Wall clock time and date at job start Tue Mar 31 2020 18:43:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 O 1.42911 * 109.47170 * 2 1 4 4 C 1.52999 * 109.47167 * 240.00021 * 2 1 3 5 5 C 1.53001 * 109.47084 * 60.00032 * 4 2 1 6 6 C 1.50702 * 109.47225 * 180.02562 * 5 4 2 7 7 C 1.38234 * 120.00271 * 89.99331 * 6 5 4 8 8 C 1.38230 * 119.99880 * 179.97438 * 7 6 5 9 9 C 1.38235 * 120.00326 * 359.97438 * 8 7 6 10 10 C 1.38234 * 119.99814 * 359.97438 * 9 8 7 11 11 C 1.38234 * 119.99485 * 269.97459 * 6 5 4 12 12 C 1.50699 * 109.47266 * 119.99674 * 2 1 3 13 13 O 1.21279 * 119.99391 * 95.00436 * 12 2 1 14 14 N 1.34779 * 120.00103 * 274.99771 * 12 2 1 15 15 C 1.47020 * 125.64799 * 359.69785 * 14 12 2 16 16 C 1.54332 * 107.26598 * 178.84560 * 15 14 12 17 17 C 1.55163 * 103.01992 * 338.14136 * 16 15 14 18 18 O 1.42904 * 110.99887 * 277.23336 * 17 16 15 19 19 C 1.50698 * 111.03884 * 153.39528 * 17 16 15 20 20 H 1.08000 * 120.00089 * 247.78292 * 19 17 16 21 21 C 1.37883 * 120.00010 * 67.78447 * 19 17 16 22 22 N 1.31518 * 119.99539 * 359.97438 * 21 19 17 23 23 Si 1.86789 * 120.00003 * 180.02562 * 21 19 17 24 24 H 1.48503 * 109.47355 * 359.97438 * 23 21 19 25 25 H 1.48502 * 109.47139 * 119.99793 * 23 21 19 26 26 H 1.48503 * 109.47408 * 239.99994 * 23 21 19 27 27 C 1.47419 * 125.64671 * 179.97438 * 14 12 2 28 28 H 1.08997 * 109.47646 * 180.02562 * 1 2 3 29 29 H 1.09006 * 109.47120 * 300.00374 * 1 2 3 30 30 H 1.09002 * 109.47658 * 59.99867 * 1 2 3 31 31 H 0.96691 * 114.00206 * 180.02562 * 3 2 1 32 32 H 1.08991 * 109.46904 * 300.00062 * 4 2 1 33 33 H 1.09004 * 109.47138 * 179.97438 * 4 2 1 34 34 H 1.09003 * 109.47380 * 59.99807 * 5 4 2 35 35 H 1.09009 * 109.47137 * 299.99891 * 5 4 2 36 36 H 1.08001 * 119.99769 * 359.97438 * 7 6 5 37 37 H 1.08000 * 120.00376 * 180.02562 * 8 7 6 38 38 H 1.08000 * 120.00616 * 179.72578 * 9 8 7 39 39 H 1.08001 * 120.00299 * 179.97438 * 10 9 8 40 40 H 1.07997 * 120.00489 * 0.02562 * 11 6 5 41 41 H 1.08999 * 109.88281 * 298.38722 * 15 14 12 42 42 H 1.09004 * 109.88306 * 59.55551 * 15 14 12 43 43 H 1.09000 * 110.85233 * 219.67026 * 16 15 14 44 44 H 1.09000 * 110.51689 * 96.44501 * 16 15 14 45 45 H 0.96708 * 114.00151 * 292.19298 * 18 17 16 46 46 H 0.97005 * 119.99253 * 179.97438 * 22 21 19 47 47 H 1.09004 * 110.37175 * 322.93684 * 27 14 12 48 48 H 1.09000 * 110.36731 * 85.25572 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3474 0.0000 4 6 2.0399 -0.7212 -1.2492 5 6 1.5299 0.0000 -2.4985 6 6 2.0318 -0.7107 -3.7290 7 6 1.2843 -1.7276 -4.2930 8 6 1.7444 -2.3791 -5.4220 9 6 2.9517 -2.0135 -5.9873 10 6 3.6987 -0.9959 -5.4239 11 6 3.2394 -0.3454 -4.2938 12 6 2.0323 -0.7103 1.2305 13 8 2.3208 -1.8870 1.1759 14 7 2.1611 -0.0379 2.3914 15 6 1.8549 1.3855 2.5957 16 6 2.1249 1.7035 4.0816 17 6 2.0358 0.3103 4.7590 18 8 0.6776 -0.0410 5.0308 19 6 2.8643 0.2665 6.0170 20 1 3.7482 -0.3526 6.0603 21 6 2.4938 1.0168 7.1130 22 7 1.4177 1.7710 7.0601 23 14 3.5211 0.9630 8.6721 24 1 4.6719 0.0453 8.4753 25 1 4.0218 2.3262 8.9822 26 1 2.6860 0.4742 9.7986 27 6 2.6377 -0.6065 3.6653 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 2.9702 1.4237 -0.0004 32 1 1.6766 -1.7488 -1.2492 33 1 3.1300 -0.7208 -1.2495 34 1 1.8932 1.0277 -2.4985 35 1 0.4399 0.0000 -2.4985 36 1 0.3409 -2.0130 -3.8515 37 1 1.1603 -3.1733 -5.8629 38 1 3.3134 -2.5255 -6.8668 39 1 4.6421 -0.7104 -5.8653 40 1 3.8234 0.4489 -3.8532 41 1 2.4961 1.9974 1.9613 42 1 0.8075 1.5766 2.3620 43 1 1.3640 2.3750 4.4791 44 1 3.1203 2.1298 4.2063 45 1 0.2581 0.5058 5.7093 46 1 1.1569 2.2985 7.8312 47 1 2.2751 -1.6275 3.7844 48 1 3.7266 -0.5826 3.7076 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592851575.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:43:36 Heat of formation + Delta-G solvation = -136.476623 kcal Electronic energy + Delta-G solvation = -29130.869147 eV Core-core repulsion = 25149.349165 eV Total energy + Delta-G solvation = -3981.519983 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.60676 -40.16300 -39.27190 -38.08206 -36.15982 -34.86034 -34.14524 -32.43154 -31.72086 -31.48021 -30.05150 -29.18962 -27.29248 -26.11657 -24.26597 -23.41331 -22.73003 -21.66646 -21.30441 -20.61476 -19.21857 -18.65241 -17.67017 -17.09311 -16.93236 -16.83892 -16.71813 -16.34835 -16.07830 -15.68736 -15.61045 -15.14746 -14.71730 -14.41443 -14.26873 -14.01428 -14.00455 -13.83827 -13.67575 -13.58916 -13.41502 -13.23606 -13.15294 -13.05264 -12.78018 -12.64365 -12.48895 -12.39161 -12.26083 -12.09611 -11.93739 -11.82912 -11.63857 -11.40540 -11.30592 -10.69493 -10.43736 -10.13886 -9.77712 -9.57138 -9.53701 -8.26094 -6.40592 0.48654 0.54451 1.40253 1.44451 1.46815 1.54709 1.99037 2.39083 2.91168 2.98686 3.13894 3.39134 3.61603 3.80115 3.86535 4.04447 4.06942 4.14277 4.22290 4.32546 4.35962 4.37367 4.42421 4.47295 4.59058 4.67143 4.69027 4.70587 4.73068 4.81523 4.88024 4.93731 5.02556 5.16043 5.17279 5.20405 5.25452 5.27757 5.35352 5.45178 5.53249 5.62219 5.66810 5.77086 5.78677 6.04405 6.18000 6.48401 6.62640 6.66692 7.08073 7.30678 7.43997 8.80447 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.031245 B = 0.002291 C = 0.002270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 895.919555 B =12217.836009 C =12331.300741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.143 3.857 3 O -0.539 6.539 4 C -0.111 4.111 5 C -0.067 4.067 6 C -0.092 4.092 7 C -0.133 4.133 8 C -0.130 4.130 9 C -0.136 4.136 10 C -0.129 4.129 11 C -0.130 4.130 12 C 0.490 3.510 13 O -0.589 6.589 14 N -0.599 5.599 15 C 0.121 3.879 16 C -0.134 4.134 17 C 0.234 3.766 18 O -0.597 6.597 19 C -0.559 4.559 20 H 0.056 0.944 21 C 0.034 3.966 22 N -0.910 5.910 23 Si 0.962 3.038 24 H -0.273 1.273 25 H -0.274 1.274 26 H -0.281 1.281 27 C 0.120 3.880 28 H 0.071 0.929 29 H 0.056 0.944 30 H 0.104 0.896 31 H 0.391 0.609 32 H 0.067 0.933 33 H 0.064 0.936 34 H 0.089 0.911 35 H 0.084 0.916 36 H 0.129 0.871 37 H 0.136 0.864 38 H 0.138 0.862 39 H 0.138 0.862 40 H 0.132 0.868 41 H 0.099 0.901 42 H 0.062 0.938 43 H 0.068 0.932 44 H 0.065 0.935 45 H 0.381 0.619 46 H 0.272 0.728 47 H 0.043 0.957 48 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.780 0.974 -22.762 22.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.099 3.901 3 O -0.347 6.347 4 C -0.149 4.149 5 C -0.104 4.104 6 C -0.092 4.092 7 C -0.151 4.151 8 C -0.147 4.147 9 C -0.154 4.154 10 C -0.147 4.147 11 C -0.148 4.148 12 C 0.278 3.722 13 O -0.470 6.470 14 N -0.330 5.330 15 C -0.001 4.001 16 C -0.173 4.173 17 C 0.194 3.806 18 O -0.407 6.407 19 C -0.598 4.598 20 H 0.074 0.926 21 C -0.167 4.167 22 N -0.550 5.550 23 Si 0.788 3.212 24 H -0.198 1.198 25 H -0.200 1.200 26 H -0.207 1.207 27 C -0.002 4.002 28 H 0.090 0.910 29 H 0.075 0.925 30 H 0.123 0.877 31 H 0.241 0.759 32 H 0.086 0.914 33 H 0.083 0.917 34 H 0.108 0.892 35 H 0.103 0.897 36 H 0.147 0.853 37 H 0.154 0.846 38 H 0.156 0.844 39 H 0.155 0.845 40 H 0.150 0.850 41 H 0.117 0.883 42 H 0.080 0.920 43 H 0.086 0.914 44 H 0.084 0.916 45 H 0.232 0.768 46 H 0.082 0.918 47 H 0.061 0.939 48 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 0.299 0.156 -23.214 23.217 hybrid contribution 0.935 -0.033 1.869 2.090 sum 1.235 0.123 -21.346 21.382 Atomic orbital electron populations 1.21820 0.90009 1.03282 1.04510 1.21193 0.96940 0.82528 0.89486 1.86595 1.28287 1.23434 1.96396 1.21893 1.01071 0.99697 0.92287 1.20545 1.01608 0.99121 0.89132 1.20079 0.95313 0.96918 0.96903 1.21329 1.00642 0.96350 0.96737 1.21438 0.96910 1.00172 0.96227 1.21458 0.95201 0.97882 1.00869 1.21453 1.00542 0.96475 0.96234 1.21328 0.95998 1.00830 0.96653 1.22001 0.77818 0.87021 0.85314 1.90648 1.52899 1.17812 1.85684 1.48715 1.62957 1.12509 1.08808 1.22217 1.01057 0.79889 0.96927 1.23068 1.01521 0.99459 0.93259 1.19774 0.80297 0.89606 0.90926 1.86083 1.28172 1.63517 1.62915 1.21729 1.11323 1.27751 0.98963 0.92561 1.25640 0.96137 0.93593 1.01324 1.69639 1.25072 1.28342 1.31907 0.85442 0.78694 0.78032 0.79025 1.19772 1.19965 1.20709 1.22183 0.97911 0.97211 0.82934 0.90986 0.92452 0.87718 0.75920 0.91435 0.91712 0.89221 0.89709 0.85349 0.84577 0.84401 0.84450 0.85036 0.88280 0.91976 0.91376 0.91630 0.76755 0.91809 0.93880 0.90826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.28 8.47 71.98 0.61 -2.67 16 2 C 0.14 3.62 0.78 -11.54 -0.01 3.61 16 3 O -0.54 -11.41 9.36 -148.98 -1.39 -12.80 16 4 C -0.11 -2.50 3.97 30.59 0.12 -2.38 16 5 C -0.07 -1.15 4.85 29.85 0.14 -1.01 16 6 C -0.09 -1.71 5.13 -19.87 -0.10 -1.81 16 7 C -0.13 -2.41 9.70 22.27 0.22 -2.19 16 8 C -0.13 -2.13 10.05 22.27 0.22 -1.90 16 9 C -0.14 -2.11 10.05 22.27 0.22 -1.89 16 10 C -0.13 -2.06 10.05 22.27 0.22 -1.83 16 11 C -0.13 -2.27 9.70 22.27 0.22 -2.06 16 12 C 0.49 17.69 6.75 87.66 0.59 18.28 16 13 O -0.59 -25.60 16.35 -3.03 -0.05 -25.65 16 14 N -0.60 -23.03 3.33 -811.83 -2.70 -25.73 16 15 C 0.12 4.16 5.59 86.73 0.49 4.65 16 16 C -0.13 -5.66 5.64 31.79 0.18 -5.49 16 17 C 0.23 11.42 0.89 -10.15 -0.01 11.41 16 18 O -0.60 -31.38 13.18 -148.98 -1.96 -33.34 16 19 C -0.56 -29.30 8.25 25.60 0.21 -29.09 16 20 H 0.06 2.96 7.77 -2.91 -0.02 2.94 16 21 C 0.03 1.73 5.30 84.66 0.45 2.18 16 22 N -0.91 -46.59 10.79 21.45 0.23 -46.36 16 23 Si 0.96 41.00 29.54 68.60 2.03 43.03 16 24 H -0.27 -11.61 7.11 99.48 0.71 -10.91 16 25 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 26 H -0.28 -11.91 7.11 99.48 0.71 -11.20 16 27 C 0.12 5.49 6.08 86.85 0.53 6.01 16 28 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 29 H 0.06 1.53 7.24 -2.38 -0.02 1.51 16 30 H 0.10 1.86 6.43 -2.39 -0.02 1.84 16 31 H 0.39 6.26 8.71 -74.06 -0.65 5.61 16 32 H 0.07 1.77 7.87 -2.39 -0.02 1.75 16 33 H 0.06 1.50 8.14 -2.38 -0.02 1.48 16 34 H 0.09 1.40 7.63 -2.39 -0.02 1.38 16 35 H 0.08 1.32 6.37 -2.38 -0.02 1.31 16 36 H 0.13 2.03 8.06 -2.91 -0.02 2.00 16 37 H 0.14 1.66 8.06 -2.91 -0.02 1.64 16 38 H 0.14 1.49 8.06 -2.91 -0.02 1.47 16 39 H 0.14 1.59 8.06 -2.91 -0.02 1.56 16 40 H 0.13 1.90 8.06 -2.91 -0.02 1.87 16 41 H 0.10 2.75 6.40 -2.39 -0.02 2.74 16 42 H 0.06 2.13 7.24 -2.38 -0.02 2.11 16 43 H 0.07 3.05 7.85 -2.39 -0.02 3.03 16 44 H 0.06 2.73 8.03 -2.39 -0.02 2.71 16 45 H 0.38 20.24 6.93 -74.05 -0.51 19.73 16 46 H 0.27 13.21 8.31 -92.70 -0.77 12.44 16 47 H 0.04 2.15 8.04 -2.39 -0.02 2.13 16 48 H 0.07 3.24 8.01 -2.39 -0.02 3.22 16 Total: -1.00 -63.81 384.51 0.27 -63.53 By element: Atomic # 1 Polarization: 43.68 SS G_CDS: -0.18 Total: 43.50 kcal Atomic # 6 Polarization: -10.48 SS G_CDS: 4.30 Total: -6.17 kcal Atomic # 7 Polarization: -69.62 SS G_CDS: -2.47 Total: -72.09 kcal Atomic # 8 Polarization: -68.39 SS G_CDS: -3.41 Total: -71.79 kcal Atomic # 14 Polarization: 41.00 SS G_CDS: 2.03 Total: 43.03 kcal Total: -63.81 0.27 -63.53 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592851575.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.944 kcal (2) G-P(sol) polarization free energy of solvation -63.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.533 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds