Wall clock time and date at job start Tue Mar 31 2020 18:36:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35903 * 117.00083 * 2 1 4 4 C 1.38754 * 120.05271 * 0.02562 * 3 2 1 5 5 C 1.38116 * 119.94274 * 180.02562 * 4 3 2 6 6 C 1.38292 * 120.05825 * 359.96471 * 5 4 3 7 7 C 1.38251 * 120.10919 * 0.03066 * 6 5 4 8 8 C 1.38165 * 120.05404 * 359.97438 * 7 6 5 9 9 C 1.50702 * 120.02435 * 179.97438 * 8 7 6 10 10 C 1.53001 * 109.46518 * 114.97316 * 9 8 7 11 11 C 1.52996 * 109.46989 * 234.97335 * 9 8 7 12 12 C 1.50700 * 109.47337 * 354.97531 * 9 8 7 13 13 O 1.21275 * 119.99859 * 115.87994 * 12 9 8 14 14 N 1.34775 * 120.00138 * 295.88438 * 12 9 8 15 15 C 1.47429 * 125.64336 * 354.85757 * 14 12 9 16 16 C 1.55130 * 104.72169 * 155.81963 * 15 14 12 17 17 C 1.55157 * 101.48938 * 37.28824 * 16 15 14 18 18 O 1.42898 * 110.86839 * 82.76585 * 17 16 15 19 19 C 1.50699 * 110.72290 * 205.97132 * 17 16 15 20 20 H 1.08001 * 119.99642 * 113.52526 * 19 17 16 21 21 C 1.37871 * 119.99799 * 293.52248 * 19 17 16 22 22 N 1.31512 * 120.00431 * 359.97438 * 21 19 17 23 23 Si 1.86806 * 119.99705 * 179.97438 * 21 19 17 24 24 H 1.48506 * 109.46853 * 90.00096 * 23 21 19 25 25 H 1.48495 * 109.47266 * 210.00166 * 23 21 19 26 26 H 1.48505 * 109.47061 * 330.00445 * 23 21 19 27 27 C 1.47019 * 125.65339 * 175.15979 * 14 12 9 28 28 H 1.08996 * 109.46736 * 299.99296 * 1 2 3 29 29 H 1.08991 * 109.47301 * 60.00101 * 1 2 3 30 30 H 1.09003 * 109.46647 * 179.97438 * 1 2 3 31 31 H 1.08001 * 120.02444 * 359.97438 * 4 3 2 32 32 H 1.08002 * 119.97213 * 180.24974 * 5 4 3 33 33 H 1.07997 * 119.94582 * 180.02562 * 6 5 4 34 34 H 1.07996 * 119.96935 * 179.97438 * 7 6 5 35 35 H 1.09001 * 109.47351 * 60.00264 * 10 9 8 36 36 H 1.09007 * 109.46851 * 179.97438 * 10 9 8 37 37 H 1.08993 * 109.47477 * 299.99784 * 10 9 8 38 38 H 1.08997 * 109.47693 * 50.42727 * 11 9 8 39 39 H 1.09006 * 109.46810 * 170.42779 * 11 9 8 40 40 H 1.09000 * 109.47085 * 290.42182 * 11 9 8 41 41 H 1.08999 * 110.36431 * 274.74561 * 15 14 12 42 42 H 1.08997 * 110.36925 * 37.06826 * 15 14 12 43 43 H 1.09009 * 111.19026 * 279.18688 * 16 15 14 44 44 H 1.08996 * 110.94473 * 155.28713 * 16 15 14 45 45 H 0.96703 * 113.99751 * 66.39418 * 18 17 16 46 46 H 0.96999 * 120.00050 * 179.97438 * 22 21 19 47 47 H 1.08998 * 109.88335 * 300.44453 * 27 14 12 48 48 H 1.09001 * 109.87554 * 61.60741 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2914 2.3753 0.0005 5 6 1.9208 3.6047 0.0000 6 6 3.3019 3.6758 -0.0003 7 6 4.0560 2.5171 -0.0008 8 6 3.4311 1.2848 -0.0003 9 6 4.2538 0.0222 -0.0014 10 6 4.0232 -0.7377 1.3064 11 6 3.8373 -0.8569 -1.1823 12 6 5.7137 0.3739 -0.1273 13 8 6.4799 0.1152 0.7765 14 7 6.1680 0.9760 -1.2442 15 6 5.3742 1.2500 -2.4560 16 6 6.0969 2.4403 -3.1398 17 6 7.5849 2.0981 -2.8640 18 8 8.0789 1.1633 -3.8253 19 6 8.4269 3.3479 -2.8568 20 1 8.8964 3.6774 -1.9417 21 6 8.5980 4.0705 -4.0185 22 7 8.0268 3.6690 -5.1329 23 14 9.6412 5.6202 -4.0094 24 1 11.0516 5.2691 -4.3138 25 1 9.1334 6.5648 -5.0365 26 1 9.5678 6.2584 -2.6705 27 6 7.5386 1.4628 -1.4584 28 1 -0.3632 0.5137 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 0.2128 2.3202 0.0005 32 1 1.3339 4.5113 0.0045 33 1 3.7921 4.6381 -0.0003 34 1 5.1344 2.5753 -0.0015 35 1 2.9672 -0.9922 1.3975 36 1 4.6179 -1.6513 1.3055 37 1 4.3199 -0.1115 2.1477 38 1 3.8393 -0.2627 -2.0961 39 1 4.5399 -1.6839 -1.2852 40 1 2.8360 -1.2504 -1.0070 41 1 5.3695 0.3790 -3.1113 42 1 4.3555 1.5290 -2.1872 43 1 5.8213 3.3875 -2.6761 44 1 5.8919 2.4576 -4.2102 45 1 8.1277 1.5135 -4.7254 46 1 8.1468 4.1776 -5.9501 47 1 7.7885 2.2102 -0.7054 48 1 8.2402 0.6303 -1.4046 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592840752.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:36:43 Heat of formation + Delta-G solvation = -105.257249 kcal Electronic energy + Delta-G solvation = -30934.347523 eV Core-core repulsion = 26954.181314 eV Total energy + Delta-G solvation = -3980.166209 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.21986 -40.68072 -39.13335 -38.23973 -36.37776 -35.96705 -34.15330 -31.52541 -31.29611 -30.67813 -30.13811 -28.18700 -28.08345 -27.10255 -25.04701 -23.82305 -23.13104 -22.23351 -21.40208 -20.00525 -19.34197 -18.90526 -17.93263 -17.23532 -16.97566 -16.90385 -16.70393 -16.54069 -16.07414 -15.75369 -15.50965 -15.30718 -14.84971 -14.61886 -14.55382 -14.43772 -13.94865 -13.74272 -13.45514 -13.29826 -13.26720 -13.21686 -13.14366 -13.03803 -12.80473 -12.70032 -12.51259 -12.46814 -12.28903 -12.26514 -12.02070 -11.96894 -11.85057 -11.56824 -11.29338 -10.78502 -10.60161 -10.15231 -9.78939 -9.63257 -9.07591 -8.25907 -6.40069 0.33266 0.49224 1.41013 1.44198 1.52735 1.53125 1.98690 2.38997 2.41480 2.78523 2.99516 3.37435 3.56095 3.82042 3.96791 4.00429 4.03365 4.05935 4.11505 4.27401 4.34134 4.37628 4.49243 4.52703 4.53629 4.55940 4.62431 4.71689 4.72408 4.84412 4.86295 4.88392 4.90055 4.91665 5.05538 5.15277 5.18290 5.25113 5.29832 5.41139 5.44757 5.47787 5.49233 5.63054 5.75399 5.83993 6.04914 6.50410 6.54757 6.63834 7.07631 7.30792 7.44169 8.80709 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.015994 B = 0.003959 C = 0.003603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1750.214095 B = 7070.331002 C = 7769.889912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.318 6.318 3 C 0.139 3.861 4 C -0.202 4.202 5 C -0.076 4.076 6 C -0.161 4.161 7 C -0.096 4.096 8 C -0.118 4.118 9 C -0.018 4.018 10 C -0.114 4.114 11 C -0.143 4.143 12 C 0.529 3.471 13 O -0.588 6.588 14 N -0.603 5.603 15 C 0.108 3.892 16 C -0.123 4.123 17 C 0.239 3.761 18 O -0.595 6.595 19 C -0.563 4.563 20 H 0.052 0.948 21 C 0.039 3.961 22 N -0.908 5.908 23 Si 0.959 3.041 24 H -0.279 1.279 25 H -0.275 1.275 26 H -0.274 1.274 27 C 0.127 3.873 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.117 0.883 31 H 0.161 0.839 32 H 0.154 0.846 33 H 0.128 0.872 34 H 0.101 0.899 35 H 0.092 0.908 36 H 0.055 0.945 37 H 0.043 0.957 38 H 0.066 0.934 39 H 0.052 0.948 40 H 0.101 0.899 41 H 0.067 0.933 42 H 0.091 0.909 43 H 0.059 0.941 44 H 0.074 0.926 45 H 0.383 0.617 46 H 0.273 0.727 47 H 0.059 0.941 48 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.352 -3.384 6.508 21.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.232 6.232 3 C 0.094 3.906 4 C -0.221 4.221 5 C -0.094 4.094 6 C -0.180 4.180 7 C -0.115 4.115 8 C -0.119 4.119 9 C -0.021 4.021 10 C -0.172 4.172 11 C -0.200 4.200 12 C 0.319 3.681 13 O -0.469 6.469 14 N -0.335 5.335 15 C -0.013 4.013 16 C -0.161 4.161 17 C 0.199 3.801 18 O -0.405 6.405 19 C -0.601 4.601 20 H 0.070 0.930 21 C -0.162 4.162 22 N -0.547 5.547 23 Si 0.784 3.216 24 H -0.204 1.204 25 H -0.200 1.200 26 H -0.199 1.199 27 C 0.005 3.995 28 H 0.084 0.916 29 H 0.084 0.916 30 H 0.136 0.864 31 H 0.178 0.822 32 H 0.171 0.829 33 H 0.146 0.854 34 H 0.119 0.881 35 H 0.111 0.889 36 H 0.074 0.926 37 H 0.062 0.938 38 H 0.085 0.915 39 H 0.071 0.929 40 H 0.120 0.880 41 H 0.086 0.914 42 H 0.109 0.891 43 H 0.078 0.922 44 H 0.093 0.907 45 H 0.234 0.766 46 H 0.083 0.917 47 H 0.077 0.923 48 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -19.896 -4.105 7.373 21.612 hybrid contribution 1.224 1.409 -0.639 1.973 sum -18.672 -2.696 6.735 20.032 Atomic orbital electron populations 1.23376 0.76722 1.05567 1.02329 1.86113 1.23057 1.25753 1.88265 1.18622 0.90330 0.85573 0.96112 1.21520 1.01331 0.91357 1.07856 1.21273 0.93729 0.98476 0.95911 1.21206 0.94991 0.97939 1.03829 1.21062 0.99527 0.92572 0.98310 1.18787 0.91366 0.93339 1.08441 1.19536 0.87621 0.94962 1.00009 1.21601 1.03010 0.99025 0.93526 1.22108 1.03484 0.98623 0.95785 1.20858 0.91268 0.75863 0.80075 1.90617 1.59656 1.55831 1.40805 1.48627 1.12026 1.57473 1.15358 1.22668 0.95397 0.98193 0.85086 1.23109 0.96787 0.95933 1.00315 1.19538 0.90883 0.85897 0.83773 1.86087 1.88404 1.43377 1.22638 1.21740 1.32719 1.09400 0.96229 0.92963 1.25564 0.95677 1.00108 0.94839 1.69625 1.43752 1.41020 1.00303 0.85548 0.78833 0.79226 0.77950 1.20445 1.20040 1.19852 1.21820 0.83111 0.96985 0.97627 0.91619 0.91617 0.86429 0.82194 0.82864 0.85418 0.88134 0.88927 0.92550 0.93794 0.91533 0.92868 0.88038 0.91442 0.89143 0.92182 0.90728 0.76590 0.91723 0.92289 0.94073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.13 9.81 113.37 1.11 1.25 16 2 O -0.32 -5.81 6.32 -92.46 -0.58 -6.40 16 3 C 0.14 3.12 6.28 22.51 0.14 3.26 16 4 C -0.20 -3.69 9.04 22.36 0.20 -3.49 16 5 C -0.08 -1.50 10.04 22.25 0.22 -1.28 16 6 C -0.16 -4.20 10.04 22.29 0.22 -3.97 16 7 C -0.10 -3.03 7.42 22.26 0.17 -2.86 16 8 C -0.12 -3.38 3.49 -19.77 -0.07 -3.45 16 9 C -0.02 -0.56 0.48 -53.67 -0.03 -0.59 16 10 C -0.11 -3.24 7.59 71.98 0.55 -2.69 16 11 C -0.14 -3.80 7.54 71.98 0.54 -3.26 16 12 C 0.53 21.18 5.13 87.66 0.45 21.63 16 13 O -0.59 -27.57 16.32 -3.01 -0.05 -27.62 16 14 N -0.60 -24.86 2.27 -811.37 -1.84 -26.70 16 15 C 0.11 4.04 4.42 86.93 0.38 4.43 16 16 C -0.12 -5.36 5.69 32.06 0.18 -5.18 16 17 C 0.24 11.87 0.85 -10.35 -0.01 11.86 16 18 O -0.59 -30.99 13.09 -148.98 -1.95 -32.94 16 19 C -0.56 -30.04 8.21 25.60 0.21 -29.83 16 20 H 0.05 2.84 7.53 -2.91 -0.02 2.81 16 21 C 0.04 2.02 5.28 84.65 0.45 2.46 16 22 N -0.91 -46.34 10.70 21.44 0.23 -46.11 16 23 Si 0.96 41.36 29.54 68.60 2.03 43.39 16 24 H -0.28 -12.01 7.11 99.48 0.71 -11.30 16 25 H -0.28 -11.40 7.11 99.48 0.71 -10.70 16 26 H -0.27 -11.78 7.11 99.48 0.71 -11.08 16 27 C 0.13 6.09 6.22 86.73 0.54 6.62 16 28 H 0.07 0.48 7.66 -2.39 -0.02 0.46 16 29 H 0.07 0.50 7.66 -2.39 -0.02 0.48 16 30 H 0.12 0.66 8.14 -2.39 -0.02 0.64 16 31 H 0.16 1.80 6.30 -2.91 -0.02 1.78 16 32 H 0.15 2.05 8.06 -2.91 -0.02 2.03 16 33 H 0.13 3.12 8.06 -2.91 -0.02 3.10 16 34 H 0.10 3.81 5.80 -2.91 -0.02 3.79 16 35 H 0.09 2.14 6.56 -2.39 -0.02 2.12 16 36 H 0.06 1.62 8.14 -2.38 -0.02 1.61 16 37 H 0.04 1.36 8.05 -2.39 -0.02 1.34 16 38 H 0.07 1.80 4.77 -2.39 -0.01 1.78 16 39 H 0.05 1.46 8.11 -2.38 -0.02 1.44 16 40 H 0.10 2.23 6.11 -2.39 -0.01 2.21 16 41 H 0.07 2.46 7.54 -2.39 -0.02 2.45 16 42 H 0.09 3.00 4.61 -2.39 -0.01 2.99 16 43 H 0.06 2.68 8.04 -2.38 -0.02 2.66 16 44 H 0.07 3.38 7.77 -2.39 -0.02 3.36 16 45 H 0.38 20.00 6.98 -74.06 -0.52 19.48 16 46 H 0.27 13.22 8.31 -92.71 -0.77 12.45 16 47 H 0.06 2.89 7.63 -2.39 -0.02 2.87 16 48 H 0.04 2.08 8.07 -2.39 -0.02 2.06 16 Total: -1.00 -64.17 367.02 3.57 -60.60 By element: Atomic # 1 Polarization: 40.38 SS G_CDS: 0.47 Total: 40.85 kcal Atomic # 6 Polarization: -10.34 SS G_CDS: 5.27 Total: -5.08 kcal Atomic # 7 Polarization: -71.20 SS G_CDS: -1.61 Total: -72.81 kcal Atomic # 8 Polarization: -64.37 SS G_CDS: -2.58 Total: -66.95 kcal Atomic # 14 Polarization: 41.36 SS G_CDS: 2.03 Total: 43.39 kcal Total: -64.17 3.57 -60.60 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592840752.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.654 kcal (2) G-P(sol) polarization free energy of solvation -64.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.603 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds