Wall clock time and date at job start Tue Mar 31 2020 18:36:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42891 * 1 3 3 C 1.35905 * 117.00380 * 2 1 4 4 C 1.38755 * 120.05291 * 359.97243 * 3 2 1 5 5 C 1.38117 * 119.94312 * 180.02562 * 4 3 2 6 6 C 1.38287 * 120.05621 * 0.02562 * 5 4 3 7 7 C 1.38250 * 120.11233 * 359.70724 * 6 5 4 8 8 C 1.38171 * 120.05208 * 0.54654 * 7 6 5 9 9 C 1.50695 * 120.02661 * 179.75332 * 8 7 6 10 10 C 1.53002 * 109.47064 * 245.57397 * 9 8 7 11 11 C 1.52996 * 109.47560 * 125.57130 * 9 8 7 12 12 C 1.50702 * 109.47308 * 5.57097 * 9 8 7 13 13 O 1.21282 * 120.00491 * 246.46199 * 12 9 8 14 14 N 1.34779 * 120.00003 * 66.45738 * 12 9 8 15 15 C 1.47424 * 125.64708 * 354.98057 * 14 12 9 16 16 C 1.54909 * 104.83457 * 204.09510 * 15 14 12 17 17 C 1.55162 * 101.57959 * 322.98982 * 16 15 14 18 18 O 1.42902 * 110.72124 * 277.13969 * 17 16 15 19 19 C 1.50699 * 110.87037 * 153.93782 * 17 16 15 20 20 H 1.08001 * 119.99547 * 243.95052 * 19 17 16 21 21 C 1.37874 * 119.99920 * 63.95058 * 19 17 16 22 22 N 1.31512 * 120.00423 * 359.97438 * 21 19 17 23 23 Si 1.86799 * 119.99749 * 180.02562 * 21 19 17 24 24 H 1.48501 * 109.47328 * 359.97438 * 23 21 19 25 25 H 1.48502 * 109.47216 * 119.99821 * 23 21 19 26 26 H 1.48503 * 109.47067 * 239.99925 * 23 21 19 27 27 C 1.47017 * 125.65150 * 174.93892 * 14 12 9 28 28 H 1.09003 * 109.47265 * 300.00743 * 1 2 3 29 29 H 1.09004 * 109.47122 * 60.00169 * 1 2 3 30 30 H 1.08995 * 109.47675 * 180.02562 * 1 2 3 31 31 H 1.08000 * 120.02368 * 0.02562 * 4 3 2 32 32 H 1.07997 * 119.97115 * 180.02562 * 5 4 3 33 33 H 1.07996 * 119.94635 * 179.97438 * 6 5 4 34 34 H 1.08000 * 119.97058 * 180.27544 * 7 6 5 35 35 H 1.09002 * 109.47000 * 179.97438 * 10 9 8 36 36 H 1.08998 * 109.46709 * 300.00030 * 10 9 8 37 37 H 1.09003 * 109.47145 * 59.99949 * 10 9 8 38 38 H 1.09003 * 109.47009 * 308.44770 * 11 9 8 39 39 H 1.09005 * 109.46980 * 68.44058 * 11 9 8 40 40 H 1.08997 * 109.47539 * 188.44083 * 11 9 8 41 41 H 1.09000 * 110.36947 * 322.93434 * 15 14 12 42 42 H 1.09003 * 110.36929 * 85.14080 * 15 14 12 43 43 H 1.09002 * 111.00223 * 204.92006 * 16 15 14 44 44 H 1.08997 * 111.00838 * 81.06615 * 16 15 14 45 45 H 0.96701 * 114.00049 * 293.52583 * 18 17 16 46 46 H 0.97004 * 120.00208 * 179.97438 * 22 21 19 47 47 H 1.09007 * 109.88116 * 59.56232 * 27 14 12 48 48 H 1.08996 * 110.01220 * 298.46944 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2914 2.3753 -0.0006 5 6 1.9209 3.6047 -0.0011 6 6 3.3020 3.6757 -0.0016 7 6 4.0560 2.5170 0.0045 8 6 3.4311 1.2847 -0.0002 9 6 4.2536 0.0220 0.0009 10 6 4.0376 -0.7285 -1.3148 11 6 3.8242 -0.8655 1.1708 12 6 5.7121 0.3727 0.1454 13 8 6.4807 0.1593 -0.7683 14 7 6.1626 0.9236 1.2900 15 6 5.3272 1.3314 2.4342 16 6 6.1582 2.4147 3.1659 17 6 7.5994 1.8626 3.0059 18 8 7.8798 0.8831 4.0080 19 6 8.6107 2.9787 3.0564 20 1 9.2183 3.1964 2.1905 21 6 8.7602 3.7219 4.2081 22 7 8.0200 3.4571 5.2624 23 14 10.0132 5.1059 4.2704 24 1 10.7126 5.1997 2.9638 25 1 9.3205 6.3883 4.5549 26 1 11.0030 4.8295 5.3424 27 6 7.5685 1.2167 1.6047 28 1 -0.3634 0.5140 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 0.2128 2.3203 -0.0006 32 1 1.3341 4.5113 -0.0011 33 1 3.7923 4.6379 -0.0024 34 1 5.1345 2.5751 0.0086 35 1 4.6329 -1.6416 -1.3142 36 1 2.9827 -0.9821 -1.4193 37 1 4.3436 -0.0962 -2.1483 38 1 3.8355 -0.2829 2.0920 39 1 2.8170 -1.2414 0.9911 40 1 4.5141 -1.7043 1.2629 41 1 4.3831 1.7493 2.0848 42 1 5.1446 0.4820 3.0924 43 1 5.8785 2.4776 4.2175 44 1 6.0544 3.3833 2.6770 45 1 7.9102 1.2378 4.9071 46 1 8.1254 3.9797 6.0727 47 1 7.9766 1.9091 0.8683 48 1 8.1499 0.2947 1.6085 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592840756.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:36:47 Heat of formation + Delta-G solvation = -105.869863 kcal Electronic energy + Delta-G solvation = -30896.670312 eV Core-core repulsion = 26916.477538 eV Total energy + Delta-G solvation = -3980.192774 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -42.22985 -40.68094 -39.13936 -38.25542 -36.36261 -35.96878 -34.18237 -31.50960 -31.34586 -30.67412 -30.12617 -28.19919 -28.07720 -27.10872 -25.03227 -23.82781 -23.18233 -22.21905 -21.40617 -19.98530 -19.34174 -18.90526 -17.92265 -17.20854 -16.99158 -16.95035 -16.71649 -16.54566 -16.09356 -15.78180 -15.52775 -15.27930 -14.86271 -14.60935 -14.53038 -14.44340 -14.00094 -13.77916 -13.43170 -13.29704 -13.27416 -13.21492 -13.13425 -13.02309 -12.82535 -12.70303 -12.52179 -12.45370 -12.29674 -12.26811 -12.06849 -11.95385 -11.83211 -11.57989 -11.27303 -10.78888 -10.61192 -10.16480 -9.78269 -9.62156 -9.08362 -8.25914 -6.40435 0.31976 0.48395 1.39414 1.43837 1.52729 1.53997 1.98779 2.38796 2.41105 2.77454 2.99216 3.37076 3.56154 3.80938 3.96934 3.99416 4.02702 4.06262 4.10794 4.26641 4.33736 4.37470 4.48596 4.52878 4.53944 4.55289 4.62590 4.70519 4.72273 4.84218 4.85784 4.88610 4.90025 4.91511 5.04906 5.15369 5.18558 5.24543 5.29887 5.41402 5.45150 5.46892 5.49438 5.61585 5.75065 5.83182 6.05123 6.49988 6.54867 6.63979 7.07587 7.30380 7.41280 8.80461 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.016431 B = 0.003865 C = 0.003559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1703.692373 B = 7242.200815 C = 7865.868693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.318 6.318 3 C 0.139 3.861 4 C -0.202 4.202 5 C -0.076 4.076 6 C -0.161 4.161 7 C -0.097 4.097 8 C -0.119 4.119 9 C -0.018 4.018 10 C -0.114 4.114 11 C -0.142 4.142 12 C 0.529 3.471 13 O -0.588 6.588 14 N -0.603 5.603 15 C 0.105 3.895 16 C -0.121 4.121 17 C 0.239 3.761 18 O -0.593 6.593 19 C -0.563 4.563 20 H 0.051 0.949 21 C 0.040 3.960 22 N -0.906 5.906 23 Si 0.959 3.041 24 H -0.277 1.277 25 H -0.274 1.274 26 H -0.278 1.278 27 C 0.127 3.873 28 H 0.065 0.935 29 H 0.066 0.934 30 H 0.117 0.883 31 H 0.161 0.839 32 H 0.155 0.845 33 H 0.130 0.870 34 H 0.100 0.900 35 H 0.055 0.945 36 H 0.092 0.908 37 H 0.044 0.956 38 H 0.064 0.936 39 H 0.102 0.898 40 H 0.051 0.949 41 H 0.091 0.909 42 H 0.069 0.931 43 H 0.076 0.924 44 H 0.056 0.944 45 H 0.382 0.618 46 H 0.273 0.727 47 H 0.057 0.943 48 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.411 -2.665 -6.963 21.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.232 6.232 3 C 0.094 3.906 4 C -0.220 4.220 5 C -0.093 4.093 6 C -0.179 4.179 7 C -0.115 4.115 8 C -0.120 4.120 9 C -0.021 4.021 10 C -0.172 4.172 11 C -0.198 4.198 12 C 0.319 3.681 13 O -0.469 6.469 14 N -0.335 5.335 15 C -0.016 4.016 16 C -0.160 4.160 17 C 0.199 3.801 18 O -0.403 6.403 19 C -0.601 4.601 20 H 0.069 0.931 21 C -0.162 4.162 22 N -0.545 5.545 23 Si 0.784 3.216 24 H -0.202 1.202 25 H -0.199 1.199 26 H -0.203 1.203 27 C 0.004 3.996 28 H 0.084 0.916 29 H 0.084 0.916 30 H 0.135 0.865 31 H 0.178 0.822 32 H 0.172 0.828 33 H 0.148 0.852 34 H 0.118 0.882 35 H 0.074 0.926 36 H 0.110 0.890 37 H 0.063 0.937 38 H 0.082 0.918 39 H 0.120 0.880 40 H 0.070 0.930 41 H 0.109 0.891 42 H 0.087 0.913 43 H 0.095 0.905 44 H 0.075 0.925 45 H 0.232 0.768 46 H 0.082 0.918 47 H 0.075 0.925 48 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -19.982 -3.361 -7.836 21.725 hybrid contribution 1.325 1.317 0.683 1.989 sum -18.657 -2.044 -7.154 20.086 Atomic orbital electron populations 1.23379 0.76713 1.05569 1.02348 1.86114 1.23070 1.25770 1.88255 1.18626 0.90322 0.85598 0.96094 1.21531 1.01358 0.91356 1.07769 1.21280 0.93736 0.98478 0.95840 1.21210 0.94987 0.97920 1.03810 1.21024 0.99421 0.92621 0.98472 1.18796 0.91411 0.93349 1.08411 1.19550 0.87671 0.94979 0.99936 1.21599 1.03010 0.99079 0.93466 1.22064 1.03445 0.98433 0.95906 1.20855 0.91345 0.75785 0.80082 1.90619 1.59639 1.56411 1.40256 1.48620 1.08453 1.59971 1.16423 1.22680 0.94576 0.97611 0.86767 1.23048 0.96369 0.96463 1.00126 1.19540 0.92163 0.85062 0.83305 1.86093 1.94499 1.39240 1.20431 1.21746 1.22137 1.16574 0.99650 0.93116 1.25562 0.96951 0.98797 0.94871 1.69701 1.39778 1.41616 1.03378 0.85503 0.79056 0.79102 0.77912 1.20175 1.19928 1.20318 1.21809 0.82306 0.98522 0.96921 0.91606 0.91578 0.86453 0.82168 0.82768 0.85236 0.88240 0.92588 0.88954 0.93705 0.91756 0.87962 0.92960 0.89147 0.91324 0.90503 0.92500 0.76787 0.91774 0.92480 0.93874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.13 9.81 113.37 1.11 1.24 16 2 O -0.32 -5.82 6.31 -92.48 -0.58 -6.40 16 3 C 0.14 3.10 6.29 22.51 0.14 3.25 16 4 C -0.20 -3.62 9.04 22.36 0.20 -3.41 16 5 C -0.08 -1.45 10.04 22.25 0.22 -1.23 16 6 C -0.16 -4.08 10.04 22.28 0.22 -3.85 16 7 C -0.10 -3.01 6.99 22.26 0.16 -2.85 16 8 C -0.12 -3.38 3.54 -19.77 -0.07 -3.45 16 9 C -0.02 -0.57 0.48 -53.68 -0.03 -0.59 16 10 C -0.11 -3.25 7.62 71.98 0.55 -2.70 16 11 C -0.14 -3.83 7.62 71.98 0.55 -3.28 16 12 C 0.53 21.26 5.03 87.66 0.44 21.70 16 13 O -0.59 -27.62 16.32 -3.04 -0.05 -27.67 16 14 N -0.60 -24.99 2.54 -811.79 -2.06 -27.05 16 15 C 0.11 3.96 4.47 86.86 0.39 4.35 16 16 C -0.12 -5.34 5.58 31.99 0.18 -5.16 16 17 C 0.24 11.90 0.85 -10.35 -0.01 11.89 16 18 O -0.59 -30.63 13.09 -148.98 -1.95 -32.58 16 19 C -0.56 -30.21 8.22 25.60 0.21 -29.99 16 20 H 0.05 2.79 7.55 -2.91 -0.02 2.77 16 21 C 0.04 2.04 5.27 84.65 0.45 2.48 16 22 N -0.91 -46.17 10.68 21.45 0.23 -45.94 16 23 Si 0.96 41.52 29.54 68.60 2.03 43.54 16 24 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 25 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 26 H -0.28 -11.80 7.11 99.48 0.71 -11.09 16 27 C 0.13 6.10 6.22 86.73 0.54 6.64 16 28 H 0.07 0.50 7.66 -2.39 -0.02 0.48 16 29 H 0.07 0.48 7.66 -2.38 -0.02 0.46 16 30 H 0.12 0.67 8.14 -2.39 -0.02 0.65 16 31 H 0.16 1.76 6.30 -2.91 -0.02 1.74 16 32 H 0.15 1.97 8.06 -2.91 -0.02 1.95 16 33 H 0.13 3.04 8.06 -2.91 -0.02 3.01 16 34 H 0.10 3.73 5.87 -2.91 -0.02 3.71 16 35 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 36 H 0.09 2.14 6.62 -2.39 -0.02 2.12 16 37 H 0.04 1.39 8.03 -2.39 -0.02 1.37 16 38 H 0.06 1.78 4.89 -2.39 -0.01 1.77 16 39 H 0.10 2.29 6.02 -2.38 -0.01 2.27 16 40 H 0.05 1.46 8.12 -2.39 -0.02 1.44 16 41 H 0.09 3.05 4.60 -2.39 -0.01 3.04 16 42 H 0.07 2.51 7.03 -2.39 -0.02 2.49 16 43 H 0.08 3.50 7.66 -2.39 -0.02 3.48 16 44 H 0.06 2.57 8.04 -2.39 -0.02 2.55 16 45 H 0.38 19.73 7.18 -74.06 -0.53 19.20 16 46 H 0.27 13.15 8.31 -92.71 -0.77 12.37 16 47 H 0.06 2.84 7.65 -2.38 -0.02 2.82 16 48 H 0.04 2.16 8.07 -2.39 -0.02 2.14 16 Total: -1.00 -64.25 366.57 3.32 -60.93 By element: Atomic # 1 Polarization: 39.70 SS G_CDS: 0.46 Total: 40.15 kcal Atomic # 6 Polarization: -10.23 SS G_CDS: 5.25 Total: -4.98 kcal Atomic # 7 Polarization: -71.16 SS G_CDS: -1.83 Total: -72.99 kcal Atomic # 8 Polarization: -64.07 SS G_CDS: -2.58 Total: -66.65 kcal Atomic # 14 Polarization: 41.52 SS G_CDS: 2.03 Total: 43.54 kcal Total: -64.25 3.32 -60.93 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592840756.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.943 kcal (2) G-P(sol) polarization free energy of solvation -64.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.926 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds