Wall clock time and date at job start Tue Mar 31 2020 18:43:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 O 1.42897 * 109.47296 * 2 1 4 4 C 1.53001 * 109.47264 * 239.99327 * 2 1 3 5 5 C 1.53003 * 109.46789 * 60.00477 * 4 2 1 6 6 C 1.50707 * 109.46826 * 179.97438 * 5 4 2 7 7 C 1.38236 * 120.00030 * 269.72411 * 6 5 4 8 8 C 1.38236 * 119.99708 * 179.81329 * 7 6 5 9 9 C 1.38232 * 119.99839 * 0.39938 * 8 7 6 10 10 C 1.38233 * 120.00340 * 359.85611 * 9 8 7 11 11 C 1.38234 * 119.99490 * 90.00393 * 6 5 4 12 12 C 1.50705 * 109.46945 * 119.99799 * 2 1 3 13 13 O 1.21281 * 119.99998 * 95.00205 * 12 2 1 14 14 N 1.34777 * 119.99880 * 275.00162 * 12 2 1 15 15 C 1.47419 * 125.64791 * 0.02562 * 14 12 2 16 16 C 1.54914 * 104.83401 * 155.83760 * 15 14 12 17 17 C 1.55157 * 101.57895 * 37.00788 * 16 15 14 18 18 O 1.42897 * 110.71976 * 83.04069 * 17 16 15 19 19 C 1.50701 * 110.72362 * 206.13513 * 17 16 15 20 20 H 1.08002 * 119.99761 * 118.54298 * 19 17 16 21 21 C 1.37871 * 119.99694 * 298.82861 * 19 17 16 22 22 N 1.31514 * 120.00482 * 359.71466 * 21 19 17 23 23 Si 1.86801 * 119.99746 * 179.72062 * 21 19 17 24 24 H 1.48504 * 109.47209 * 89.99886 * 23 21 19 25 25 H 1.48501 * 109.47358 * 209.99377 * 23 21 19 26 26 H 1.48496 * 109.47341 * 329.99989 * 23 21 19 27 27 C 1.47022 * 125.64899 * 179.97438 * 14 12 2 28 28 H 1.08992 * 109.47810 * 300.00544 * 1 2 3 29 29 H 1.09002 * 109.47117 * 60.00475 * 1 2 3 30 30 H 1.09003 * 109.47394 * 180.02562 * 1 2 3 31 31 H 0.96703 * 113.99876 * 180.02562 * 3 2 1 32 32 H 1.09000 * 109.46944 * 179.97438 * 4 2 1 33 33 H 1.08991 * 109.47511 * 300.00171 * 4 2 1 34 34 H 1.08998 * 109.47169 * 299.99847 * 5 4 2 35 35 H 1.09003 * 109.47069 * 59.99910 * 5 4 2 36 36 H 1.08001 * 119.99850 * 0.02562 * 7 6 5 37 37 H 1.07997 * 119.99659 * 180.23273 * 8 7 6 38 38 H 1.08000 * 119.99512 * 179.83787 * 9 8 7 39 39 H 1.08000 * 120.00337 * 179.97438 * 10 9 8 40 40 H 1.07995 * 120.00613 * 359.97127 * 11 6 5 41 41 H 1.09004 * 110.37070 * 37.00217 * 15 14 12 42 42 H 1.08999 * 110.46046 * 274.72158 * 15 14 12 43 43 H 1.09000 * 111.00326 * 278.93651 * 16 15 14 44 44 H 1.08991 * 111.00438 * 155.08249 * 16 15 14 45 45 H 0.96697 * 114.00521 * 63.84056 * 18 17 16 46 46 H 0.96995 * 120.00207 * 179.97438 * 22 21 19 47 47 H 1.09008 * 109.88024 * 61.67334 * 27 14 12 48 48 H 1.08998 * 109.87947 * 300.51423 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 2.0400 -0.7214 -1.2492 5 6 1.5300 -0.0002 -2.4985 6 6 2.0329 -0.7104 -3.7289 7 6 3.2381 -0.3408 -4.2962 8 6 3.7012 -0.9948 -5.4226 9 6 2.9552 -2.0129 -5.9863 10 6 1.7475 -2.3789 -5.4221 11 6 1.2862 -1.7275 -4.2935 12 6 2.0322 -0.7104 1.2305 13 8 2.3207 -1.8871 1.1761 14 7 2.1609 -0.0380 2.3915 15 6 1.8474 1.3876 2.5980 16 6 1.5563 1.5141 4.1142 17 6 2.5895 0.5237 4.7134 18 8 3.8681 1.1471 4.8484 19 6 2.1132 -0.0048 6.0419 20 1 1.9388 -1.0628 6.1710 21 6 1.8946 0.8630 7.0907 22 7 2.1070 2.1513 6.9334 23 14 1.2969 0.2089 8.7351 24 1 2.4649 -0.1323 9.5863 25 1 0.4773 1.2459 9.4121 26 1 0.4732 -1.0068 8.5145 27 6 2.6361 -0.6050 3.6620 28 1 -0.3634 0.5139 0.8898 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 2.9703 1.4235 -0.0004 32 1 3.1300 -0.7210 -1.2493 33 1 1.6767 -1.7490 -1.2491 34 1 0.4401 -0.0001 -2.4985 35 1 1.8934 1.0275 -2.4985 36 1 3.8195 0.4567 -3.8574 37 1 4.6445 -0.7086 -5.8636 38 1 3.3158 -2.5221 -6.8679 39 1 1.1644 -3.1740 -5.8628 40 1 0.3427 -2.0135 -3.8526 41 1 0.9688 1.6707 2.0182 42 1 2.6994 2.0089 2.3222 43 1 0.5374 1.2022 4.3438 44 1 1.7405 2.5298 4.4640 45 1 3.8807 1.8884 5.4692 46 1 1.9529 2.7619 7.6712 47 1 3.6593 -0.9636 3.5482 48 1 1.9859 -1.4244 3.9684 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592851580.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:43:45 Heat of formation + Delta-G solvation = -118.007990 kcal Electronic energy + Delta-G solvation = -29118.415514 eV Core-core repulsion = 25137.696391 eV Total energy + Delta-G solvation = -3980.719123 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.28161 -39.38105 -37.76699 -36.75454 -34.50927 -33.88733 -32.23040 -31.47487 -31.07141 -29.72116 -28.57724 -28.09035 -25.68041 -24.89981 -22.87134 -22.75488 -21.63096 -20.62709 -19.75368 -19.14771 -17.51895 -17.07337 -16.95122 -15.95325 -15.74278 -15.44585 -15.28898 -14.98984 -14.92640 -14.46347 -14.19099 -13.83069 -13.58165 -13.34547 -13.10217 -13.00291 -12.97297 -12.57576 -12.38478 -12.27161 -12.05656 -11.81501 -11.68536 -11.43463 -11.37806 -11.35836 -11.33042 -11.14717 -10.89037 -10.84978 -10.58716 -10.49898 -10.37049 -10.11447 -9.39889 -9.13529 -9.10909 -8.81142 -8.67096 -8.22444 -8.02374 -6.30169 -4.38011 1.16811 1.21176 2.90420 3.18987 3.26299 3.29231 3.39551 3.62574 4.13668 4.25376 4.50308 4.61811 4.68362 4.79985 4.89746 4.90862 4.97239 5.05703 5.17130 5.30299 5.35363 5.43548 5.54770 5.62964 5.69335 5.73899 5.76750 5.79594 5.87983 5.90300 6.02931 6.06618 6.12799 6.17432 6.27827 6.31966 6.34495 6.44011 6.48613 6.69132 6.82504 6.92055 6.96357 7.30772 7.36537 7.46473 7.71764 7.99852 8.08908 8.53859 8.64768 9.28563 9.37608 10.77070 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.031108 B = 0.002304 C = 0.002285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 899.867964 B =12150.300003 C =12249.851919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.126 3.874 3 O -0.545 6.545 4 C -0.122 4.122 5 C -0.078 4.078 6 C -0.077 4.077 7 C -0.117 4.117 8 C -0.119 4.119 9 C -0.129 4.129 10 C -0.119 4.119 11 C -0.118 4.118 12 C 0.494 3.506 13 O -0.553 6.553 14 N -0.597 5.597 15 C 0.105 3.895 16 C -0.138 4.138 17 C 0.247 3.753 18 O -0.586 6.586 19 C -0.535 4.535 20 H 0.063 0.937 21 C 0.072 3.928 22 N -0.895 5.895 23 Si 0.902 3.098 24 H -0.278 1.278 25 H -0.285 1.285 26 H -0.273 1.273 27 C 0.120 3.880 28 H 0.070 0.930 29 H 0.076 0.924 30 H 0.074 0.926 31 H 0.379 0.621 32 H 0.068 0.932 33 H 0.084 0.916 34 H 0.076 0.924 35 H 0.080 0.920 36 H 0.121 0.879 37 H 0.120 0.880 38 H 0.118 0.882 39 H 0.120 0.880 40 H 0.121 0.879 41 H 0.070 0.930 42 H 0.062 0.938 43 H 0.064 0.936 44 H 0.087 0.913 45 H 0.383 0.617 46 H 0.268 0.732 47 H 0.059 0.941 48 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.864 -0.929 -20.988 21.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.082 3.918 3 O -0.351 6.351 4 C -0.160 4.160 5 C -0.115 4.115 6 C -0.077 4.077 7 C -0.135 4.135 8 C -0.137 4.137 9 C -0.147 4.147 10 C -0.137 4.137 11 C -0.136 4.136 12 C 0.281 3.719 13 O -0.432 6.432 14 N -0.328 5.328 15 C -0.017 4.017 16 C -0.177 4.177 17 C 0.207 3.793 18 O -0.395 6.395 19 C -0.574 4.574 20 H 0.082 0.918 21 C -0.130 4.130 22 N -0.534 5.534 23 Si 0.730 3.270 24 H -0.204 1.204 25 H -0.210 1.210 26 H -0.197 1.197 27 C -0.002 4.002 28 H 0.089 0.911 29 H 0.094 0.906 30 H 0.093 0.907 31 H 0.227 0.773 32 H 0.087 0.913 33 H 0.102 0.898 34 H 0.095 0.905 35 H 0.099 0.901 36 H 0.139 0.861 37 H 0.138 0.862 38 H 0.137 0.863 39 H 0.138 0.862 40 H 0.139 0.861 41 H 0.088 0.912 42 H 0.080 0.920 43 H 0.083 0.917 44 H 0.106 0.894 45 H 0.233 0.767 46 H 0.078 0.922 47 H 0.078 0.922 48 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -2.203 -1.737 -21.407 21.590 hybrid contribution 0.159 0.001 1.404 1.413 sum -2.044 -1.736 -20.003 20.181 Atomic orbital electron populations 1.21799 0.90901 1.03138 1.03791 1.21321 0.96432 0.82397 0.91605 1.86584 1.27096 1.24612 1.96768 1.21997 1.01459 1.00508 0.92024 1.20635 1.01167 0.99194 0.90553 1.19971 0.94819 0.96378 0.96496 1.21094 0.95937 1.00270 0.96249 1.21146 0.99736 0.96477 0.96385 1.21127 0.95335 0.97970 1.00273 1.21145 0.96453 0.99784 0.96356 1.21094 1.00081 0.96159 0.96220 1.20980 0.79188 0.87279 0.84492 1.90673 1.51500 1.16028 1.85022 1.48684 1.62623 1.12236 1.09300 1.22529 0.99917 0.80478 0.98750 1.23339 1.00806 1.02716 0.90825 1.19446 0.81083 0.87412 0.91380 1.86108 1.33209 1.52278 1.67942 1.21515 1.45475 0.94540 0.95832 0.91848 1.24985 0.94134 0.94776 0.99150 1.69695 1.48989 1.02039 1.32723 0.86424 0.78850 0.78738 0.83019 1.20392 1.21037 1.19749 1.22104 0.98731 0.97325 0.82023 0.91127 0.90563 0.90667 0.77289 0.91288 0.89753 0.90529 0.90124 0.86070 0.86219 0.86350 0.86219 0.86063 0.91181 0.91986 0.91717 0.89436 0.76686 0.92206 0.92221 0.91058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.66 8.40 37.15 0.31 -1.35 16 2 C 0.13 1.68 0.67 -91.77 -0.06 1.62 16 3 O -0.54 -6.63 9.42 -35.23 -0.33 -6.96 16 4 C -0.12 -1.44 3.97 -26.73 -0.11 -1.55 16 5 C -0.08 -0.75 4.85 -27.88 -0.14 -0.89 16 6 C -0.08 -0.77 5.13 -104.62 -0.54 -1.31 16 7 C -0.12 -1.13 9.70 -39.58 -0.38 -1.52 16 8 C -0.12 -1.07 10.05 -39.58 -0.40 -1.47 16 9 C -0.13 -1.12 10.05 -39.59 -0.40 -1.52 16 10 C -0.12 -1.06 10.05 -39.58 -0.40 -1.46 16 11 C -0.12 -1.13 9.70 -39.58 -0.38 -1.52 16 12 C 0.49 8.91 6.75 -10.98 -0.07 8.83 16 13 O -0.55 -11.72 16.42 5.56 0.09 -11.62 16 14 N -0.60 -11.53 3.33 -170.52 -0.57 -12.10 16 15 C 0.11 1.90 5.36 -2.53 -0.01 1.88 16 16 C -0.14 -2.96 5.46 -24.58 -0.13 -3.10 16 17 C 0.25 5.90 0.85 -89.94 -0.08 5.82 16 18 O -0.59 -14.52 13.09 -35.23 -0.46 -14.99 16 19 C -0.54 -13.93 8.21 -34.44 -0.28 -14.21 16 20 H 0.06 1.66 7.57 -52.49 -0.40 1.27 16 21 C 0.07 1.84 5.26 -17.82 -0.09 1.75 16 22 N -0.90 -22.76 10.65 55.43 0.59 -22.17 16 23 Si 0.90 20.16 29.54 -169.99 -5.02 15.14 16 24 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 25 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 26 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 27 C 0.12 2.69 6.22 -3.07 -0.02 2.67 16 28 H 0.07 0.91 7.05 -51.93 -0.37 0.54 16 29 H 0.08 0.75 6.43 -51.93 -0.33 0.41 16 30 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 31 H 0.38 3.89 9.04 45.56 0.41 4.30 16 32 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 33 H 0.08 1.11 7.87 -51.93 -0.41 0.70 16 34 H 0.08 0.68 6.37 -51.93 -0.33 0.35 16 35 H 0.08 0.75 7.62 -51.93 -0.40 0.36 16 36 H 0.12 1.01 8.06 -52.49 -0.42 0.59 16 37 H 0.12 0.83 8.06 -52.49 -0.42 0.41 16 38 H 0.12 0.78 8.06 -52.49 -0.42 0.35 16 39 H 0.12 0.82 8.06 -52.49 -0.42 0.40 16 40 H 0.12 1.01 8.06 -52.49 -0.42 0.58 16 41 H 0.07 1.14 5.95 -51.93 -0.31 0.83 16 42 H 0.06 1.08 7.98 -51.93 -0.41 0.67 16 43 H 0.06 1.44 8.04 -51.93 -0.42 1.02 16 44 H 0.09 1.96 7.53 -51.93 -0.39 1.57 16 45 H 0.38 9.50 7.43 45.56 0.34 9.84 16 46 H 0.27 6.55 8.31 -40.82 -0.34 6.21 16 47 H 0.06 1.39 8.07 -51.92 -0.42 0.97 16 48 H 0.07 1.64 7.66 -51.93 -0.40 1.25 16 LS Contribution 383.95 15.07 5.79 5.79 Total: -1.00 -29.13 383.95 -9.02 -38.15 By element: Atomic # 1 Polarization: 21.99 SS G_CDS: -5.93 Total: 16.07 kcal Atomic # 6 Polarization: -4.12 SS G_CDS: -3.18 Total: -7.31 kcal Atomic # 7 Polarization: -34.29 SS G_CDS: 0.02 Total: -34.27 kcal Atomic # 8 Polarization: -32.87 SS G_CDS: -0.70 Total: -33.57 kcal Atomic # 14 Polarization: 20.16 SS G_CDS: -5.02 Total: 15.14 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -29.13 -9.02 -38.15 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592851580.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.857 kcal (2) G-P(sol) polarization free energy of solvation -29.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.151 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds