Wall clock time and date at job start Tue Mar 31 2020 18:43:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 O 1.42911 * 109.47170 * 2 1 4 4 C 1.52999 * 109.47167 * 240.00021 * 2 1 3 5 5 C 1.53001 * 109.47084 * 60.00032 * 4 2 1 6 6 C 1.50702 * 109.47225 * 180.02562 * 5 4 2 7 7 C 1.38234 * 120.00271 * 89.99331 * 6 5 4 8 8 C 1.38230 * 119.99880 * 179.97438 * 7 6 5 9 9 C 1.38235 * 120.00326 * 359.97438 * 8 7 6 10 10 C 1.38234 * 119.99814 * 359.97438 * 9 8 7 11 11 C 1.38234 * 119.99485 * 269.97459 * 6 5 4 12 12 C 1.50699 * 109.47266 * 119.99674 * 2 1 3 13 13 O 1.21279 * 119.99391 * 95.00436 * 12 2 1 14 14 N 1.34779 * 120.00103 * 274.99771 * 12 2 1 15 15 C 1.47020 * 125.64799 * 359.69785 * 14 12 2 16 16 C 1.54332 * 107.26598 * 178.84560 * 15 14 12 17 17 C 1.55163 * 103.01992 * 338.14136 * 16 15 14 18 18 O 1.42904 * 110.99887 * 277.23336 * 17 16 15 19 19 C 1.50698 * 111.03884 * 153.39528 * 17 16 15 20 20 H 1.08000 * 120.00089 * 247.78292 * 19 17 16 21 21 C 1.37883 * 120.00010 * 67.78447 * 19 17 16 22 22 N 1.31518 * 119.99539 * 359.97438 * 21 19 17 23 23 Si 1.86789 * 120.00003 * 180.02562 * 21 19 17 24 24 H 1.48503 * 109.47355 * 359.97438 * 23 21 19 25 25 H 1.48502 * 109.47139 * 119.99793 * 23 21 19 26 26 H 1.48503 * 109.47408 * 239.99994 * 23 21 19 27 27 C 1.47419 * 125.64671 * 179.97438 * 14 12 2 28 28 H 1.08997 * 109.47646 * 180.02562 * 1 2 3 29 29 H 1.09006 * 109.47120 * 300.00374 * 1 2 3 30 30 H 1.09002 * 109.47658 * 59.99867 * 1 2 3 31 31 H 0.96691 * 114.00206 * 180.02562 * 3 2 1 32 32 H 1.08991 * 109.46904 * 300.00062 * 4 2 1 33 33 H 1.09004 * 109.47138 * 179.97438 * 4 2 1 34 34 H 1.09003 * 109.47380 * 59.99807 * 5 4 2 35 35 H 1.09009 * 109.47137 * 299.99891 * 5 4 2 36 36 H 1.08001 * 119.99769 * 359.97438 * 7 6 5 37 37 H 1.08000 * 120.00376 * 180.02562 * 8 7 6 38 38 H 1.08000 * 120.00616 * 179.72578 * 9 8 7 39 39 H 1.08001 * 120.00299 * 179.97438 * 10 9 8 40 40 H 1.07997 * 120.00489 * 0.02562 * 11 6 5 41 41 H 1.08999 * 109.88281 * 298.38722 * 15 14 12 42 42 H 1.09004 * 109.88306 * 59.55551 * 15 14 12 43 43 H 1.09000 * 110.85233 * 219.67026 * 16 15 14 44 44 H 1.09000 * 110.51689 * 96.44501 * 16 15 14 45 45 H 0.96708 * 114.00151 * 292.19298 * 18 17 16 46 46 H 0.97005 * 119.99253 * 179.97438 * 22 21 19 47 47 H 1.09004 * 110.37175 * 322.93684 * 27 14 12 48 48 H 1.09000 * 110.36731 * 85.25572 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3474 0.0000 4 6 2.0399 -0.7212 -1.2492 5 6 1.5299 0.0000 -2.4985 6 6 2.0318 -0.7107 -3.7290 7 6 1.2843 -1.7276 -4.2930 8 6 1.7444 -2.3791 -5.4220 9 6 2.9517 -2.0135 -5.9873 10 6 3.6987 -0.9959 -5.4239 11 6 3.2394 -0.3454 -4.2938 12 6 2.0323 -0.7103 1.2305 13 8 2.3208 -1.8870 1.1759 14 7 2.1611 -0.0379 2.3914 15 6 1.8549 1.3855 2.5957 16 6 2.1249 1.7035 4.0816 17 6 2.0358 0.3103 4.7590 18 8 0.6776 -0.0410 5.0308 19 6 2.8643 0.2665 6.0170 20 1 3.7482 -0.3526 6.0603 21 6 2.4938 1.0168 7.1130 22 7 1.4177 1.7710 7.0601 23 14 3.5211 0.9630 8.6721 24 1 4.6719 0.0453 8.4753 25 1 4.0218 2.3262 8.9822 26 1 2.6860 0.4742 9.7986 27 6 2.6377 -0.6065 3.6653 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 2.9702 1.4237 -0.0004 32 1 1.6766 -1.7488 -1.2492 33 1 3.1300 -0.7208 -1.2495 34 1 1.8932 1.0277 -2.4985 35 1 0.4399 0.0000 -2.4985 36 1 0.3409 -2.0130 -3.8515 37 1 1.1603 -3.1733 -5.8629 38 1 3.3134 -2.5255 -6.8668 39 1 4.6421 -0.7104 -5.8653 40 1 3.8234 0.4489 -3.8532 41 1 2.4961 1.9974 1.9613 42 1 0.8075 1.5766 2.3620 43 1 1.3640 2.3750 4.4791 44 1 3.1203 2.1298 4.2063 45 1 0.2581 0.5058 5.7093 46 1 1.1569 2.2985 7.8312 47 1 2.2751 -1.6275 3.7844 48 1 3.7266 -0.5826 3.7076 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592851575.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:43:37 Heat of formation + Delta-G solvation = -117.237938 kcal Electronic energy + Delta-G solvation = -29130.034895 eV Core-core repulsion = 25149.349165 eV Total energy + Delta-G solvation = -3980.685731 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.26670 -39.37691 -37.73398 -36.73767 -34.50151 -33.87593 -32.15475 -31.46699 -31.07103 -29.82710 -28.52441 -28.08829 -25.68053 -24.89940 -22.88271 -22.75429 -21.57392 -20.57226 -19.74371 -19.24845 -17.46698 -17.09786 -16.97130 -15.84589 -15.74347 -15.44295 -15.21869 -15.03016 -14.95979 -14.51622 -14.18623 -13.68353 -13.52705 -13.35643 -13.24685 -13.01470 -12.85246 -12.71547 -12.38917 -12.17300 -12.09949 -11.82018 -11.67871 -11.44709 -11.37819 -11.34842 -11.29406 -11.14752 -10.88489 -10.84140 -10.58069 -10.47983 -10.35180 -10.03322 -9.44248 -9.12869 -9.10869 -8.80805 -8.68703 -8.21161 -7.97054 -6.31971 -4.39544 1.16877 1.21212 2.91822 3.16715 3.25904 3.29787 3.42081 3.63179 4.14050 4.24295 4.51340 4.62409 4.69562 4.80060 4.90906 4.91113 4.96469 5.06953 5.18815 5.30974 5.35912 5.44254 5.56516 5.61242 5.72150 5.77967 5.79280 5.81447 5.88207 5.90896 5.97511 6.09613 6.15532 6.20536 6.27935 6.31969 6.38504 6.43808 6.48871 6.64937 6.82556 6.89746 6.95971 7.30598 7.32733 7.45378 7.71804 7.97122 8.12417 8.55701 8.63362 9.29453 9.46204 10.75733 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.031245 B = 0.002291 C = 0.002270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 895.919555 B =12217.836009 C =12331.300741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.126 3.874 3 O -0.544 6.544 4 C -0.121 4.121 5 C -0.078 4.078 6 C -0.076 4.076 7 C -0.117 4.117 8 C -0.119 4.119 9 C -0.129 4.129 10 C -0.120 4.120 11 C -0.118 4.118 12 C 0.496 3.504 13 O -0.553 6.553 14 N -0.595 5.595 15 C 0.109 3.891 16 C -0.143 4.143 17 C 0.249 3.751 18 O -0.585 6.585 19 C -0.534 4.534 20 H 0.065 0.935 21 C 0.071 3.929 22 N -0.897 5.897 23 Si 0.904 3.096 24 H -0.271 1.271 25 H -0.282 1.282 26 H -0.282 1.282 27 C 0.116 3.884 28 H 0.074 0.926 29 H 0.071 0.929 30 H 0.075 0.925 31 H 0.378 0.622 32 H 0.084 0.916 33 H 0.068 0.932 34 H 0.080 0.920 35 H 0.076 0.924 36 H 0.122 0.878 37 H 0.120 0.880 38 H 0.118 0.882 39 H 0.120 0.880 40 H 0.121 0.879 41 H 0.064 0.936 42 H 0.058 0.942 43 H 0.081 0.919 44 H 0.065 0.935 45 H 0.385 0.615 46 H 0.269 0.731 47 H 0.069 0.931 48 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.378 -0.155 -21.110 21.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.083 3.917 3 O -0.350 6.350 4 C -0.160 4.160 5 C -0.116 4.116 6 C -0.076 4.076 7 C -0.135 4.135 8 C -0.137 4.137 9 C -0.147 4.147 10 C -0.138 4.138 11 C -0.136 4.136 12 C 0.282 3.718 13 O -0.432 6.432 14 N -0.327 5.327 15 C -0.013 4.013 16 C -0.182 4.182 17 C 0.208 3.792 18 O -0.395 6.395 19 C -0.573 4.573 20 H 0.083 0.917 21 C -0.131 4.131 22 N -0.537 5.537 23 Si 0.731 3.269 24 H -0.196 1.196 25 H -0.208 1.208 26 H -0.208 1.208 27 C -0.006 4.006 28 H 0.093 0.907 29 H 0.090 0.910 30 H 0.094 0.906 31 H 0.225 0.775 32 H 0.103 0.897 33 H 0.087 0.913 34 H 0.099 0.901 35 H 0.095 0.905 36 H 0.140 0.860 37 H 0.138 0.862 38 H 0.136 0.864 39 H 0.138 0.862 40 H 0.139 0.861 41 H 0.082 0.918 42 H 0.076 0.924 43 H 0.100 0.900 44 H 0.084 0.916 45 H 0.238 0.762 46 H 0.079 0.921 47 H 0.088 0.912 48 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -0.107 -0.995 -21.541 21.564 hybrid contribution 1.048 0.373 1.365 1.761 sum 0.941 -0.622 -20.176 20.207 Atomic orbital electron populations 1.21775 0.90857 1.03157 1.03791 1.21337 0.96528 0.82251 0.91623 1.86611 1.26893 1.24820 1.96695 1.21997 1.01372 1.00552 0.92040 1.20637 1.01227 0.99154 0.90549 1.19973 0.94776 0.96377 0.96522 1.21099 1.00107 0.96113 0.96213 1.21146 0.96464 0.99785 0.96324 1.21128 0.95345 0.97942 1.00300 1.21145 0.99745 0.96540 0.96340 1.21086 0.95929 1.00316 0.96239 1.20944 0.79026 0.87233 0.84561 1.90670 1.51554 1.15960 1.85045 1.48638 1.62712 1.11993 1.09347 1.22234 1.00017 0.80425 0.98666 1.23261 1.02051 1.01545 0.91352 1.19572 0.81338 0.87567 0.90702 1.86094 1.27155 1.63186 1.63087 1.21518 1.11029 1.27228 0.97493 0.91659 1.25000 0.95144 0.93966 0.98980 1.69578 1.24520 1.28386 1.31206 0.86345 0.80203 0.77924 0.82400 1.19587 1.20803 1.20758 1.22417 0.97868 0.98794 0.81480 0.90690 0.91036 0.90649 0.77453 0.89739 0.91331 0.90143 0.90508 0.86041 0.86210 0.86351 0.86235 0.86097 0.91769 0.92369 0.89996 0.91589 0.76242 0.92126 0.91222 0.91169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.76 8.47 37.15 0.31 -1.44 16 2 C 0.13 1.71 0.78 -91.78 -0.07 1.64 16 3 O -0.54 -6.57 9.36 -35.23 -0.33 -6.90 16 4 C -0.12 -1.45 3.97 -26.73 -0.11 -1.56 16 5 C -0.08 -0.76 4.85 -27.88 -0.14 -0.90 16 6 C -0.08 -0.77 5.13 -104.62 -0.54 -1.31 16 7 C -0.12 -1.14 9.70 -39.59 -0.38 -1.53 16 8 C -0.12 -1.07 10.05 -39.59 -0.40 -1.46 16 9 C -0.13 -1.12 10.05 -39.58 -0.40 -1.52 16 10 C -0.12 -1.06 10.05 -39.58 -0.40 -1.46 16 11 C -0.12 -1.13 9.70 -39.58 -0.38 -1.51 16 12 C 0.50 9.06 6.75 -10.98 -0.07 8.99 16 13 O -0.55 -11.86 16.35 5.56 0.09 -11.76 16 14 N -0.60 -11.56 3.33 -170.53 -0.57 -12.13 16 15 C 0.11 1.96 5.59 -3.06 -0.02 1.94 16 16 C -0.14 -3.05 5.64 -24.89 -0.14 -3.19 16 17 C 0.25 5.97 0.89 -89.63 -0.08 5.89 16 18 O -0.58 -15.02 13.18 -35.23 -0.46 -15.49 16 19 C -0.53 -13.78 8.25 -34.44 -0.28 -14.07 16 20 H 0.07 1.68 7.77 -52.49 -0.41 1.27 16 21 C 0.07 1.82 5.30 -17.82 -0.09 1.72 16 22 N -0.90 -22.94 10.79 55.43 0.60 -22.35 16 23 Si 0.90 20.03 29.54 -169.99 -5.02 15.01 16 24 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 25 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 26 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 27 C 0.12 2.59 6.08 -2.54 -0.02 2.57 16 28 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 29 H 0.07 1.01 7.24 -51.93 -0.38 0.63 16 30 H 0.07 0.78 6.43 -51.93 -0.33 0.45 16 31 H 0.38 3.66 8.71 45.56 0.40 4.05 16 32 H 0.08 1.13 7.87 -51.93 -0.41 0.72 16 33 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 34 H 0.08 0.75 7.63 -51.93 -0.40 0.35 16 35 H 0.08 0.70 6.37 -51.92 -0.33 0.37 16 36 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 37 H 0.12 0.83 8.06 -52.49 -0.42 0.41 16 38 H 0.12 0.77 8.06 -52.49 -0.42 0.35 16 39 H 0.12 0.82 8.06 -52.49 -0.42 0.40 16 40 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16 41 H 0.06 0.99 6.40 -51.93 -0.33 0.66 16 42 H 0.06 1.05 7.24 -51.93 -0.38 0.67 16 43 H 0.08 1.84 7.85 -51.93 -0.41 1.43 16 44 H 0.07 1.39 8.03 -51.93 -0.42 0.98 16 45 H 0.39 9.99 6.93 45.56 0.32 10.31 16 46 H 0.27 6.57 8.31 -40.82 -0.34 6.23 16 47 H 0.07 1.67 8.04 -51.93 -0.42 1.25 16 48 H 0.07 1.51 8.01 -51.93 -0.42 1.09 16 LS Contribution 384.51 15.07 5.79 5.79 Total: -1.00 -29.45 384.51 -9.10 -38.55 By element: Atomic # 1 Polarization: 22.46 SS G_CDS: -6.00 Total: 16.46 kcal Atomic # 6 Polarization: -3.98 SS G_CDS: -3.20 Total: -7.18 kcal Atomic # 7 Polarization: -34.51 SS G_CDS: 0.03 Total: -34.48 kcal Atomic # 8 Polarization: -33.45 SS G_CDS: -0.70 Total: -34.15 kcal Atomic # 14 Polarization: 20.03 SS G_CDS: -5.02 Total: 15.01 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -29.45 -9.10 -38.55 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592851575.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.685 kcal (2) G-P(sol) polarization free energy of solvation -29.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.552 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds