Wall clock time and date at job start Tue Mar 31 2020 17:40:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38282 * 119.97199 * 2 1 4 4 C 1.38248 * 120.11148 * 179.97438 * 3 2 1 5 5 C 1.38165 * 120.05352 * 0.02944 * 4 3 2 6 6 C 1.38715 * 119.94424 * 359.97438 * 5 4 3 7 7 O 1.35903 * 120.05514 * 179.72952 * 6 5 4 8 8 C 1.42908 * 116.99891 * 359.97438 * 7 6 5 9 9 C 1.53006 * 109.46797 * 180.02562 * 8 7 6 10 10 C 1.53000 * 109.46498 * 180.02562 * 9 8 7 11 11 C 1.50706 * 109.46591 * 179.97438 * 10 9 8 12 12 O 1.21277 * 119.99883 * 0.02562 * 11 10 9 13 13 N 1.34773 * 119.99846 * 180.02562 * 11 10 9 14 14 C 1.47432 * 125.64939 * 0.02723 * 13 11 10 15 15 C 1.54906 * 104.83182 * 204.09597 * 14 13 11 16 16 C 1.55164 * 101.58176 * 322.98722 * 15 14 13 17 17 O 1.42899 * 110.72094 * 276.96611 * 16 15 14 18 18 C 1.50697 * 110.72145 * 153.86754 * 16 15 14 19 19 H 1.07999 * 120.00464 * 241.45980 * 18 16 15 20 20 C 1.37878 * 119.99945 * 61.45322 * 18 16 15 21 21 N 1.31514 * 120.00092 * 0.02562 * 20 18 16 22 22 Si 1.86799 * 120.00170 * 179.97438 * 20 18 16 23 23 H 1.48502 * 109.46973 * 60.00342 * 22 20 18 24 24 H 1.48495 * 109.47349 * 180.02562 * 22 20 18 25 25 H 1.48498 * 109.47259 * 300.00341 * 22 20 18 26 26 C 1.47023 * 125.64947 * 179.72022 * 13 11 10 27 27 C 1.38123 * 119.96935 * 180.02562 * 2 1 3 28 28 H 1.09001 * 109.47250 * 89.99379 * 1 2 3 29 29 H 1.08996 * 109.47161 * 209.99872 * 1 2 3 30 30 H 1.08999 * 109.46710 * 329.99746 * 1 2 3 31 31 H 1.08000 * 119.94449 * 0.02870 * 3 2 1 32 32 H 1.07993 * 119.97213 * 180.02562 * 4 3 2 33 33 H 1.08000 * 120.02914 * 180.02562 * 5 4 3 34 34 H 1.08998 * 109.46878 * 300.00363 * 8 7 6 35 35 H 1.08998 * 109.46983 * 60.00341 * 8 7 6 36 36 H 1.08998 * 109.47012 * 299.99998 * 9 8 7 37 37 H 1.08998 * 109.46869 * 59.99959 * 9 8 7 38 38 H 1.08998 * 109.47460 * 299.99689 * 10 9 8 39 39 H 1.08998 * 109.47161 * 60.00119 * 10 9 8 40 40 H 1.08999 * 110.36375 * 322.92880 * 14 13 11 41 41 H 1.08991 * 110.36389 * 85.25460 * 14 13 11 42 42 H 1.08993 * 111.00999 * 81.05980 * 15 14 13 43 43 H 1.09003 * 111.00262 * 204.88041 * 15 14 13 44 44 H 0.96701 * 113.99885 * 298.54580 * 17 16 15 45 45 H 0.97005 * 120.00437 * 179.97438 * 21 20 18 46 46 H 1.08995 * 109.87959 * 298.39748 * 26 13 11 47 47 H 1.09001 * 109.88160 * 59.55791 * 26 13 11 48 48 H 1.07998 * 120.02778 * 0.02562 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1979 1.1979 0.0000 4 6 3.5804 1.2013 0.0005 5 6 4.2752 0.0070 0.0005 6 6 3.5845 -1.1959 0.0004 7 8 4.2657 -2.3719 -0.0053 8 6 5.6927 -2.2950 -0.0115 9 6 6.2795 -3.7081 -0.0179 10 6 7.8072 -3.6257 -0.0239 11 6 8.3852 -5.0175 -0.0295 12 8 7.6478 -5.9803 -0.0293 13 7 9.7216 -5.1922 -0.0348 14 6 10.7289 -4.1156 -0.0352 15 6 11.9957 -4.7581 -0.6531 16 6 11.9313 -6.1953 -0.0716 17 8 12.4844 -6.2331 1.2454 18 6 12.6438 -7.1684 -0.9751 19 1 12.0990 -7.9843 -1.4268 20 6 13.9912 -7.0172 -1.2254 21 7 14.6548 -6.0240 -0.6752 22 14 14.8745 -8.2239 -2.3448 23 1 14.2536 -8.1936 -3.6934 24 1 16.3063 -7.8445 -2.4499 25 1 14.7659 -9.5932 -1.7805 26 6 10.4164 -6.4878 -0.0348 27 6 2.1970 -1.1966 -0.0005 28 1 -0.3634 0.0001 -1.0277 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3633 0.8900 0.5139 31 1 1.6565 2.1324 0.0005 32 1 4.1176 2.1381 0.0010 33 1 5.3552 0.0101 0.0013 34 1 6.0238 -1.7604 -0.9017 35 1 6.0318 -1.7644 0.8782 36 1 5.9483 -4.2430 0.8722 37 1 5.9402 -4.2383 -0.9077 38 1 8.1388 -3.0906 -0.9137 39 1 8.1460 -3.0956 0.8662 40 1 10.3904 -3.2797 -0.6475 41 1 10.9299 -3.7840 0.9833 42 1 11.9349 -4.7739 -1.7412 43 1 12.8968 -4.2420 -0.3216 44 1 13.4172 -5.9818 1.2876 45 1 15.6028 -5.9177 -0.8509 46 1 10.1659 -7.0428 0.8692 47 1 10.1301 -7.0620 -0.9160 48 1 1.6570 -2.1318 -0.0014 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592840945.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:40:00 Heat of formation + Delta-G solvation = -130.702228 kcal Electronic energy + Delta-G solvation = -27481.396258 eV Core-core repulsion = 23500.126672 eV Total energy + Delta-G solvation = -3981.269586 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.22583 -40.97824 -39.12635 -38.63734 -36.10147 -34.90298 -34.21429 -33.38265 -31.65300 -31.03223 -30.12348 -28.45665 -27.77676 -26.62811 -24.16396 -23.52907 -23.04664 -21.72654 -21.47056 -20.17257 -19.16416 -18.68715 -18.12440 -17.51112 -17.01640 -16.94022 -16.83116 -16.79126 -16.35538 -16.01013 -15.52816 -15.13623 -14.88228 -14.78862 -14.40511 -14.27270 -14.10282 -13.87050 -13.73456 -13.39328 -13.28521 -13.11830 -13.08979 -12.93790 -12.92910 -12.67273 -12.45874 -12.41894 -12.36948 -12.28775 -12.18269 -11.96809 -11.66440 -11.54426 -11.27804 -10.93378 -10.62705 -10.14971 -9.72349 -9.62941 -9.12788 -8.25406 -6.39606 0.38199 0.50885 1.41739 1.43887 1.50570 1.61824 1.89181 2.32092 2.40754 2.81839 3.00068 3.48974 3.82658 3.88640 3.89391 3.92314 4.01355 4.03052 4.14066 4.19378 4.31272 4.36439 4.39548 4.43549 4.46903 4.50570 4.55952 4.59046 4.59716 4.73760 4.83868 4.89022 4.92890 5.01822 5.02624 5.17474 5.18384 5.25543 5.27912 5.39677 5.47307 5.51968 5.54706 5.67481 5.76067 5.90231 6.08072 6.49065 6.59064 6.66022 7.13902 7.30504 7.40276 8.80227 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.032925 B = 0.001695 C = 0.001666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 850.212183 B =16513.535996 C =16805.193046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.055 4.055 3 C -0.168 4.168 4 C -0.080 4.080 5 C -0.225 4.225 6 C 0.114 3.886 7 O -0.337 6.337 8 C 0.064 3.936 9 C -0.097 4.097 10 C -0.118 4.118 11 C 0.514 3.486 12 O -0.597 6.597 13 N -0.613 5.613 14 C 0.103 3.897 15 C -0.126 4.126 16 C 0.233 3.767 17 O -0.593 6.593 18 C -0.567 4.567 19 H 0.048 0.952 20 C 0.040 3.960 21 N -0.903 5.903 22 Si 0.956 3.044 23 H -0.274 1.274 24 H -0.276 1.276 25 H -0.280 1.280 26 C 0.128 3.872 27 C -0.179 4.179 28 H 0.081 0.919 29 H 0.069 0.931 30 H 0.083 0.917 31 H 0.145 0.855 32 H 0.149 0.851 33 H 0.144 0.856 34 H 0.083 0.917 35 H 0.082 0.918 36 H 0.061 0.939 37 H 0.062 0.938 38 H 0.126 0.874 39 H 0.124 0.876 40 H 0.108 0.892 41 H 0.075 0.925 42 H 0.056 0.944 43 H 0.081 0.919 44 H 0.380 0.620 45 H 0.272 0.728 46 H 0.040 0.960 47 H 0.055 0.945 48 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.197 19.590 0.614 27.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.056 4.056 3 C -0.186 4.186 4 C -0.098 4.098 5 C -0.243 4.243 6 C 0.069 3.931 7 O -0.252 6.252 8 C -0.010 4.010 9 C -0.136 4.136 10 C -0.157 4.157 11 C 0.306 3.694 12 O -0.479 6.479 13 N -0.346 5.346 14 C -0.019 4.019 15 C -0.165 4.165 16 C 0.194 3.806 17 O -0.402 6.402 18 C -0.605 4.605 19 H 0.066 0.934 20 C -0.161 4.161 21 N -0.541 5.541 22 Si 0.782 3.218 23 H -0.199 1.199 24 H -0.201 1.201 25 H -0.205 1.205 26 C 0.005 3.995 27 C -0.197 4.197 28 H 0.099 0.901 29 H 0.088 0.912 30 H 0.102 0.898 31 H 0.162 0.838 32 H 0.167 0.833 33 H 0.161 0.839 34 H 0.101 0.899 35 H 0.101 0.899 36 H 0.080 0.920 37 H 0.081 0.919 38 H 0.144 0.856 39 H 0.142 0.858 40 H 0.126 0.874 41 H 0.093 0.907 42 H 0.075 0.925 43 H 0.099 0.901 44 H 0.230 0.770 45 H 0.082 0.918 46 H 0.058 0.942 47 H 0.073 0.927 48 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -20.150 18.805 0.781 27.573 hybrid contribution 1.586 -1.136 -0.660 2.060 sum -18.565 17.668 0.121 25.629 Atomic orbital electron populations 1.20868 0.89066 1.03817 1.03326 1.20048 0.97436 0.91963 0.96105 1.21297 0.94509 0.98210 1.04596 1.21301 0.94526 0.98043 0.95931 1.21527 1.01346 0.92030 1.09419 1.19285 0.92200 0.85072 0.96564 1.86031 1.21406 1.29044 1.88712 1.22876 0.77145 0.97728 1.03274 1.21119 0.93269 0.95642 1.03523 1.21498 0.94835 0.91980 1.07396 1.21140 0.80000 0.93029 0.75274 1.90660 1.59343 1.44856 1.53061 1.48766 1.05536 1.08751 1.71529 1.22589 0.87633 0.89885 1.01762 1.23074 0.96625 0.97291 0.99474 1.19612 0.87177 0.93020 0.80837 1.86122 1.30775 1.92325 1.30962 1.21703 0.95387 1.13554 1.29837 0.93357 1.25536 0.97569 0.96616 0.96422 1.69729 1.09813 1.30398 1.44203 0.85646 0.77649 0.79259 0.79255 1.19929 1.20068 1.20515 1.21751 0.92628 0.85732 0.99408 1.20528 0.91186 0.99385 1.08647 0.90073 0.91172 0.89811 0.83760 0.83342 0.83868 0.89925 0.89950 0.91972 0.91901 0.85623 0.85794 0.87429 0.90654 0.92477 0.90082 0.77037 0.91831 0.94195 0.92653 0.85669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.15 10.01 71.24 0.71 -0.43 16 2 C -0.06 -0.87 5.88 -19.88 -0.12 -0.99 16 3 C -0.17 -2.32 9.70 22.28 0.22 -2.10 16 4 C -0.08 -1.12 10.04 22.25 0.22 -0.90 16 5 C -0.22 -3.80 9.04 22.37 0.20 -3.60 16 6 C 0.11 2.44 6.69 22.51 0.15 2.59 16 7 O -0.34 -7.99 10.14 -92.45 -0.94 -8.92 16 8 C 0.06 1.14 4.74 71.98 0.34 1.48 16 9 C -0.10 -2.22 4.87 30.60 0.15 -2.07 16 10 C -0.12 -2.51 4.71 29.85 0.14 -2.37 16 11 C 0.51 17.86 7.85 87.66 0.69 18.55 16 12 O -0.60 -26.00 16.31 -3.02 -0.05 -26.05 16 13 N -0.61 -22.86 3.33 -811.78 -2.70 -25.56 16 14 C 0.10 3.22 6.68 86.85 0.58 3.80 16 15 C -0.13 -5.12 5.47 31.99 0.17 -4.94 16 16 C 0.23 11.19 0.85 -10.35 -0.01 11.18 16 17 O -0.59 -29.55 13.07 -148.98 -1.95 -31.49 16 18 C -0.57 -29.93 8.22 25.60 0.21 -29.72 16 19 H 0.05 2.62 7.57 -2.91 -0.02 2.59 16 20 C 0.04 2.05 5.28 84.66 0.45 2.49 16 21 N -0.90 -45.04 10.67 21.45 0.23 -44.81 16 22 Si 0.96 41.05 29.54 68.60 2.03 43.07 16 23 H -0.27 -11.64 7.11 99.48 0.71 -10.94 16 24 H -0.28 -11.34 7.11 99.48 0.71 -10.64 16 25 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 26 C 0.13 5.87 6.23 86.73 0.54 6.41 16 27 C -0.18 -3.59 9.64 22.36 0.22 -3.38 16 28 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 29 H 0.07 0.68 8.08 -2.39 -0.02 0.66 16 30 H 0.08 0.58 8.08 -2.39 -0.02 0.56 16 31 H 0.14 1.25 8.06 -2.91 -0.02 1.23 16 32 H 0.15 1.26 8.06 -2.91 -0.02 1.24 16 33 H 0.14 1.84 6.30 -2.91 -0.02 1.83 16 34 H 0.08 1.15 7.67 -2.39 -0.02 1.13 16 35 H 0.08 1.15 7.66 -2.39 -0.02 1.13 16 36 H 0.06 1.65 8.10 -2.39 -0.02 1.63 16 37 H 0.06 1.67 8.10 -2.39 -0.02 1.65 16 38 H 0.13 1.97 7.85 -2.39 -0.02 1.95 16 39 H 0.12 1.98 8.14 -2.39 -0.02 1.96 16 40 H 0.11 2.42 7.48 -2.39 -0.02 2.40 16 41 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 42 H 0.06 2.41 8.04 -2.39 -0.02 2.39 16 43 H 0.08 3.40 7.54 -2.39 -0.02 3.39 16 44 H 0.38 18.80 7.46 -74.06 -0.55 18.25 16 45 H 0.27 12.95 8.31 -92.70 -0.77 12.18 16 46 H 0.04 1.94 8.07 -2.39 -0.02 1.93 16 47 H 0.06 2.66 7.66 -2.39 -0.02 2.64 16 48 H 0.13 2.44 8.06 -2.91 -0.02 2.42 16 Total: -1.00 -66.66 392.82 1.89 -64.77 By element: Atomic # 1 Polarization: 32.59 SS G_CDS: 0.40 Total: 32.99 kcal Atomic # 6 Polarization: -8.87 SS G_CDS: 4.87 Total: -4.00 kcal Atomic # 7 Polarization: -67.90 SS G_CDS: -2.47 Total: -70.37 kcal Atomic # 8 Polarization: -63.53 SS G_CDS: -2.93 Total: -66.47 kcal Atomic # 14 Polarization: 41.05 SS G_CDS: 2.03 Total: 43.07 kcal Total: -66.66 1.89 -64.77 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592840945.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.933 kcal (2) G-P(sol) polarization free energy of solvation -66.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.769 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds