75 16 39 H 0.06 0.84 8.11 -51.93 -0.42 0.41 16 40 H 0.08 0.98 6.11 -51.93 -0.32 0.66 16 41 H 0.06 1.15 7.54 -51.93 -0.39 0.76 16 42 H 0.07 1.14 4.61 -51.93 -0.24 0.90 16 43 H 0.07 1.46 8.04 -51.92 -0.42 1.04 16 44 H 0.08 1.86 7.77 -51.93 -0.40 1.46 16 45 H 0.39 9.83 6.98 45.56 0.32 10.15 16 46 H 0.27 6.57 8.31 -40.82 -0.34 6.23 16 47 H 0.07 1.59 7.63 -51.93 -0.40 1.19 16 48 H 0.06 1.44 8.07 -51.93 -0.42 1.02 16 LS Contribution 367.02 15.07 5.53 5.53 Total: -1.00 -28.82 367.02 -7.38 -36.20 By element: Atomic # 1 Polarization: 20.89 SS G_CDS: -6.35 Total: 14.55 kcal Atomic # 6 Polarization: -4.40 SS G_CDS: -1.26 Total: -5.66 kcal Atomic # 7 Polarization: -34.85 SS G_CDS: 0.21 Total: -34.64 kcal Atomic # 8 Polarization: -30.53 SS G_CDS: -0.49 Total: -31.02 kcal Atomic # 14 Polarization: 20.07 SS G_CDS: -5.02 Total: 15.05 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -28.82 -7.38 -36.20 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592840752.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.717 kcal (2) G-P(sol) polarization free energy of solvation -28.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.200 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds