Wall clock time and date at job start Tue Mar 31 2020 17:27:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38294 * 119.94121 * 2 1 4 4 C 1.38117 * 120.05405 * 179.70109 * 3 2 1 5 5 C 1.38754 * 119.94359 * 0.59973 * 4 3 2 6 6 O 1.35905 * 120.05680 * 179.69973 * 5 4 3 7 7 C 1.42901 * 116.99885 * 359.72609 * 6 5 4 8 8 C 1.53004 * 109.46898 * 180.02562 * 7 6 5 9 9 C 1.50700 * 109.46723 * 179.97438 * 8 7 6 10 10 O 1.21282 * 120.00254 * 0.02562 * 9 8 7 11 11 N 1.34778 * 119.99819 * 179.97438 * 9 8 7 12 12 C 1.47021 * 125.64744 * 359.96801 * 11 9 8 13 13 C 1.54326 * 107.27002 * 181.08547 * 12 11 9 14 14 C 1.55151 * 102.94313 * 22.19392 * 13 12 11 15 15 O 1.42901 * 111.00842 * 82.56580 * 14 13 12 16 16 C 1.50698 * 111.00641 * 206.42337 * 14 13 12 17 17 H 1.07993 * 120.00138 * 112.19363 * 16 14 13 18 18 C 1.37875 * 119.99529 * 292.19405 * 16 14 13 19 19 N 1.31514 * 120.00358 * 359.97438 * 18 16 14 20 20 Si 1.86808 * 119.99716 * 179.97438 * 18 16 14 21 21 H 1.48498 * 109.47110 * 90.00108 * 20 18 16 22 22 H 1.48504 * 109.47044 * 209.99832 * 20 18 16 23 23 H 1.48500 * 109.47158 * 329.99853 * 20 18 16 24 24 C 1.47421 * 125.64805 * 179.97438 * 11 9 8 25 25 C 1.38711 * 119.89001 * 359.41999 * 5 4 3 26 26 C 1.50696 * 120.03104 * 180.29663 * 25 5 4 27 27 C 1.38168 * 119.94206 * 0.28056 * 25 5 4 28 28 H 1.09006 * 109.46874 * 269.97695 * 1 2 3 29 29 H 1.08996 * 109.47421 * 29.97328 * 1 2 3 30 30 H 1.09004 * 109.46871 * 149.97933 * 1 2 3 31 31 H 1.08000 * 119.96781 * 0.02562 * 3 2 1 32 32 H 1.08000 * 120.02817 * 180.32413 * 4 3 2 33 33 H 1.08995 * 109.47354 * 60.00060 * 7 6 5 34 34 H 1.09003 * 109.46695 * 299.99980 * 7 6 5 35 35 H 1.08995 * 109.47243 * 59.99779 * 8 7 6 36 36 H 1.08996 * 109.46877 * 299.99456 * 8 7 6 37 37 H 1.08996 * 109.88310 * 300.50411 * 12 11 9 38 38 H 1.09002 * 109.88672 * 61.51452 * 12 11 9 39 39 H 1.09000 * 110.72348 * 263.82382 * 13 12 11 40 40 H 1.09003 * 110.71705 * 140.55404 * 13 12 11 41 41 H 0.96708 * 113.99322 * 67.80350 * 15 14 13 42 42 H 0.96999 * 120.00046 * 179.97438 * 19 18 16 43 43 H 1.09002 * 110.36865 * 37.00989 * 24 11 9 44 44 H 1.08994 * 110.46657 * 274.73138 * 24 11 9 45 45 H 1.09002 * 109.47102 * 90.00644 * 26 25 5 46 46 H 1.08997 * 109.47181 * 210.00353 * 26 25 5 47 47 H 1.09004 * 109.47245 * 330.00897 * 26 25 5 48 48 H 1.08000 * 119.97311 * 179.97438 * 27 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1972 1.1984 0.0000 4 6 3.5784 1.2011 0.0062 5 6 4.2734 0.0002 -0.0001 6 8 5.6324 0.0002 -0.0001 7 6 6.2811 1.2735 0.0004 8 6 7.7980 1.0731 -0.0004 9 6 8.4820 2.4159 -0.0004 10 8 7.8215 3.4330 0.0006 11 7 9.8280 2.4865 -0.0005 12 6 10.7462 1.3383 0.0000 13 6 12.1831 1.9007 0.0276 14 6 11.9877 3.3246 0.6120 15 8 11.9175 3.2875 2.0388 16 6 13.0821 4.2525 0.1512 17 1 12.8525 5.0668 -0.5200 18 6 14.3763 4.0618 0.5865 19 7 14.6558 3.0704 1.4042 20 14 15.7330 5.2116 0.0147 21 1 15.8469 6.3514 0.9596 22 1 17.0213 4.4741 -0.0288 23 1 15.4095 5.7231 -1.3414 24 6 10.6232 3.7278 -0.0011 25 6 3.5788 -1.2005 -0.0005 26 6 4.3304 -2.5066 -0.0006 27 6 2.1971 -1.1979 -0.0004 28 1 -0.3633 -0.0004 1.0277 29 1 -0.3634 0.8902 -0.5134 30 1 -0.3633 -0.8898 -0.5142 31 1 1.6558 2.1328 0.0004 32 1 4.1170 2.1372 0.0115 33 1 5.9883 1.8301 0.8906 34 1 5.9881 1.8309 -0.8893 35 1 8.0905 0.5166 -0.8908 36 1 8.0912 0.5156 0.8892 37 1 10.5715 0.7243 0.8835 38 1 10.5959 0.7429 -0.9006 39 1 12.5971 1.9506 -0.9795 40 1 12.8196 1.3008 0.6780 41 1 12.7484 3.0398 2.4672 42 1 15.5664 2.9360 1.7102 43 1 10.1408 4.4877 0.6137 44 1 10.7578 4.0937 -1.0190 45 1 4.5113 -2.8218 1.0271 46 1 3.7404 -3.2653 -0.5147 47 1 5.2832 -2.3775 -0.5140 48 1 1.6558 -2.1324 -0.0012 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592841323.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:27:55 Heat of formation + Delta-G solvation = -129.137579 kcal Electronic energy + Delta-G solvation = -28004.498257 eV Core-core repulsion = 24023.296519 eV Total energy + Delta-G solvation = -3981.201738 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.43305 -40.97055 -39.16220 -38.58670 -36.13418 -34.35407 -34.14465 -33.09137 -32.35664 -31.37527 -30.00496 -28.10136 -27.51246 -26.86433 -25.39974 -23.80942 -22.51503 -21.63189 -21.52522 -20.21292 -19.31238 -19.06513 -17.92169 -17.56233 -17.19120 -16.95761 -16.64753 -16.37943 -15.94339 -15.82066 -15.42736 -15.13667 -14.90081 -14.74003 -14.49520 -14.15823 -14.10590 -13.93857 -13.78796 -13.60096 -13.36137 -13.33128 -13.19568 -13.06729 -12.82138 -12.68244 -12.60287 -12.49072 -12.38449 -12.26391 -12.20435 -11.88387 -11.68595 -11.63305 -11.32075 -11.04194 -10.64606 -10.16082 -9.77075 -9.62422 -8.93888 -8.26231 -6.40559 0.35836 0.44085 1.41750 1.45098 1.51604 1.53969 1.69023 2.35899 2.45353 2.74461 2.98916 3.49813 3.71456 3.83407 3.84403 3.86111 3.92817 4.03301 4.05568 4.23466 4.33455 4.35671 4.37802 4.38308 4.54483 4.58693 4.66345 4.68839 4.72039 4.77242 4.80123 4.85280 4.88102 4.89805 5.02815 5.15649 5.17028 5.24085 5.36100 5.39969 5.43878 5.50696 5.52829 5.68065 5.76828 5.89008 6.04189 6.38493 6.55404 6.63504 7.04138 7.30775 7.44437 8.80130 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.034411 B = 0.001918 C = 0.001854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 813.499284 B =14597.413538 C =15096.298583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.127 4.127 3 C -0.097 4.097 4 C -0.215 4.215 5 C 0.100 3.900 6 O -0.317 6.317 7 C 0.085 3.915 8 C -0.120 4.120 9 C 0.525 3.475 10 O -0.594 6.594 11 N -0.608 5.608 12 C 0.104 3.896 13 C -0.131 4.131 14 C 0.233 3.767 15 O -0.596 6.596 16 C -0.561 4.561 17 H 0.057 0.943 18 C 0.036 3.964 19 N -0.909 5.909 20 Si 0.961 3.039 21 H -0.281 1.281 22 H -0.277 1.277 23 H -0.271 1.271 24 C 0.124 3.876 25 C -0.126 4.126 26 C -0.103 4.103 27 C -0.089 4.089 28 H 0.075 0.925 29 H 0.070 0.930 30 H 0.077 0.923 31 H 0.138 0.862 32 H 0.124 0.876 33 H 0.059 0.941 34 H 0.064 0.936 35 H 0.128 0.872 36 H 0.119 0.881 37 H 0.076 0.924 38 H 0.095 0.905 39 H 0.066 0.934 40 H 0.072 0.928 41 H 0.382 0.618 42 H 0.273 0.727 43 H 0.045 0.955 44 H 0.074 0.926 45 H 0.072 0.928 46 H 0.083 0.917 47 H 0.062 0.938 48 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.063 -12.819 -3.853 24.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.127 4.127 3 C -0.115 4.115 4 C -0.234 4.234 5 C 0.055 3.945 6 O -0.231 6.231 7 C 0.009 3.991 8 C -0.160 4.160 9 C 0.315 3.685 10 O -0.476 6.476 11 N -0.340 5.340 12 C -0.018 4.018 13 C -0.170 4.170 14 C 0.192 3.808 15 O -0.406 6.406 16 C -0.600 4.600 17 H 0.075 0.925 18 C -0.165 4.165 19 N -0.549 5.549 20 Si 0.786 3.214 21 H -0.207 1.207 22 H -0.203 1.203 23 H -0.196 1.196 24 C 0.002 3.998 25 C -0.127 4.127 26 C -0.159 4.159 27 C -0.107 4.107 28 H 0.094 0.906 29 H 0.089 0.911 30 H 0.096 0.904 31 H 0.155 0.845 32 H 0.142 0.858 33 H 0.078 0.922 34 H 0.083 0.917 35 H 0.146 0.854 36 H 0.137 0.863 37 H 0.094 0.906 38 H 0.113 0.887 39 H 0.085 0.915 40 H 0.091 0.909 41 H 0.233 0.767 42 H 0.082 0.918 43 H 0.064 0.936 44 H 0.092 0.908 45 H 0.090 0.910 46 H 0.102 0.898 47 H 0.081 0.919 48 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -21.806 -12.392 -3.881 25.379 hybrid contribution 1.793 1.242 0.081 2.183 sum -20.012 -11.150 -3.800 23.222 Atomic orbital electron populations 1.20761 0.89021 1.03604 1.02929 1.20194 0.97738 0.92616 1.02147 1.21085 0.92859 0.98969 0.98633 1.21449 0.96324 0.97150 1.08482 1.19084 0.82104 0.94516 0.98747 1.85920 1.16769 1.31530 1.88917 1.22262 0.91355 0.83330 1.02174 1.21342 0.92891 0.93972 1.07770 1.20519 0.80637 0.91701 0.75643 1.90661 1.64558 1.39029 1.53338 1.48629 1.04981 1.09354 1.70999 1.22264 0.89143 0.87741 1.02615 1.23001 0.94092 0.98430 1.01444 1.19798 0.89910 0.92288 0.78781 1.86086 1.40346 1.92898 1.21298 1.21712 0.93457 1.14800 1.29993 0.92493 1.25610 1.00329 0.96279 0.94314 1.69614 1.21545 1.30389 1.33358 0.85517 0.78367 0.78787 0.78692 1.20654 1.20262 1.19560 1.22165 0.91244 0.86758 0.99683 1.19607 0.94092 0.93737 1.05233 1.20631 0.99878 0.92687 1.02743 1.21085 0.91956 0.98933 0.98709 0.90628 0.91077 0.90366 0.84460 0.85782 0.92249 0.91736 0.85436 0.86281 0.90614 0.88740 0.91494 0.90942 0.76693 0.91776 0.93596 0.90753 0.90971 0.89819 0.91896 0.82987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.12 10.01 71.24 0.71 -0.41 16 2 C -0.13 -2.15 5.88 -19.85 -0.12 -2.27 16 3 C -0.10 -1.92 9.69 22.25 0.22 -1.71 16 4 C -0.22 -5.11 9.04 22.36 0.20 -4.91 16 5 C 0.10 2.46 6.66 22.51 0.15 2.61 16 6 O -0.32 -8.01 9.18 -92.48 -0.85 -8.86 16 7 C 0.08 2.19 4.03 71.98 0.29 2.48 16 8 C -0.12 -3.01 5.26 29.85 0.16 -2.86 16 9 C 0.52 18.53 7.85 87.66 0.69 19.22 16 10 O -0.59 -25.25 16.24 -3.04 -0.05 -25.30 16 11 N -0.61 -22.76 3.33 -811.76 -2.70 -25.46 16 12 C 0.10 3.35 6.49 86.73 0.56 3.92 16 13 C -0.13 -5.31 5.64 31.78 0.18 -5.14 16 14 C 0.23 11.10 0.89 -10.14 -0.01 11.09 16 15 O -0.60 -30.65 13.18 -148.98 -1.96 -32.61 16 16 C -0.56 -29.00 8.25 25.60 0.21 -28.79 16 17 H 0.06 2.95 7.77 -2.91 -0.02 2.93 16 18 C 0.04 1.80 5.30 84.65 0.45 2.24 16 19 N -0.91 -45.86 10.79 21.45 0.23 -45.63 16 20 Si 0.96 40.58 29.54 68.60 2.03 42.61 16 21 H -0.28 -11.92 7.11 99.48 0.71 -11.21 16 22 H -0.28 -11.34 7.11 99.48 0.71 -10.63 16 23 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 24 C 0.12 5.53 6.08 86.86 0.53 6.06 16 25 C -0.13 -2.59 5.89 -19.77 -0.12 -2.71 16 26 C -0.10 -1.67 9.79 71.23 0.70 -0.97 16 27 C -0.09 -1.50 9.35 22.25 0.21 -1.30 16 28 H 0.08 0.70 8.14 -2.38 -0.02 0.68 16 29 H 0.07 0.66 8.08 -2.39 -0.02 0.64 16 30 H 0.08 0.62 8.08 -2.38 -0.02 0.60 16 31 H 0.14 2.17 8.06 -2.91 -0.02 2.14 16 32 H 0.12 3.01 6.30 -2.91 -0.02 2.99 16 33 H 0.06 1.66 7.61 -2.39 -0.02 1.64 16 34 H 0.06 1.73 7.63 -2.39 -0.02 1.71 16 35 H 0.13 2.57 8.14 -2.39 -0.02 2.55 16 36 H 0.12 2.66 8.14 -2.39 -0.02 2.64 16 37 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 38 H 0.09 2.37 8.14 -2.39 -0.02 2.35 16 39 H 0.07 2.70 8.03 -2.39 -0.02 2.68 16 40 H 0.07 3.09 7.85 -2.39 -0.02 3.08 16 41 H 0.38 19.83 6.93 -74.05 -0.51 19.32 16 42 H 0.27 13.08 8.31 -92.71 -0.77 12.31 16 43 H 0.05 2.23 8.04 -2.39 -0.02 2.21 16 44 H 0.07 3.21 8.01 -2.39 -0.02 3.19 16 45 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 46 H 0.08 0.98 8.09 -2.39 -0.02 0.96 16 47 H 0.06 1.13 7.53 -2.38 -0.02 1.11 16 48 H 0.15 1.68 8.06 -2.91 -0.02 1.66 16 Total: -1.00 -62.58 392.90 2.15 -60.43 By element: Atomic # 1 Polarization: 37.80 SS G_CDS: 0.44 Total: 38.25 kcal Atomic # 6 Polarization: -8.44 SS G_CDS: 5.01 Total: -3.43 kcal Atomic # 7 Polarization: -68.62 SS G_CDS: -2.47 Total: -71.09 kcal Atomic # 8 Polarization: -63.90 SS G_CDS: -2.86 Total: -66.77 kcal Atomic # 14 Polarization: 40.58 SS G_CDS: 2.03 Total: 42.61 kcal Total: -62.58 2.15 -60.43 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592841323.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.709 kcal (2) G-P(sol) polarization free energy of solvation -62.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.429 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds