Wall clock time and date at job start Tue Mar 31 2020 18:36:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42891 * 1 3 3 C 1.35905 * 117.00380 * 2 1 4 4 C 1.38755 * 120.05291 * 359.97243 * 3 2 1 5 5 C 1.38117 * 119.94312 * 180.02562 * 4 3 2 6 6 C 1.38287 * 120.05621 * 0.02562 * 5 4 3 7 7 C 1.38250 * 120.11233 * 359.70724 * 6 5 4 8 8 C 1.38171 * 120.05208 * 0.54654 * 7 6 5 9 9 C 1.50695 * 120.02661 * 179.75332 * 8 7 6 10 10 C 1.53002 * 109.47064 * 245.57397 * 9 8 7 11 11 C 1.52996 * 109.47560 * 125.57130 * 9 8 7 12 12 C 1.50702 * 109.47308 * 5.57097 * 9 8 7 13 13 O 1.21282 * 120.00491 * 246.46199 * 12 9 8 14 14 N 1.34779 * 120.00003 * 66.45738 * 12 9 8 15 15 C 1.47424 * 125.64708 * 354.98057 * 14 12 9 16 16 C 1.54909 * 104.83457 * 204.09510 * 15 14 12 17 17 C 1.55162 * 101.57959 * 322.98982 * 16 15 14 18 18 O 1.42902 * 110.72124 * 277.13969 * 17 16 15 19 19 C 1.50699 * 110.87037 * 153.93782 * 17 16 15 20 20 H 1.08001 * 119.99547 * 243.95052 * 19 17 16 21 21 C 1.37874 * 119.99920 * 63.95058 * 19 17 16 22 22 N 1.31512 * 120.00423 * 359.97438 * 21 19 17 23 23 Si 1.86799 * 119.99749 * 180.02562 * 21 19 17 24 24 H 1.48501 * 109.47328 * 359.97438 * 23 21 19 25 25 H 1.48502 * 109.47216 * 119.99821 * 23 21 19 26 26 H 1.48503 * 109.47067 * 239.99925 * 23 21 19 27 27 C 1.47017 * 125.65150 * 174.93892 * 14 12 9 28 28 H 1.09003 * 109.47265 * 300.00743 * 1 2 3 29 29 H 1.09004 * 109.47122 * 60.00169 * 1 2 3 30 30 H 1.08995 * 109.47675 * 180.02562 * 1 2 3 31 31 H 1.08000 * 120.02368 * 0.02562 * 4 3 2 32 32 H 1.07997 * 119.97115 * 180.02562 * 5 4 3 33 33 H 1.07996 * 119.94635 * 179.97438 * 6 5 4 34 34 H 1.08000 * 119.97058 * 180.27544 * 7 6 5 35 35 H 1.09002 * 109.47000 * 179.97438 * 10 9 8 36 36 H 1.08998 * 109.46709 * 300.00030 * 10 9 8 37 37 H 1.09003 * 109.47145 * 59.99949 * 10 9 8 38 38 H 1.09003 * 109.47009 * 308.44770 * 11 9 8 39 39 H 1.09005 * 109.46980 * 68.44058 * 11 9 8 40 40 H 1.08997 * 109.47539 * 188.44083 * 11 9 8 41 41 H 1.09000 * 110.36947 * 322.93434 * 15 14 12 42 42 H 1.09003 * 110.36929 * 85.14080 * 15 14 12 43 43 H 1.09002 * 111.00223 * 204.92006 * 16 15 14 44 44 H 1.08997 * 111.00838 * 81.06615 * 16 15 14 45 45 H 0.96701 * 114.00049 * 293.52583 * 18 17 16 46 46 H 0.97004 * 120.00208 * 179.97438 * 22 21 19 47 47 H 1.09007 * 109.88116 * 59.56232 * 27 14 12 48 48 H 1.08996 * 110.01220 * 298.46944 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2914 2.3753 -0.0006 5 6 1.9209 3.6047 -0.0011 6 6 3.3020 3.6757 -0.0016 7 6 4.0560 2.5170 0.0045 8 6 3.4311 1.2847 -0.0002 9 6 4.2536 0.0220 0.0009 10 6 4.0376 -0.7285 -1.3148 11 6 3.8242 -0.8655 1.1708 12 6 5.7121 0.3727 0.1454 13 8 6.4807 0.1593 -0.7683 14 7 6.1626 0.9236 1.2900 15 6 5.3272 1.3314 2.4342 16 6 6.1582 2.4147 3.1659 17 6 7.5994 1.8626 3.0059 18 8 7.8798 0.8831 4.0080 19 6 8.6107 2.9787 3.0564 20 1 9.2183 3.1964 2.1905 21 6 8.7602 3.7219 4.2081 22 7 8.0200 3.4571 5.2624 23 14 10.0132 5.1059 4.2704 24 1 10.7126 5.1997 2.9638 25 1 9.3205 6.3883 4.5549 26 1 11.0030 4.8295 5.3424 27 6 7.5685 1.2167 1.6047 28 1 -0.3634 0.5140 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 0.2128 2.3203 -0.0006 32 1 1.3341 4.5113 -0.0011 33 1 3.7923 4.6379 -0.0024 34 1 5.1345 2.5751 0.0086 35 1 4.6329 -1.6416 -1.3142 36 1 2.9827 -0.9821 -1.4193 37 1 4.3436 -0.0962 -2.1483 38 1 3.8355 -0.2829 2.0920 39 1 2.8170 -1.2414 0.9911 40 1 4.5141 -1.7043 1.2629 41 1 4.3831 1.7493 2.0848 42 1 5.1446 0.4820 3.0924 43 1 5.8785 2.4776 4.2175 44 1 6.0544 3.3833 2.6770 45 1 7.9102 1.2378 4.9071 46 1 8.1254 3.9797 6.0727 47 1 7.9766 1.9091 0.8683 48 1 8.1499 0.2947 1.6085 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592840756.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:36:48 Heat of formation + Delta-G solvation = -88.252165 kcal Electronic energy + Delta-G solvation = -30895.906352 eV Core-core repulsion = 26916.477538 eV Total energy + Delta-G solvation = -3979.428813 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.01254 -39.43131 -37.47822 -37.23645 -34.99582 -34.25014 -32.17629 -30.40657 -29.83517 -29.60022 -28.40246 -27.47294 -26.86946 -25.34235 -23.58666 -22.60266 -22.08782 -20.90398 -19.59362 -18.56163 -18.09490 -17.20253 -16.58045 -16.18944 -15.88319 -15.54069 -15.23512 -14.96498 -14.67805 -14.49572 -14.16822 -14.00100 -13.62934 -13.35952 -13.12177 -12.96639 -12.48380 -12.32816 -12.27267 -12.01957 -11.98516 -11.82016 -11.60323 -11.54531 -11.41141 -11.35018 -11.21746 -11.09416 -10.99915 -10.70594 -10.59084 -10.50684 -10.45252 -10.09990 -9.39450 -9.17737 -8.79712 -8.66382 -8.19555 -8.14964 -7.94337 -6.29423 -4.36833 1.30093 1.43952 3.06479 3.15994 3.18338 3.27597 3.32332 3.58289 3.74422 4.26602 4.61582 4.68699 4.83187 4.93342 4.96403 4.98783 5.11464 5.20529 5.24512 5.28288 5.35599 5.43964 5.62607 5.70454 5.77460 5.85884 5.89564 5.95858 5.98639 6.02459 6.08030 6.09870 6.25432 6.29846 6.39836 6.43879 6.47944 6.49527 6.60474 6.72793 6.77925 6.95060 7.01478 7.31173 7.32602 7.36595 7.73395 8.01363 8.15779 8.64462 8.68675 9.31440 9.42774 10.78029 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.016431 B = 0.003865 C = 0.003559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1703.692373 B = 7242.200815 C = 7865.868693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.307 6.307 3 C 0.135 3.865 4 C -0.210 4.210 5 C -0.084 4.084 6 C -0.149 4.149 7 C -0.073 4.073 8 C -0.099 4.099 9 C -0.025 4.025 10 C -0.120 4.120 11 C -0.148 4.148 12 C 0.532 3.468 13 O -0.551 6.551 14 N -0.604 5.604 15 C 0.090 3.910 16 C -0.134 4.134 17 C 0.248 3.752 18 O -0.586 6.586 19 C -0.534 4.534 20 H 0.065 0.935 21 C 0.072 3.928 22 N -0.896 5.896 23 Si 0.901 3.099 24 H -0.271 1.271 25 H -0.282 1.282 26 H -0.282 1.282 27 C 0.121 3.879 28 H 0.054 0.946 29 H 0.053 0.947 30 H 0.097 0.903 31 H 0.126 0.874 32 H 0.123 0.877 33 H 0.126 0.874 34 H 0.134 0.866 35 H 0.061 0.939 36 H 0.067 0.933 37 H 0.059 0.941 38 H 0.068 0.932 39 H 0.079 0.921 40 H 0.058 0.942 41 H 0.068 0.932 42 H 0.062 0.938 43 H 0.085 0.915 44 H 0.065 0.935 45 H 0.384 0.616 46 H 0.268 0.732 47 H 0.071 0.929 48 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.022 -3.077 -7.143 18.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.221 6.221 3 C 0.090 3.910 4 C -0.228 4.228 5 C -0.102 4.102 6 C -0.167 4.167 7 C -0.091 4.091 8 C -0.100 4.100 9 C -0.028 4.028 10 C -0.178 4.178 11 C -0.205 4.205 12 C 0.320 3.680 13 O -0.430 6.430 14 N -0.336 5.336 15 C -0.032 4.032 16 C -0.172 4.172 17 C 0.208 3.792 18 O -0.396 6.396 19 C -0.572 4.572 20 H 0.083 0.917 21 C -0.130 4.130 22 N -0.536 5.536 23 Si 0.729 3.271 24 H -0.196 1.196 25 H -0.208 1.208 26 H -0.208 1.208 27 C -0.001 4.001 28 H 0.073 0.927 29 H 0.071 0.929 30 H 0.116 0.884 31 H 0.144 0.856 32 H 0.141 0.859 33 H 0.144 0.856 34 H 0.152 0.848 35 H 0.080 0.920 36 H 0.086 0.914 37 H 0.078 0.922 38 H 0.087 0.913 39 H 0.097 0.903 40 H 0.077 0.923 41 H 0.086 0.914 42 H 0.080 0.920 43 H 0.103 0.897 44 H 0.084 0.916 45 H 0.235 0.765 46 H 0.078 0.922 47 H 0.089 0.911 48 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -16.562 -3.764 -8.027 18.786 hybrid contribution 0.330 1.457 0.771 1.681 sum -16.232 -2.308 -7.256 17.929 Atomic orbital electron populations 1.23041 0.79119 1.03724 1.01192 1.86155 1.20689 1.26574 1.88635 1.18654 0.91140 0.84284 0.96946 1.21140 0.99708 0.92298 1.09684 1.20919 0.94619 0.96889 0.97735 1.21072 0.93777 0.98521 1.03340 1.21218 1.00855 0.91090 0.95930 1.18919 0.90245 0.94540 1.06341 1.19555 0.90731 0.93743 0.98798 1.21625 1.01678 0.99869 0.94591 1.22087 1.02375 0.99106 0.96883 1.20001 0.89674 0.77125 0.81202 1.90652 1.58152 1.54977 1.39206 1.48628 1.09643 1.59715 1.15644 1.22758 0.94598 0.98390 0.87502 1.23280 0.97436 0.96077 1.00440 1.19442 0.91084 0.85416 0.83277 1.86108 1.94269 1.38798 1.20423 1.21580 1.21027 1.15150 0.99474 0.91707 1.24978 0.95561 0.97145 0.95295 1.69652 1.39495 1.41235 1.03232 0.86381 0.81050 0.81335 0.78339 1.19580 1.20837 1.20773 1.22073 0.80531 0.99835 0.97612 0.92749 0.92880 0.88419 0.85593 0.85922 0.85638 0.84803 0.92045 0.91403 0.92212 0.91310 0.90271 0.92304 0.91350 0.91979 0.89679 0.91591 0.76478 0.92236 0.91102 0.92209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.17 9.81 101.05 0.99 1.16 16 2 O -0.31 -3.38 6.31 -19.44 -0.12 -3.51 16 3 C 0.13 1.71 6.29 -39.22 -0.25 1.46 16 4 C -0.21 -2.31 9.04 -39.43 -0.36 -2.67 16 5 C -0.08 -0.94 10.04 -39.61 -0.40 -1.34 16 6 C -0.15 -1.96 10.04 -39.56 -0.40 -2.36 16 7 C -0.07 -1.12 6.99 -39.60 -0.28 -1.40 16 8 C -0.10 -1.47 3.54 -104.48 -0.37 -1.84 16 9 C -0.03 -0.39 0.48 -156.81 -0.08 -0.47 16 10 C -0.12 -1.74 7.62 37.16 0.28 -1.46 16 11 C -0.15 -2.10 7.62 37.16 0.28 -1.81 16 12 C 0.53 10.32 5.03 -10.98 -0.06 10.26 16 13 O -0.55 -12.31 16.32 5.56 0.09 -12.22 16 14 N -0.60 -12.04 2.54 -170.52 -0.43 -12.48 16 15 C 0.09 1.67 4.47 -2.53 -0.01 1.66 16 16 C -0.13 -2.88 5.58 -24.58 -0.14 -3.01 16 17 C 0.25 5.95 0.85 -89.93 -0.08 5.87 16 18 O -0.59 -14.73 13.09 -35.23 -0.46 -15.19 16 19 C -0.53 -13.86 8.22 -34.44 -0.28 -14.14 16 20 H 0.06 1.70 7.55 -52.49 -0.40 1.30 16 21 C 0.07 1.84 5.27 -17.82 -0.09 1.75 16 22 N -0.90 -22.81 10.68 55.43 0.59 -22.22 16 23 Si 0.90 20.13 29.54 -169.99 -5.02 15.11 16 24 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 25 H -0.28 -6.26 7.11 56.52 0.40 -5.85 16 26 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 27 C 0.12 2.75 6.22 -3.07 -0.02 2.73 16 28 H 0.05 0.34 7.66 -51.93 -0.40 -0.06 16 29 H 0.05 0.32 7.66 -51.93 -0.40 -0.07 16 30 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.13 1.05 6.30 -52.49 -0.33 0.72 16 32 H 0.12 1.07 8.06 -52.49 -0.42 0.64 16 33 H 0.13 1.49 8.06 -52.49 -0.42 1.07 16 34 H 0.13 2.36 5.87 -52.49 -0.31 2.06 16 35 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.07 0.86 6.62 -51.93 -0.34 0.51 16 37 H 0.06 0.92 8.03 -51.93 -0.42 0.50 16 38 H 0.07 1.01 4.89 -51.93 -0.25 0.75 16 39 H 0.08 0.99 6.02 -51.93 -0.31 0.68 16 40 H 0.06 0.85 8.12 -51.93 -0.42 0.43 16 41 H 0.07 1.16 4.60 -51.93 -0.24 0.93 16 42 H 0.06 1.15 7.03 -51.93 -0.36 0.78 16 43 H 0.08 1.92 7.66 -51.93 -0.40 1.52 16 44 H 0.07 1.45 8.04 -51.93 -0.42 1.03 16 45 H 0.38 9.71 7.18 45.56 0.33 10.04 16 46 H 0.27 6.53 8.31 -40.82 -0.34 6.19 16 47 H 0.07 1.63 7.65 -51.93 -0.40 1.23 16 48 H 0.06 1.41 8.07 -51.93 -0.42 0.99 16 LS Contribution 366.57 15.07 5.52 5.52 Total: -1.00 -28.86 366.57 -7.38 -36.24 By element: Atomic # 1 Polarization: 20.66 SS G_CDS: -6.31 Total: 14.35 kcal Atomic # 6 Polarization: -4.37 SS G_CDS: -1.24 Total: -5.61 kcal Atomic # 7 Polarization: -34.85 SS G_CDS: 0.16 Total: -34.69 kcal Atomic # 8 Polarization: -30.43 SS G_CDS: -0.49 Total: -30.92 kcal Atomic # 14 Polarization: 20.13 SS G_CDS: -5.02 Total: 15.11 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -28.86 -7.38 -36.24 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592840756.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.012 kcal (2) G-P(sol) polarization free energy of solvation -28.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.240 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds