Wall clock time and date at job start Tue Mar 31 2020 17:40:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38282 * 119.97199 * 2 1 4 4 C 1.38248 * 120.11148 * 179.97438 * 3 2 1 5 5 C 1.38165 * 120.05352 * 0.02944 * 4 3 2 6 6 C 1.38715 * 119.94424 * 359.97438 * 5 4 3 7 7 O 1.35903 * 120.05514 * 179.72952 * 6 5 4 8 8 C 1.42908 * 116.99891 * 359.97438 * 7 6 5 9 9 C 1.53006 * 109.46797 * 180.02562 * 8 7 6 10 10 C 1.53000 * 109.46498 * 180.02562 * 9 8 7 11 11 C 1.50706 * 109.46591 * 179.97438 * 10 9 8 12 12 O 1.21277 * 119.99883 * 0.02562 * 11 10 9 13 13 N 1.34773 * 119.99846 * 180.02562 * 11 10 9 14 14 C 1.47432 * 125.64939 * 0.02723 * 13 11 10 15 15 C 1.54906 * 104.83182 * 204.09597 * 14 13 11 16 16 C 1.55164 * 101.58176 * 322.98722 * 15 14 13 17 17 O 1.42899 * 110.72094 * 276.96611 * 16 15 14 18 18 C 1.50697 * 110.72145 * 153.86754 * 16 15 14 19 19 H 1.07999 * 120.00464 * 241.45980 * 18 16 15 20 20 C 1.37878 * 119.99945 * 61.45322 * 18 16 15 21 21 N 1.31514 * 120.00092 * 0.02562 * 20 18 16 22 22 Si 1.86799 * 120.00170 * 179.97438 * 20 18 16 23 23 H 1.48502 * 109.46973 * 60.00342 * 22 20 18 24 24 H 1.48495 * 109.47349 * 180.02562 * 22 20 18 25 25 H 1.48498 * 109.47259 * 300.00341 * 22 20 18 26 26 C 1.47023 * 125.64947 * 179.72022 * 13 11 10 27 27 C 1.38123 * 119.96935 * 180.02562 * 2 1 3 28 28 H 1.09001 * 109.47250 * 89.99379 * 1 2 3 29 29 H 1.08996 * 109.47161 * 209.99872 * 1 2 3 30 30 H 1.08999 * 109.46710 * 329.99746 * 1 2 3 31 31 H 1.08000 * 119.94449 * 0.02870 * 3 2 1 32 32 H 1.07993 * 119.97213 * 180.02562 * 4 3 2 33 33 H 1.08000 * 120.02914 * 180.02562 * 5 4 3 34 34 H 1.08998 * 109.46878 * 300.00363 * 8 7 6 35 35 H 1.08998 * 109.46983 * 60.00341 * 8 7 6 36 36 H 1.08998 * 109.47012 * 299.99998 * 9 8 7 37 37 H 1.08998 * 109.46869 * 59.99959 * 9 8 7 38 38 H 1.08998 * 109.47460 * 299.99689 * 10 9 8 39 39 H 1.08998 * 109.47161 * 60.00119 * 10 9 8 40 40 H 1.08999 * 110.36375 * 322.92880 * 14 13 11 41 41 H 1.08991 * 110.36389 * 85.25460 * 14 13 11 42 42 H 1.08993 * 111.00999 * 81.05980 * 15 14 13 43 43 H 1.09003 * 111.00262 * 204.88041 * 15 14 13 44 44 H 0.96701 * 113.99885 * 298.54580 * 17 16 15 45 45 H 0.97005 * 120.00437 * 179.97438 * 21 20 18 46 46 H 1.08995 * 109.87959 * 298.39748 * 26 13 11 47 47 H 1.09001 * 109.88160 * 59.55791 * 26 13 11 48 48 H 1.07998 * 120.02778 * 0.02562 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1979 1.1979 0.0000 4 6 3.5804 1.2013 0.0005 5 6 4.2752 0.0070 0.0005 6 6 3.5845 -1.1959 0.0004 7 8 4.2657 -2.3719 -0.0053 8 6 5.6927 -2.2950 -0.0115 9 6 6.2795 -3.7081 -0.0179 10 6 7.8072 -3.6257 -0.0239 11 6 8.3852 -5.0175 -0.0295 12 8 7.6478 -5.9803 -0.0293 13 7 9.7216 -5.1922 -0.0348 14 6 10.7289 -4.1156 -0.0352 15 6 11.9957 -4.7581 -0.6531 16 6 11.9313 -6.1953 -0.0716 17 8 12.4844 -6.2331 1.2454 18 6 12.6438 -7.1684 -0.9751 19 1 12.0990 -7.9843 -1.4268 20 6 13.9912 -7.0172 -1.2254 21 7 14.6548 -6.0240 -0.6752 22 14 14.8745 -8.2239 -2.3448 23 1 14.2536 -8.1936 -3.6934 24 1 16.3063 -7.8445 -2.4499 25 1 14.7659 -9.5932 -1.7805 26 6 10.4164 -6.4878 -0.0348 27 6 2.1970 -1.1966 -0.0005 28 1 -0.3634 0.0001 -1.0277 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3633 0.8900 0.5139 31 1 1.6565 2.1324 0.0005 32 1 4.1176 2.1381 0.0010 33 1 5.3552 0.0101 0.0013 34 1 6.0238 -1.7604 -0.9017 35 1 6.0318 -1.7644 0.8782 36 1 5.9483 -4.2430 0.8722 37 1 5.9402 -4.2383 -0.9077 38 1 8.1388 -3.0906 -0.9137 39 1 8.1460 -3.0956 0.8662 40 1 10.3904 -3.2797 -0.6475 41 1 10.9299 -3.7840 0.9833 42 1 11.9349 -4.7739 -1.7412 43 1 12.8968 -4.2420 -0.3216 44 1 13.4172 -5.9818 1.2876 45 1 15.6028 -5.9177 -0.8509 46 1 10.1659 -7.0428 0.8692 47 1 10.1301 -7.0620 -0.9160 48 1 1.6570 -2.1318 -0.0014 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592840945.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:40:01 Heat of formation + Delta-G solvation = -112.851027 kcal Electronic energy + Delta-G solvation = -27480.622172 eV Core-core repulsion = 23500.126672 eV Total energy + Delta-G solvation = -3980.495500 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.42175 -39.58102 -38.04038 -37.35738 -34.35801 -33.90094 -32.80578 -32.25339 -30.54145 -29.78068 -28.54445 -27.49060 -26.97254 -24.98073 -22.96319 -22.71665 -21.93310 -20.98160 -19.75261 -18.77676 -17.92683 -17.30773 -16.79697 -16.59026 -16.25552 -16.00107 -15.53132 -15.03144 -14.96327 -14.55042 -14.33804 -14.23235 -13.93324 -13.62659 -13.49683 -13.22055 -13.05986 -12.50797 -12.42577 -12.31167 -12.10288 -12.05062 -11.78354 -11.72045 -11.52130 -11.41032 -11.38506 -11.32745 -10.98086 -10.90668 -10.75588 -10.66078 -10.53735 -10.15344 -9.52571 -9.34682 -9.08978 -8.70437 -8.44156 -8.27455 -8.06067 -6.32261 -4.39821 1.01789 1.17713 2.84978 3.00915 3.19862 3.24561 3.28193 3.46339 3.56138 4.24179 4.47569 4.49796 4.66748 4.72011 4.75857 4.88274 4.90366 4.95511 5.02889 5.11950 5.20082 5.21121 5.23633 5.25134 5.41386 5.44739 5.54448 5.57895 5.70800 5.77673 5.85964 5.95211 5.97193 6.02885 6.13866 6.15057 6.19438 6.28664 6.41425 6.50874 6.65251 6.85882 6.92077 7.20226 7.24975 7.30486 7.69475 7.98428 8.06717 8.57020 8.63080 9.26313 9.35409 10.75250 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.032925 B = 0.001695 C = 0.001666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 850.212183 B =16513.535996 C =16805.193046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.049 4.049 3 C -0.164 4.164 4 C -0.076 4.076 5 C -0.216 4.216 6 C 0.138 3.862 7 O -0.312 6.312 8 C 0.061 3.939 9 C -0.103 4.103 10 C -0.132 4.132 11 C 0.522 3.478 12 O -0.554 6.554 13 N -0.609 5.609 14 C 0.094 3.906 15 C -0.135 4.135 16 C 0.247 3.753 17 O -0.585 6.585 18 C -0.536 4.536 19 H 0.064 0.936 20 C 0.073 3.927 21 N -0.896 5.896 22 Si 0.903 3.097 23 H -0.275 1.275 24 H -0.285 1.285 25 H -0.274 1.274 26 C 0.122 3.878 27 C -0.156 4.156 28 H 0.073 0.927 29 H 0.068 0.932 30 H 0.068 0.932 31 H 0.121 0.879 32 H 0.124 0.876 33 H 0.128 0.872 34 H 0.064 0.936 35 H 0.064 0.936 36 H 0.082 0.918 37 H 0.082 0.918 38 H 0.093 0.907 39 H 0.093 0.907 40 H 0.060 0.940 41 H 0.063 0.937 42 H 0.067 0.933 43 H 0.088 0.912 44 H 0.382 0.618 45 H 0.269 0.731 46 H 0.061 0.939 47 H 0.072 0.928 48 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.941 16.383 0.950 25.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.049 4.049 3 C -0.182 4.182 4 C -0.094 4.094 5 C -0.235 4.235 6 C 0.092 3.908 7 O -0.226 6.226 8 C -0.015 4.015 9 C -0.141 4.141 10 C -0.172 4.172 11 C 0.310 3.690 12 O -0.433 6.433 13 N -0.342 5.342 14 C -0.029 4.029 15 C -0.173 4.173 16 C 0.206 3.794 17 O -0.394 6.394 18 C -0.574 4.574 19 H 0.082 0.918 20 C -0.129 4.129 21 N -0.536 5.536 22 Si 0.730 3.270 23 H -0.201 1.201 24 H -0.211 1.211 25 H -0.200 1.200 26 C 0.001 3.999 27 C -0.175 4.175 28 H 0.091 0.909 29 H 0.087 0.913 30 H 0.087 0.913 31 H 0.139 0.861 32 H 0.142 0.858 33 H 0.146 0.854 34 H 0.082 0.918 35 H 0.082 0.918 36 H 0.100 0.900 37 H 0.101 0.899 38 H 0.112 0.888 39 H 0.111 0.889 40 H 0.079 0.921 41 H 0.081 0.919 42 H 0.086 0.914 43 H 0.107 0.893 44 H 0.232 0.768 45 H 0.079 0.921 46 H 0.079 0.921 47 H 0.090 0.910 48 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -19.891 15.564 1.114 25.281 hybrid contribution 1.551 -0.110 -0.782 1.741 sum -18.340 15.454 0.331 23.985 Atomic orbital electron populations 1.20814 0.90774 1.02991 1.02584 1.19709 0.96045 0.92284 0.96899 1.20929 0.94183 0.97505 1.05585 1.20933 0.94173 0.97416 0.96913 1.21294 1.00445 0.92269 1.09504 1.19030 0.91792 0.84823 0.95113 1.86083 1.20398 1.27940 1.88164 1.22883 0.77855 0.99240 1.01478 1.21230 0.93040 0.94380 1.05403 1.21476 0.95429 0.95806 1.04484 1.20036 0.80958 0.91044 0.76988 1.90678 1.58518 1.42707 1.51401 1.48674 1.04630 1.09709 1.71153 1.22530 0.90057 0.89838 1.00459 1.23300 0.94779 0.99077 1.00174 1.19472 0.86994 0.91410 0.81493 1.86137 1.30953 1.92121 1.30224 1.21479 0.94463 1.12875 1.28600 0.91812 1.24977 0.97268 0.95274 0.95428 1.69680 1.09611 1.30067 1.44199 0.86470 0.78284 0.81355 0.80855 1.20067 1.21095 1.19969 1.22068 0.92692 0.83935 1.01224 1.20320 0.90975 0.98687 1.07503 0.90872 0.91279 0.91320 0.86054 0.85804 0.85385 0.91822 0.91825 0.89955 0.89928 0.88840 0.88875 0.92117 0.91880 0.91432 0.89324 0.76773 0.92145 0.92109 0.90992 0.85224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.67 10.01 36.01 0.36 -0.30 16 2 C -0.05 -0.42 5.88 -104.65 -0.62 -1.03 16 3 C -0.16 -1.32 9.70 -39.56 -0.38 -1.70 16 4 C -0.08 -0.63 10.04 -39.60 -0.40 -1.03 16 5 C -0.22 -2.06 9.04 -39.43 -0.36 -2.41 16 6 C 0.14 1.53 6.69 -39.22 -0.26 1.26 16 7 O -0.31 -3.76 10.14 -19.43 -0.20 -3.95 16 8 C 0.06 0.60 4.74 37.16 0.18 0.78 16 9 C -0.10 -1.23 4.87 -26.73 -0.13 -1.36 16 10 C -0.13 -1.61 4.71 -27.88 -0.13 -1.74 16 11 C 0.52 9.30 7.85 -10.98 -0.09 9.22 16 12 O -0.55 -11.80 16.31 5.56 0.09 -11.71 16 13 N -0.61 -11.64 3.33 -170.52 -0.57 -12.20 16 14 C 0.09 1.60 6.68 -2.53 -0.02 1.58 16 15 C -0.13 -2.79 5.47 -24.58 -0.13 -2.93 16 16 C 0.25 5.82 0.85 -89.93 -0.08 5.75 16 17 O -0.59 -14.39 13.07 -35.23 -0.46 -14.85 16 18 C -0.54 -13.84 8.22 -34.44 -0.28 -14.12 16 19 H 0.06 1.66 7.57 -52.49 -0.40 1.26 16 20 C 0.07 1.85 5.28 -17.82 -0.09 1.76 16 21 N -0.90 -22.52 10.67 55.43 0.59 -21.93 16 22 Si 0.90 20.02 29.54 -169.99 -5.02 15.00 16 23 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 24 H -0.29 -6.25 7.11 56.52 0.40 -5.85 16 25 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 26 C 0.12 2.73 6.23 -3.06 -0.02 2.71 16 27 C -0.16 -1.58 9.64 -39.44 -0.38 -1.96 16 28 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.07 0.37 8.08 -51.93 -0.42 -0.05 16 30 H 0.07 0.32 8.08 -51.93 -0.42 -0.10 16 31 H 0.12 0.72 8.06 -52.49 -0.42 0.30 16 32 H 0.12 0.75 8.06 -52.49 -0.42 0.33 16 33 H 0.13 1.02 6.30 -52.49 -0.33 0.69 16 34 H 0.06 0.55 7.67 -51.93 -0.40 0.15 16 35 H 0.06 0.54 7.66 -51.93 -0.40 0.15 16 36 H 0.08 1.09 8.10 -51.93 -0.42 0.67 16 37 H 0.08 1.09 8.10 -51.93 -0.42 0.67 16 38 H 0.09 0.96 7.85 -51.93 -0.41 0.56 16 39 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 40 H 0.06 0.84 7.48 -51.93 -0.39 0.45 16 41 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 42 H 0.07 1.45 8.04 -51.93 -0.42 1.03 16 43 H 0.09 1.91 7.54 -51.93 -0.39 1.51 16 44 H 0.38 9.35 7.46 45.56 0.34 9.69 16 45 H 0.27 6.51 8.31 -40.82 -0.34 6.17 16 46 H 0.06 1.41 8.07 -51.93 -0.42 1.00 16 47 H 0.07 1.64 7.66 -51.93 -0.40 1.24 16 48 H 0.13 1.20 8.06 -52.49 -0.42 0.78 16 LS Contribution 392.82 15.07 5.92 5.92 Total: -1.00 -29.54 392.82 -9.43 -38.97 By element: Atomic # 1 Polarization: 17.25 SS G_CDS: -6.96 Total: 10.29 kcal Atomic # 6 Polarization: -2.71 SS G_CDS: -2.83 Total: -5.54 kcal Atomic # 7 Polarization: -34.15 SS G_CDS: 0.02 Total: -34.13 kcal Atomic # 8 Polarization: -29.94 SS G_CDS: -0.57 Total: -30.51 kcal Atomic # 14 Polarization: 20.02 SS G_CDS: -5.02 Total: 15.00 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -29.54 -9.43 -38.97 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592840945.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.879 kcal (2) G-P(sol) polarization free energy of solvation -29.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.972 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds