Wall clock time and date at job start Tue Mar 31 2020 17:19:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38231 * 120.00016 * 2 1 4 4 C 1.38232 * 120.00236 * 179.97438 * 3 2 1 5 5 C 1.38236 * 119.99985 * 359.97438 * 4 3 2 6 6 C 1.50694 * 120.00185 * 180.02562 * 5 4 3 7 7 H 1.08995 * 109.47205 * 359.97438 * 6 5 4 8 8 C 1.53002 * 109.47136 * 240.00214 * 6 5 4 9 9 C 1.53001 * 109.47398 * 120.00270 * 6 5 4 10 10 H 1.09000 * 109.46864 * 65.59317 * 9 6 5 11 11 O 1.42900 * 109.46741 * 305.59813 * 9 6 5 12 12 C 1.50696 * 109.47118 * 185.59762 * 9 6 5 13 13 O 1.21282 * 119.99930 * 90.12020 * 12 9 6 14 14 N 1.34779 * 119.99916 * 270.11065 * 12 9 6 15 15 C 1.47016 * 125.64816 * 354.72518 * 14 12 9 16 16 C 1.54324 * 107.40265 * 178.82121 * 15 14 12 17 17 C 1.55408 * 102.82719 * 337.98051 * 16 15 14 18 18 O 1.42902 * 110.88732 * 277.26531 * 17 16 15 19 19 C 1.50700 * 111.06967 * 153.48561 * 17 16 15 20 20 H 1.07999 * 119.99736 * 247.65450 * 19 17 16 21 21 C 1.37873 * 120.00057 * 67.66506 * 19 17 16 22 22 N 1.31512 * 119.99978 * 359.97438 * 21 19 17 23 23 Si 1.86803 * 119.99808 * 179.97438 * 21 19 17 24 24 H 1.48500 * 109.47118 * 89.99955 * 23 21 19 25 25 H 1.48506 * 109.46771 * 209.99496 * 23 21 19 26 26 H 1.48496 * 109.47324 * 329.99400 * 23 21 19 27 27 C 1.47425 * 125.64569 * 174.67929 * 14 12 9 28 28 C 1.38242 * 119.99577 * 0.27900 * 5 4 3 29 29 C 1.38227 * 120.00212 * 359.53429 * 28 5 4 30 30 H 1.09005 * 109.46971 * 90.00671 * 1 2 3 31 31 H 1.09005 * 109.47291 * 209.99745 * 1 2 3 32 32 H 1.09000 * 109.47384 * 330.00339 * 1 2 3 33 33 H 1.08007 * 120.00228 * 359.97438 * 3 2 1 34 34 H 1.08004 * 120.00103 * 179.97438 * 4 3 2 35 35 H 1.08992 * 109.47312 * 56.24592 * 8 6 5 36 36 H 1.09002 * 109.47347 * 176.25336 * 8 6 5 37 37 H 1.09006 * 109.47246 * 296.24999 * 8 6 5 38 38 H 0.96703 * 114.00058 * 300.00097 * 11 9 6 39 39 H 1.09001 * 109.88371 * 298.31774 * 15 14 12 40 40 H 1.09000 * 109.88105 * 59.33107 * 15 14 12 41 41 H 1.09008 * 110.71822 * 96.24420 * 16 15 14 42 42 H 1.08996 * 110.72486 * 219.52023 * 16 15 14 43 43 H 0.96700 * 113.99575 * 292.22952 * 18 17 16 44 44 H 0.97010 * 119.99658 * 180.02562 * 22 21 19 45 45 H 1.09002 * 110.36600 * 323.00622 * 27 14 12 46 46 H 1.08994 * 110.36794 * 85.21989 * 27 14 12 47 47 H 1.07998 * 119.99684 * 179.72949 * 28 5 4 48 48 H 1.07997 * 120.00248 * 180.23153 * 29 28 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5805 1.1972 0.0005 5 6 4.2717 0.0000 0.0016 6 6 5.7786 0.0000 0.0028 7 1 6.1420 1.0276 0.0021 8 6 6.2896 -0.7217 -1.2458 9 6 6.2877 -0.7207 1.2527 10 1 6.0085 -1.7732 1.2042 11 8 5.7062 -0.1267 2.4150 12 6 7.7883 -0.6017 1.3250 13 8 8.2950 0.3334 1.9078 14 7 8.5671 -1.5347 0.7422 15 6 8.0914 -2.7697 0.1020 16 6 9.3283 -3.5099 -0.4491 17 6 10.3799 -2.3732 -0.5817 18 8 10.2015 -1.6542 -1.8037 19 6 11.7815 -2.9171 -0.4780 20 1 12.3960 -2.6670 0.3742 21 6 12.2794 -3.7336 -1.4711 22 7 11.5310 -4.0384 -2.5086 23 14 14.0170 -4.4071 -1.3427 24 1 13.9919 -5.7089 -0.6285 25 1 14.5747 -4.6009 -2.7054 26 1 14.8659 -3.4471 -0.5924 27 6 10.0370 -1.4851 0.6403 28 6 3.5805 -1.1971 -0.0037 29 6 2.1982 -1.1972 -0.0003 30 1 -0.3633 -0.0001 -1.0277 31 1 -0.3634 -0.8900 0.5138 32 1 -0.3634 0.8900 0.5138 33 1 1.6582 2.1325 -0.0004 34 1 4.1205 2.1325 0.0001 35 1 5.8731 -0.2486 -2.1350 36 1 7.3776 -0.6640 -1.2792 37 1 5.9822 -1.7670 -1.2126 38 1 5.9132 0.8118 2.5226 39 1 7.5815 -3.3947 0.8351 40 1 7.4113 -2.5259 -0.7142 41 1 9.6688 -4.2692 0.2550 42 1 9.1114 -3.9531 -1.4209 43 1 10.4042 -2.1695 -2.5964 44 1 11.8812 -4.6132 -3.2072 45 1 10.3712 -0.4615 0.4710 46 1 10.4937 -1.8880 1.5442 47 1 4.1205 -2.1324 -0.0073 48 1 1.6582 -2.1324 -0.0007 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592848490.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:19:37 Heat of formation + Delta-G solvation = -117.294781 kcal Electronic energy + Delta-G solvation = -29659.597856 eV Core-core repulsion = 25678.909660 eV Total energy + Delta-G solvation = -3980.688195 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.42720 -39.31896 -37.69039 -36.38645 -34.74427 -34.13843 -32.19162 -31.63523 -30.97261 -29.93072 -28.48483 -26.91844 -26.73704 -24.92932 -23.09223 -22.60088 -22.12297 -20.44594 -19.76016 -19.08733 -17.65031 -17.10592 -16.68771 -16.18014 -15.56701 -15.47545 -15.03993 -14.96596 -14.51636 -14.40400 -14.26063 -13.91297 -13.67920 -13.48737 -13.27967 -13.12811 -12.74453 -12.59048 -12.39264 -12.25137 -12.11894 -11.89130 -11.78103 -11.61285 -11.55108 -11.37612 -11.23507 -10.99435 -10.92822 -10.87793 -10.61157 -10.53708 -10.35263 -10.06764 -9.50926 -9.22264 -8.97679 -8.73355 -8.51912 -8.27022 -8.05282 -6.35365 -4.42815 1.25252 1.34993 2.86356 3.16030 3.24056 3.27647 3.41587 3.68766 4.21881 4.33246 4.55877 4.63604 4.76552 4.82321 4.90060 4.93392 4.97860 5.03866 5.19861 5.33882 5.37862 5.39179 5.47503 5.50595 5.60448 5.61754 5.70538 5.77477 5.84830 5.91393 5.97342 6.02829 6.07325 6.18259 6.31977 6.35630 6.40727 6.50129 6.58011 6.59141 6.81915 6.88591 6.94238 7.23335 7.26519 7.54449 7.68267 7.92780 8.03516 8.47830 8.59671 9.26178 9.41103 10.72271 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.024300 B = 0.002737 C = 0.002598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1152.002503 B =10229.350255 C =10774.504229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.095 4.095 3 C -0.119 4.119 4 C -0.111 4.111 5 C -0.063 4.063 6 C -0.075 4.075 7 H 0.086 0.914 8 C -0.155 4.155 9 C 0.105 3.895 10 H 0.115 0.885 11 O -0.538 6.538 12 C 0.499 3.501 13 O -0.553 6.553 14 N -0.598 5.598 15 C 0.081 3.919 16 C -0.139 4.139 17 C 0.251 3.749 18 O -0.584 6.584 19 C -0.535 4.535 20 H 0.065 0.935 21 C 0.073 3.927 22 N -0.897 5.897 23 Si 0.904 3.096 24 H -0.279 1.279 25 H -0.284 1.284 26 H -0.272 1.272 27 C 0.118 3.882 28 C -0.105 4.105 29 C -0.118 4.118 30 H 0.067 0.933 31 H 0.064 0.936 32 H 0.064 0.936 33 H 0.119 0.881 34 H 0.120 0.880 35 H 0.062 0.938 36 H 0.081 0.919 37 H 0.064 0.936 38 H 0.381 0.619 39 H 0.053 0.947 40 H 0.074 0.926 41 H 0.067 0.933 42 H 0.084 0.916 43 H 0.386 0.614 44 H 0.269 0.731 45 H 0.070 0.930 46 H 0.071 0.929 47 H 0.120 0.880 48 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.347 4.213 1.811 18.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.095 4.095 3 C -0.137 4.137 4 C -0.129 4.129 5 C -0.063 4.063 6 C -0.094 4.094 7 H 0.104 0.896 8 C -0.212 4.212 9 C 0.043 3.957 10 H 0.132 0.868 11 O -0.343 6.343 12 C 0.286 3.714 13 O -0.433 6.433 14 N -0.331 5.331 15 C -0.042 4.042 16 C -0.177 4.177 17 C 0.210 3.790 18 O -0.394 6.394 19 C -0.574 4.574 20 H 0.083 0.917 21 C -0.130 4.130 22 N -0.537 5.537 23 Si 0.731 3.269 24 H -0.204 1.204 25 H -0.210 1.210 26 H -0.197 1.197 27 C -0.003 4.003 28 C -0.123 4.123 29 C -0.136 4.136 30 H 0.086 0.914 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.137 0.863 34 H 0.138 0.862 35 H 0.081 0.919 36 H 0.100 0.900 37 H 0.083 0.917 38 H 0.230 0.770 39 H 0.071 0.929 40 H 0.092 0.908 41 H 0.086 0.914 42 H 0.102 0.898 43 H 0.238 0.762 44 H 0.079 0.921 45 H 0.089 0.911 46 H 0.089 0.911 47 H 0.138 0.862 48 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -18.538 4.532 2.485 19.245 hybrid contribution 1.360 -0.502 -0.481 1.527 sum -17.178 4.030 2.004 17.758 Atomic orbital electron populations 1.20770 0.91472 1.02589 1.02102 1.19880 0.95886 0.93305 1.00468 1.20953 0.94054 0.97380 1.01327 1.21018 0.94131 0.97428 1.00296 1.19581 0.94179 0.93387 0.99164 1.20759 0.91833 1.01477 0.95329 0.89595 1.22120 1.03077 1.00064 0.95902 1.21897 0.88781 0.99162 0.85883 0.86758 1.86567 1.74087 1.29703 1.43935 1.20987 0.89598 0.81972 0.78827 1.90659 1.75562 1.33276 1.43775 1.48630 1.08700 1.21005 1.54741 1.22569 0.99616 0.85363 0.96629 1.23243 0.93868 0.99273 1.01341 1.19606 0.92268 0.85602 0.81523 1.86081 1.91353 1.44687 1.17326 1.21474 0.98673 1.29812 1.07404 0.91666 1.24981 0.98207 0.94984 0.94799 1.69555 1.36847 1.37210 1.10101 0.86397 0.83701 0.79249 0.77537 1.20449 1.20992 1.19676 1.22418 0.77735 1.01471 0.98723 1.20945 0.94057 0.97644 0.99616 1.20972 0.94078 0.97429 1.01080 0.91387 0.91683 0.91739 0.86342 0.86215 0.91864 0.90014 0.91715 0.77007 0.92908 0.90806 0.91404 0.89776 0.76184 0.92051 0.91143 0.91090 0.86172 0.86241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.81 10.01 36.01 0.36 -0.45 16 2 C -0.10 -0.94 5.88 -104.62 -0.62 -1.56 16 3 C -0.12 -1.20 9.70 -39.59 -0.38 -1.58 16 4 C -0.11 -1.22 9.67 -39.58 -0.38 -1.60 16 5 C -0.06 -0.75 4.28 -104.62 -0.45 -1.20 16 6 C -0.07 -0.96 2.30 -91.77 -0.21 -1.17 16 7 H 0.09 1.13 7.88 -51.93 -0.41 0.72 16 8 C -0.15 -2.03 7.17 37.16 0.27 -1.76 16 9 C 0.11 1.52 2.41 -27.88 -0.07 1.46 16 10 H 0.11 1.55 6.61 -51.93 -0.34 1.21 16 11 O -0.54 -7.86 12.67 -53.09 -0.67 -8.53 16 12 C 0.50 9.14 6.39 -10.99 -0.07 9.07 16 13 O -0.55 -11.81 16.73 -12.30 -0.21 -12.01 16 14 N -0.60 -11.30 2.76 -170.53 -0.47 -11.77 16 15 C 0.08 1.37 5.54 -3.07 -0.02 1.35 16 16 C -0.14 -2.82 5.66 -24.76 -0.14 -2.96 16 17 C 0.25 5.79 0.89 -89.49 -0.08 5.71 16 18 O -0.58 -14.16 13.18 -35.23 -0.46 -14.63 16 19 C -0.54 -13.50 8.26 -34.44 -0.28 -13.79 16 20 H 0.07 1.65 7.77 -52.49 -0.41 1.24 16 21 C 0.07 1.81 5.30 -17.82 -0.09 1.71 16 22 N -0.90 -22.33 10.79 55.43 0.60 -21.73 16 23 Si 0.90 19.75 29.54 -169.99 -5.02 14.73 16 24 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 25 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 26 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 27 C 0.12 2.56 6.06 -2.53 -0.02 2.55 16 28 C -0.10 -1.19 8.81 -39.58 -0.35 -1.53 16 29 C -0.12 -1.21 9.70 -39.59 -0.38 -1.60 16 30 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.06 0.42 8.09 -51.93 -0.42 0.00 16 32 H 0.06 0.41 8.09 -51.93 -0.42 -0.01 16 33 H 0.12 0.95 8.06 -52.48 -0.42 0.53 16 34 H 0.12 1.16 7.95 -52.48 -0.42 0.74 16 35 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.08 1.31 6.31 -51.93 -0.33 0.99 16 37 H 0.06 0.77 5.99 -51.93 -0.31 0.46 16 38 H 0.38 4.86 8.63 45.56 0.39 5.26 16 39 H 0.05 0.78 8.00 -51.93 -0.42 0.37 16 40 H 0.07 1.14 4.19 -51.93 -0.22 0.92 16 41 H 0.07 1.40 8.04 -51.92 -0.42 0.98 16 42 H 0.08 1.78 7.86 -51.93 -0.41 1.37 16 43 H 0.39 9.53 6.93 45.56 0.32 9.84 16 44 H 0.27 6.45 8.31 -40.82 -0.34 6.11 16 45 H 0.07 1.63 8.09 -51.93 -0.42 1.21 16 46 H 0.07 1.52 8.02 -51.93 -0.42 1.11 16 47 H 0.12 1.24 7.22 -52.49 -0.38 0.87 16 48 H 0.12 1.00 8.06 -52.49 -0.42 0.58 16 LS Contribution 381.38 15.07 5.75 5.75 Total: -1.00 -28.49 381.38 -9.25 -37.74 By element: Atomic # 1 Polarization: 23.64 SS G_CDS: -5.85 Total: 17.79 kcal Atomic # 6 Polarization: -4.43 SS G_CDS: -2.92 Total: -7.34 kcal Atomic # 7 Polarization: -33.62 SS G_CDS: 0.13 Total: -33.50 kcal Atomic # 8 Polarization: -33.83 SS G_CDS: -1.34 Total: -35.17 kcal Atomic # 14 Polarization: 19.75 SS G_CDS: -5.02 Total: 14.73 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -28.49 -9.25 -37.74 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592848490.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.554 kcal (2) G-P(sol) polarization free energy of solvation -28.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.741 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds