Wall clock time and date at job start Tue Mar 31 2020 18:43:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 O 1.42897 * 109.47296 * 2 1 4 4 C 1.53001 * 109.47264 * 239.99327 * 2 1 3 5 5 C 1.53003 * 109.46789 * 60.00477 * 4 2 1 6 6 C 1.50707 * 109.46826 * 179.97438 * 5 4 2 7 7 C 1.38236 * 120.00030 * 269.72411 * 6 5 4 8 8 C 1.38236 * 119.99708 * 179.81329 * 7 6 5 9 9 C 1.38232 * 119.99839 * 0.39938 * 8 7 6 10 10 C 1.38233 * 120.00340 * 359.85611 * 9 8 7 11 11 C 1.38234 * 119.99490 * 90.00393 * 6 5 4 12 12 C 1.50705 * 109.46945 * 119.99799 * 2 1 3 13 13 O 1.21281 * 119.99998 * 95.00205 * 12 2 1 14 14 N 1.34777 * 119.99880 * 275.00162 * 12 2 1 15 15 C 1.47419 * 125.64791 * 0.02562 * 14 12 2 16 16 C 1.54914 * 104.83401 * 155.83760 * 15 14 12 17 17 C 1.55157 * 101.57895 * 37.00788 * 16 15 14 18 18 O 1.42897 * 110.71976 * 83.04069 * 17 16 15 19 19 C 1.50701 * 110.72362 * 206.13513 * 17 16 15 20 20 H 1.08002 * 119.99761 * 118.54298 * 19 17 16 21 21 C 1.37871 * 119.99694 * 298.82861 * 19 17 16 22 22 N 1.31514 * 120.00482 * 359.71466 * 21 19 17 23 23 Si 1.86801 * 119.99746 * 179.72062 * 21 19 17 24 24 H 1.48504 * 109.47209 * 89.99886 * 23 21 19 25 25 H 1.48501 * 109.47358 * 209.99377 * 23 21 19 26 26 H 1.48496 * 109.47341 * 329.99989 * 23 21 19 27 27 C 1.47022 * 125.64899 * 179.97438 * 14 12 2 28 28 H 1.08992 * 109.47810 * 300.00544 * 1 2 3 29 29 H 1.09002 * 109.47117 * 60.00475 * 1 2 3 30 30 H 1.09003 * 109.47394 * 180.02562 * 1 2 3 31 31 H 0.96703 * 113.99876 * 180.02562 * 3 2 1 32 32 H 1.09000 * 109.46944 * 179.97438 * 4 2 1 33 33 H 1.08991 * 109.47511 * 300.00171 * 4 2 1 34 34 H 1.08998 * 109.47169 * 299.99847 * 5 4 2 35 35 H 1.09003 * 109.47069 * 59.99910 * 5 4 2 36 36 H 1.08001 * 119.99850 * 0.02562 * 7 6 5 37 37 H 1.07997 * 119.99659 * 180.23273 * 8 7 6 38 38 H 1.08000 * 119.99512 * 179.83787 * 9 8 7 39 39 H 1.08000 * 120.00337 * 179.97438 * 10 9 8 40 40 H 1.07995 * 120.00613 * 359.97127 * 11 6 5 41 41 H 1.09004 * 110.37070 * 37.00217 * 15 14 12 42 42 H 1.08999 * 110.46046 * 274.72158 * 15 14 12 43 43 H 1.09000 * 111.00326 * 278.93651 * 16 15 14 44 44 H 1.08991 * 111.00438 * 155.08249 * 16 15 14 45 45 H 0.96697 * 114.00521 * 63.84056 * 18 17 16 46 46 H 0.96995 * 120.00207 * 179.97438 * 22 21 19 47 47 H 1.09008 * 109.88024 * 61.67334 * 27 14 12 48 48 H 1.08998 * 109.87947 * 300.51423 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 2.0400 -0.7214 -1.2492 5 6 1.5300 -0.0002 -2.4985 6 6 2.0329 -0.7104 -3.7289 7 6 3.2381 -0.3408 -4.2962 8 6 3.7012 -0.9948 -5.4226 9 6 2.9552 -2.0129 -5.9863 10 6 1.7475 -2.3789 -5.4221 11 6 1.2862 -1.7275 -4.2935 12 6 2.0322 -0.7104 1.2305 13 8 2.3207 -1.8871 1.1761 14 7 2.1609 -0.0380 2.3915 15 6 1.8474 1.3876 2.5980 16 6 1.5563 1.5141 4.1142 17 6 2.5895 0.5237 4.7134 18 8 3.8681 1.1471 4.8484 19 6 2.1132 -0.0048 6.0419 20 1 1.9388 -1.0628 6.1710 21 6 1.8946 0.8630 7.0907 22 7 2.1070 2.1513 6.9334 23 14 1.2969 0.2089 8.7351 24 1 2.4649 -0.1323 9.5863 25 1 0.4773 1.2459 9.4121 26 1 0.4732 -1.0068 8.5145 27 6 2.6361 -0.6050 3.6620 28 1 -0.3634 0.5139 0.8898 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 2.9703 1.4235 -0.0004 32 1 3.1300 -0.7210 -1.2493 33 1 1.6767 -1.7490 -1.2491 34 1 0.4401 -0.0001 -2.4985 35 1 1.8934 1.0275 -2.4985 36 1 3.8195 0.4567 -3.8574 37 1 4.6445 -0.7086 -5.8636 38 1 3.3158 -2.5221 -6.8679 39 1 1.1644 -3.1740 -5.8628 40 1 0.3427 -2.0135 -3.8526 41 1 0.9688 1.6707 2.0182 42 1 2.6994 2.0089 2.3222 43 1 0.5374 1.2022 4.3438 44 1 1.7405 2.5298 4.4640 45 1 3.8807 1.8884 5.4692 46 1 1.9529 2.7619 7.6712 47 1 3.6593 -0.9636 3.5482 48 1 1.9859 -1.4244 3.9684 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592851580.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:43:44 Heat of formation + Delta-G solvation = -137.017580 kcal Electronic energy + Delta-G solvation = -29119.239831 eV Core-core repulsion = 25137.696391 eV Total energy + Delta-G solvation = -3981.543440 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.62071 -40.16868 -39.30686 -38.08705 -36.16007 -34.85538 -34.21586 -32.41303 -31.72288 -31.38563 -30.10375 -29.18529 -27.28199 -26.11155 -24.26885 -23.41614 -22.81910 -21.69029 -21.27602 -20.54105 -19.22732 -18.64099 -17.68602 -17.14677 -16.99865 -16.93471 -16.59113 -16.30746 -16.10336 -15.77215 -15.58263 -15.12531 -14.83291 -14.30383 -14.15519 -14.08973 -13.95546 -13.83615 -13.70021 -13.58878 -13.35682 -13.24215 -13.13647 -13.07819 -12.80264 -12.63437 -12.48035 -12.41537 -12.28351 -12.09679 -11.97647 -11.91985 -11.63955 -11.41044 -11.25308 -10.69534 -10.44076 -10.13668 -9.77938 -9.64572 -9.54078 -8.25539 -6.40275 0.48437 0.54194 1.40212 1.43349 1.46046 1.51795 1.95225 2.38505 2.90932 2.99440 3.14417 3.37731 3.61390 3.82474 3.84659 4.04128 4.05314 4.14221 4.21590 4.27295 4.35140 4.36355 4.46787 4.47134 4.56965 4.66563 4.69013 4.70722 4.72965 4.82815 4.88245 4.94424 5.02293 5.16069 5.17847 5.20283 5.23134 5.26533 5.35613 5.47067 5.53746 5.62000 5.66589 5.75853 5.78452 6.06093 6.17795 6.45922 6.60727 6.65315 7.06131 7.29791 7.39167 8.80112 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.031108 B = 0.002304 C = 0.002285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 899.867964 B =12150.300003 C =12249.851919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.141 3.859 3 O -0.540 6.540 4 C -0.112 4.112 5 C -0.067 4.067 6 C -0.092 4.092 7 C -0.131 4.131 8 C -0.130 4.130 9 C -0.136 4.136 10 C -0.129 4.129 11 C -0.132 4.132 12 C 0.489 3.511 13 O -0.588 6.588 14 N -0.600 5.600 15 C 0.121 3.879 16 C -0.129 4.129 17 C 0.236 3.764 18 O -0.592 6.592 19 C -0.564 4.564 20 H 0.049 0.951 21 C 0.038 3.962 22 N -0.904 5.904 23 Si 0.958 3.042 24 H -0.278 1.278 25 H -0.276 1.276 26 H -0.276 1.276 27 C 0.126 3.874 28 H 0.062 0.938 29 H 0.104 0.896 30 H 0.075 0.925 31 H 0.389 0.611 32 H 0.060 0.940 33 H 0.069 0.931 34 H 0.087 0.913 35 H 0.088 0.912 36 H 0.130 0.870 37 H 0.137 0.863 38 H 0.138 0.862 39 H 0.137 0.863 40 H 0.130 0.870 41 H 0.096 0.904 42 H 0.073 0.927 43 H 0.052 0.948 44 H 0.078 0.922 45 H 0.380 0.620 46 H 0.272 0.728 47 H 0.043 0.957 48 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.618 -0.089 -22.558 22.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.097 3.903 3 O -0.347 6.347 4 C -0.150 4.150 5 C -0.104 4.104 6 C -0.092 4.092 7 C -0.149 4.149 8 C -0.148 4.148 9 C -0.154 4.154 10 C -0.147 4.147 11 C -0.150 4.150 12 C 0.278 3.722 13 O -0.469 6.469 14 N -0.331 5.331 15 C -0.001 4.001 16 C -0.168 4.168 17 C 0.196 3.804 18 O -0.401 6.401 19 C -0.602 4.602 20 H 0.067 0.933 21 C -0.164 4.164 22 N -0.542 5.542 23 Si 0.784 3.216 24 H -0.203 1.203 25 H -0.201 1.201 26 H -0.200 1.200 27 C 0.003 3.997 28 H 0.081 0.919 29 H 0.123 0.877 30 H 0.094 0.906 31 H 0.239 0.761 32 H 0.079 0.921 33 H 0.088 0.912 34 H 0.106 0.894 35 H 0.106 0.894 36 H 0.148 0.852 37 H 0.155 0.845 38 H 0.156 0.844 39 H 0.155 0.845 40 H 0.148 0.852 41 H 0.114 0.886 42 H 0.092 0.908 43 H 0.071 0.929 44 H 0.097 0.903 45 H 0.230 0.770 46 H 0.082 0.918 47 H 0.061 0.939 48 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -2.953 -0.874 -22.997 23.202 hybrid contribution 0.451 -0.304 1.878 1.955 sum -2.503 -1.178 -21.119 21.299 Atomic orbital electron populations 1.21863 0.89462 1.03581 1.04790 1.21233 0.97270 0.82483 0.89299 1.86572 1.28215 1.23469 1.96484 1.21900 1.00904 0.99831 0.92413 1.20544 1.01708 0.99037 0.89077 1.20086 0.95304 0.96950 0.96897 1.21327 0.96091 1.00799 0.96714 1.21445 1.00526 0.96481 0.96301 1.21457 0.95232 0.97881 1.00849 1.21446 0.96848 1.00167 0.96257 1.21335 1.00645 0.96292 0.96684 1.22060 0.77883 0.87059 0.85174 1.90652 1.52767 1.17877 1.85626 1.48746 1.62904 1.12722 1.08759 1.22470 1.01407 0.79734 0.96485 1.23135 0.99246 1.01238 0.93196 1.19557 0.81232 0.88364 0.91201 1.86094 1.33988 1.52232 1.67802 1.21715 1.46808 0.94178 0.97544 0.93251 1.25575 0.94084 0.95090 1.01641 1.69746 1.48576 1.02423 1.33481 0.85565 0.78308 0.78196 0.79579 1.20335 1.20098 1.20048 1.21812 0.97577 0.96735 0.83616 0.91902 0.87736 0.90630 0.76102 0.92123 0.91222 0.89431 0.89394 0.85214 0.84542 0.84406 0.84497 0.85161 0.88595 0.90840 0.92877 0.90343 0.76984 0.91847 0.93877 0.92543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.00 8.40 71.98 0.60 -2.40 16 2 C 0.14 3.50 0.67 -11.54 -0.01 3.49 16 3 O -0.54 -11.65 9.42 -148.98 -1.40 -13.05 16 4 C -0.11 -2.51 3.97 30.60 0.12 -2.39 16 5 C -0.07 -1.14 4.85 29.85 0.14 -0.99 16 6 C -0.09 -1.72 5.13 -19.86 -0.10 -1.82 16 7 C -0.13 -2.35 9.70 22.27 0.22 -2.13 16 8 C -0.13 -2.11 10.05 22.27 0.22 -1.89 16 9 C -0.14 -2.12 10.05 22.27 0.22 -1.90 16 10 C -0.13 -2.10 10.05 22.27 0.22 -1.88 16 11 C -0.13 -2.35 9.70 22.27 0.22 -2.13 16 12 C 0.49 17.42 6.75 87.66 0.59 18.02 16 13 O -0.59 -25.22 16.42 -3.03 -0.05 -25.27 16 14 N -0.60 -23.03 3.33 -811.78 -2.70 -25.73 16 15 C 0.12 4.17 5.36 86.86 0.47 4.64 16 16 C -0.13 -5.53 5.46 31.99 0.17 -5.36 16 17 C 0.24 11.49 0.85 -10.35 -0.01 11.48 16 18 O -0.59 -29.75 13.09 -148.98 -1.95 -31.70 16 19 C -0.56 -29.97 8.21 25.60 0.21 -29.76 16 20 H 0.05 2.68 7.57 -2.91 -0.02 2.66 16 21 C 0.04 1.93 5.26 84.65 0.45 2.38 16 22 N -0.90 -45.76 10.65 21.45 0.23 -45.53 16 23 Si 0.96 41.33 29.54 68.60 2.03 43.36 16 24 H -0.28 -11.91 7.11 99.48 0.71 -11.20 16 25 H -0.28 -11.45 7.11 99.48 0.71 -10.75 16 26 H -0.28 -11.93 7.11 99.48 0.71 -11.23 16 27 C 0.13 5.80 6.22 86.73 0.54 6.34 16 28 H 0.06 1.46 7.05 -2.39 -0.02 1.45 16 29 H 0.10 1.67 6.43 -2.39 -0.02 1.66 16 30 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 31 H 0.39 6.96 9.04 -74.06 -0.67 6.29 16 32 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 33 H 0.07 1.78 7.87 -2.39 -0.02 1.76 16 34 H 0.09 1.30 6.37 -2.39 -0.02 1.28 16 35 H 0.09 1.39 7.62 -2.39 -0.02 1.37 16 36 H 0.13 1.97 8.06 -2.91 -0.02 1.95 16 37 H 0.14 1.64 8.06 -2.91 -0.02 1.62 16 38 H 0.14 1.51 8.06 -2.91 -0.02 1.48 16 39 H 0.14 1.63 8.06 -2.91 -0.02 1.61 16 40 H 0.13 1.97 8.06 -2.91 -0.02 1.94 16 41 H 0.10 2.87 5.95 -2.39 -0.01 2.86 16 42 H 0.07 2.41 7.98 -2.39 -0.02 2.39 16 43 H 0.05 2.36 8.04 -2.39 -0.02 2.34 16 44 H 0.08 3.49 7.53 -2.39 -0.02 3.47 16 45 H 0.38 19.12 7.43 -74.06 -0.55 18.57 16 46 H 0.27 13.09 8.31 -92.71 -0.77 12.32 16 47 H 0.04 2.09 8.07 -2.38 -0.02 2.07 16 48 H 0.06 2.72 7.66 -2.39 -0.02 2.71 16 Total: -1.00 -62.77 383.95 0.19 -62.58 By element: Atomic # 1 Polarization: 41.89 SS G_CDS: -0.24 Total: 41.65 kcal Atomic # 6 Polarization: -10.59 SS G_CDS: 4.28 Total: -6.31 kcal Atomic # 7 Polarization: -68.79 SS G_CDS: -2.47 Total: -71.26 kcal Atomic # 8 Polarization: -66.62 SS G_CDS: -3.40 Total: -70.02 kcal Atomic # 14 Polarization: 41.33 SS G_CDS: 2.03 Total: 43.36 kcal Total: -62.77 0.19 -62.58 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592851580.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.438 kcal (2) G-P(sol) polarization free energy of solvation -62.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.579 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds