Wall clock time and date at job start Tue Mar 31 2020 17:27:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38294 * 119.94121 * 2 1 4 4 C 1.38117 * 120.05405 * 179.70109 * 3 2 1 5 5 C 1.38754 * 119.94359 * 0.59973 * 4 3 2 6 6 O 1.35905 * 120.05680 * 179.69973 * 5 4 3 7 7 C 1.42901 * 116.99885 * 359.72609 * 6 5 4 8 8 C 1.53004 * 109.46898 * 180.02562 * 7 6 5 9 9 C 1.50700 * 109.46723 * 179.97438 * 8 7 6 10 10 O 1.21282 * 120.00254 * 0.02562 * 9 8 7 11 11 N 1.34778 * 119.99819 * 179.97438 * 9 8 7 12 12 C 1.47021 * 125.64744 * 359.96801 * 11 9 8 13 13 C 1.54326 * 107.27002 * 181.08547 * 12 11 9 14 14 C 1.55151 * 102.94313 * 22.19392 * 13 12 11 15 15 O 1.42901 * 111.00842 * 82.56580 * 14 13 12 16 16 C 1.50698 * 111.00641 * 206.42337 * 14 13 12 17 17 H 1.07993 * 120.00138 * 112.19363 * 16 14 13 18 18 C 1.37875 * 119.99529 * 292.19405 * 16 14 13 19 19 N 1.31514 * 120.00358 * 359.97438 * 18 16 14 20 20 Si 1.86808 * 119.99716 * 179.97438 * 18 16 14 21 21 H 1.48498 * 109.47110 * 90.00108 * 20 18 16 22 22 H 1.48504 * 109.47044 * 209.99832 * 20 18 16 23 23 H 1.48500 * 109.47158 * 329.99853 * 20 18 16 24 24 C 1.47421 * 125.64805 * 179.97438 * 11 9 8 25 25 C 1.38711 * 119.89001 * 359.41999 * 5 4 3 26 26 C 1.50696 * 120.03104 * 180.29663 * 25 5 4 27 27 C 1.38168 * 119.94206 * 0.28056 * 25 5 4 28 28 H 1.09006 * 109.46874 * 269.97695 * 1 2 3 29 29 H 1.08996 * 109.47421 * 29.97328 * 1 2 3 30 30 H 1.09004 * 109.46871 * 149.97933 * 1 2 3 31 31 H 1.08000 * 119.96781 * 0.02562 * 3 2 1 32 32 H 1.08000 * 120.02817 * 180.32413 * 4 3 2 33 33 H 1.08995 * 109.47354 * 60.00060 * 7 6 5 34 34 H 1.09003 * 109.46695 * 299.99980 * 7 6 5 35 35 H 1.08995 * 109.47243 * 59.99779 * 8 7 6 36 36 H 1.08996 * 109.46877 * 299.99456 * 8 7 6 37 37 H 1.08996 * 109.88310 * 300.50411 * 12 11 9 38 38 H 1.09002 * 109.88672 * 61.51452 * 12 11 9 39 39 H 1.09000 * 110.72348 * 263.82382 * 13 12 11 40 40 H 1.09003 * 110.71705 * 140.55404 * 13 12 11 41 41 H 0.96708 * 113.99322 * 67.80350 * 15 14 13 42 42 H 0.96999 * 120.00046 * 179.97438 * 19 18 16 43 43 H 1.09002 * 110.36865 * 37.00989 * 24 11 9 44 44 H 1.08994 * 110.46657 * 274.73138 * 24 11 9 45 45 H 1.09002 * 109.47102 * 90.00644 * 26 25 5 46 46 H 1.08997 * 109.47181 * 210.00353 * 26 25 5 47 47 H 1.09004 * 109.47245 * 330.00897 * 26 25 5 48 48 H 1.08000 * 119.97311 * 179.97438 * 27 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1972 1.1984 0.0000 4 6 3.5784 1.2011 0.0062 5 6 4.2734 0.0002 -0.0001 6 8 5.6324 0.0002 -0.0001 7 6 6.2811 1.2735 0.0004 8 6 7.7980 1.0731 -0.0004 9 6 8.4820 2.4159 -0.0004 10 8 7.8215 3.4330 0.0006 11 7 9.8280 2.4865 -0.0005 12 6 10.7462 1.3383 0.0000 13 6 12.1831 1.9007 0.0276 14 6 11.9877 3.3246 0.6120 15 8 11.9175 3.2875 2.0388 16 6 13.0821 4.2525 0.1512 17 1 12.8525 5.0668 -0.5200 18 6 14.3763 4.0618 0.5865 19 7 14.6558 3.0704 1.4042 20 14 15.7330 5.2116 0.0147 21 1 15.8469 6.3514 0.9596 22 1 17.0213 4.4741 -0.0288 23 1 15.4095 5.7231 -1.3414 24 6 10.6232 3.7278 -0.0011 25 6 3.5788 -1.2005 -0.0005 26 6 4.3304 -2.5066 -0.0006 27 6 2.1971 -1.1979 -0.0004 28 1 -0.3633 -0.0004 1.0277 29 1 -0.3634 0.8902 -0.5134 30 1 -0.3633 -0.8898 -0.5142 31 1 1.6558 2.1328 0.0004 32 1 4.1170 2.1372 0.0115 33 1 5.9883 1.8301 0.8906 34 1 5.9881 1.8309 -0.8893 35 1 8.0905 0.5166 -0.8908 36 1 8.0912 0.5156 0.8892 37 1 10.5715 0.7243 0.8835 38 1 10.5959 0.7429 -0.9006 39 1 12.5971 1.9506 -0.9795 40 1 12.8196 1.3008 0.6780 41 1 12.7484 3.0398 2.4672 42 1 15.5664 2.9360 1.7102 43 1 10.1408 4.4877 0.6137 44 1 10.7578 4.0937 -1.0190 45 1 4.5113 -2.8218 1.0271 46 1 3.7404 -3.2653 -0.5147 47 1 5.2832 -2.3775 -0.5140 48 1 1.6558 -2.1324 -0.0012 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592841323.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:27:56 Heat of formation + Delta-G solvation = -112.672315 kcal Electronic energy + Delta-G solvation = -28003.784270 eV Core-core repulsion = 24023.296519 eV Total energy + Delta-G solvation = -3980.487750 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.47857 -39.57401 -37.96207 -37.24983 -34.37861 -33.56836 -32.19468 -32.07359 -31.45697 -29.79122 -28.36124 -27.43593 -26.41706 -25.52466 -24.13483 -22.40689 -21.52475 -20.86834 -19.76532 -18.83426 -18.19338 -17.28864 -16.60990 -16.44081 -16.21699 -15.27010 -15.08704 -15.02703 -14.98594 -14.51994 -14.17995 -14.04882 -13.71117 -13.68423 -13.38197 -13.33463 -13.07382 -12.73578 -12.66585 -12.26777 -12.14244 -12.04050 -11.83044 -11.73316 -11.52578 -11.49488 -11.39537 -11.36299 -10.94778 -10.86238 -10.73716 -10.64287 -10.52006 -10.10294 -9.57207 -9.45152 -8.99451 -8.73055 -8.27614 -8.12313 -8.08055 -6.35127 -4.42978 1.14622 1.24372 2.83516 2.94431 3.16675 3.24319 3.27316 3.53121 3.68937 4.22064 4.54507 4.60314 4.69117 4.75534 4.89627 4.90291 4.99417 5.05763 5.07177 5.19174 5.34241 5.35601 5.42308 5.48500 5.51256 5.54008 5.62613 5.64770 5.69502 5.73043 5.77222 5.81919 5.96188 6.04077 6.17392 6.22017 6.26816 6.37154 6.41610 6.57790 6.64985 6.81285 6.88718 7.24059 7.26472 7.28909 7.68392 7.92626 8.02974 8.49025 8.59668 9.26167 9.42164 10.72642 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.034411 B = 0.001918 C = 0.001854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 813.499284 B =14597.413538 C =15096.298583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.127 4.127 3 C -0.086 4.086 4 C -0.200 4.200 5 C 0.130 3.870 6 O -0.314 6.314 7 C 0.077 3.923 8 C -0.134 4.134 9 C 0.528 3.472 10 O -0.558 6.558 11 N -0.603 5.603 12 C 0.098 3.902 13 C -0.140 4.140 14 C 0.248 3.752 15 O -0.585 6.585 16 C -0.536 4.536 17 H 0.066 0.934 18 C 0.072 3.928 19 N -0.898 5.898 20 Si 0.904 3.096 21 H -0.278 1.278 22 H -0.284 1.284 23 H -0.272 1.272 24 C 0.119 3.881 25 C -0.116 4.116 26 C -0.105 4.105 27 C -0.086 4.086 28 H 0.066 0.934 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.123 0.877 32 H 0.132 0.868 33 H 0.071 0.929 34 H 0.070 0.930 35 H 0.101 0.899 36 H 0.102 0.898 37 H 0.060 0.940 38 H 0.055 0.945 39 H 0.069 0.931 40 H 0.084 0.916 41 H 0.386 0.614 42 H 0.270 0.730 43 H 0.071 0.929 44 H 0.072 0.928 45 H 0.067 0.933 46 H 0.062 0.938 47 H 0.071 0.929 48 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.811 -10.794 -3.165 22.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.127 4.127 3 C -0.104 4.104 4 C -0.218 4.218 5 C 0.084 3.916 6 O -0.228 6.228 7 C 0.002 3.998 8 C -0.174 4.174 9 C 0.316 3.684 10 O -0.438 6.438 11 N -0.335 5.335 12 C -0.025 4.025 13 C -0.178 4.178 14 C 0.208 3.792 15 O -0.395 6.395 16 C -0.574 4.574 17 H 0.084 0.916 18 C -0.130 4.130 19 N -0.537 5.537 20 Si 0.732 3.268 21 H -0.204 1.204 22 H -0.210 1.210 23 H -0.197 1.197 24 C -0.002 4.002 25 C -0.117 4.117 26 C -0.161 4.161 27 C -0.104 4.104 28 H 0.085 0.915 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.141 0.859 32 H 0.150 0.850 33 H 0.090 0.910 34 H 0.089 0.911 35 H 0.119 0.881 36 H 0.121 0.879 37 H 0.078 0.922 38 H 0.074 0.926 39 H 0.087 0.913 40 H 0.102 0.898 41 H 0.238 0.762 42 H 0.080 0.920 43 H 0.090 0.910 44 H 0.090 0.910 45 H 0.086 0.914 46 H 0.081 0.919 47 H 0.090 0.910 48 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -20.541 -10.340 -3.189 23.217 hybrid contribution 1.490 0.587 -0.159 1.609 sum -19.051 -9.753 -3.348 21.663 Atomic orbital electron populations 1.20703 0.91198 1.02496 1.02047 1.19793 0.96091 0.93017 1.03782 1.20817 0.93298 0.97653 0.98607 1.21359 0.95429 0.97437 1.07621 1.18793 0.82324 0.93590 0.96884 1.85962 1.16199 1.32224 1.88432 1.22453 0.91362 0.83069 1.02957 1.21419 0.93412 0.96810 1.05788 1.19741 0.81274 0.90353 0.77003 1.90677 1.63965 1.37212 1.51957 1.48569 1.04359 1.09949 1.70641 1.22208 0.91981 0.88373 0.99913 1.23212 0.91840 1.00462 1.02310 1.19590 0.89510 0.90547 0.79584 1.86100 1.40623 1.92706 1.20062 1.21475 0.92280 1.14210 1.29456 0.91602 1.24995 0.98737 0.95059 0.94222 1.69555 1.21097 1.29825 1.33264 0.86389 0.80556 0.80578 0.79308 1.20359 1.21006 1.19687 1.22416 0.91642 0.85870 1.00308 1.19258 0.93256 0.93546 1.05643 1.20604 1.00161 0.93052 1.02311 1.20721 0.92349 0.97706 0.99629 0.91522 0.91774 0.91802 0.85912 0.85007 0.91039 0.91127 0.88091 0.87932 0.92168 0.92638 0.91266 0.89771 0.76180 0.92018 0.91011 0.90974 0.91404 0.91859 0.91007 0.85619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.71 10.01 36.01 0.36 -0.35 16 2 C -0.13 -1.19 5.88 -104.60 -0.62 -1.81 16 3 C -0.09 -0.88 9.69 -39.61 -0.38 -1.26 16 4 C -0.20 -2.35 9.04 -39.44 -0.36 -2.70 16 5 C 0.13 1.61 6.66 -39.22 -0.26 1.35 16 6 O -0.31 -4.07 9.18 -19.44 -0.18 -4.24 16 7 C 0.08 1.01 4.03 37.16 0.15 1.16 16 8 C -0.13 -1.80 5.26 -27.88 -0.15 -1.95 16 9 C 0.53 9.49 7.85 -10.99 -0.09 9.41 16 10 O -0.56 -11.67 16.24 5.56 0.09 -11.58 16 11 N -0.60 -11.52 3.33 -170.51 -0.57 -12.09 16 12 C 0.10 1.69 6.49 -3.06 -0.02 1.67 16 13 C -0.14 -2.88 5.64 -24.90 -0.14 -3.02 16 14 C 0.25 5.85 0.89 -89.61 -0.08 5.77 16 15 O -0.58 -14.74 13.18 -35.23 -0.46 -15.20 16 16 C -0.54 -13.63 8.25 -34.44 -0.28 -13.91 16 17 H 0.07 1.67 7.77 -52.49 -0.41 1.26 16 18 C 0.07 1.81 5.30 -17.82 -0.09 1.72 16 19 N -0.90 -22.62 10.79 55.43 0.60 -22.02 16 20 Si 0.90 19.80 29.54 -169.99 -5.02 14.78 16 21 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 22 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 23 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 24 C 0.12 2.60 6.08 -2.52 -0.02 2.58 16 25 C -0.12 -1.28 5.89 -104.47 -0.62 -1.89 16 26 C -0.10 -0.95 9.79 36.00 0.35 -0.60 16 27 C -0.09 -0.82 9.35 -39.61 -0.37 -1.19 16 28 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.06 0.38 8.08 -51.93 -0.42 -0.04 16 30 H 0.06 0.36 8.08 -51.93 -0.42 -0.06 16 31 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 32 H 0.13 1.51 6.30 -52.49 -0.33 1.18 16 33 H 0.07 0.97 7.61 -51.93 -0.40 0.58 16 34 H 0.07 0.93 7.63 -51.93 -0.40 0.53 16 35 H 0.10 1.18 8.14 -51.93 -0.42 0.76 16 36 H 0.10 1.28 8.14 -51.93 -0.42 0.85 16 37 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 38 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.07 1.42 8.03 -51.93 -0.42 1.01 16 40 H 0.08 1.82 7.85 -51.93 -0.41 1.41 16 41 H 0.39 9.82 6.93 45.56 0.32 10.13 16 42 H 0.27 6.52 8.31 -40.82 -0.34 6.18 16 43 H 0.07 1.68 8.04 -51.93 -0.42 1.26 16 44 H 0.07 1.52 8.01 -51.93 -0.42 1.11 16 45 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 46 H 0.06 0.46 8.09 -51.93 -0.42 0.04 16 47 H 0.07 0.70 7.53 -51.93 -0.39 0.31 16 48 H 0.13 0.91 8.06 -52.49 -0.42 0.48 16 LS Contribution 392.90 15.07 5.92 5.92 Total: -1.00 -28.60 392.90 -9.27 -37.87 By element: Atomic # 1 Polarization: 18.63 SS G_CDS: -7.04 Total: 11.59 kcal Atomic # 6 Polarization: -2.42 SS G_CDS: -2.61 Total: -5.02 kcal Atomic # 7 Polarization: -34.14 SS G_CDS: 0.03 Total: -34.11 kcal Atomic # 8 Polarization: -30.47 SS G_CDS: -0.55 Total: -31.02 kcal Atomic # 14 Polarization: 19.80 SS G_CDS: -5.02 Total: 14.78 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -28.60 -9.27 -37.87 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592841323.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.805 kcal (2) G-P(sol) polarization free energy of solvation -28.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.867 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds