Wall clock time and date at job start Tue Mar 31 2020 18:43:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.42902 * 109.47042 * 2 1 4 4 C 1.52998 * 109.47269 * 120.00720 * 2 1 3 5 5 C 1.52999 * 109.47018 * 304.99902 * 4 2 1 6 6 C 1.50693 * 109.47371 * 180.02562 * 5 4 2 7 7 C 1.38238 * 119.99692 * 269.72932 * 6 5 4 8 8 C 1.38243 * 119.99751 * 179.78560 * 7 6 5 9 9 C 1.38227 * 119.99886 * 0.44025 * 8 7 6 10 10 C 1.38241 * 120.00346 * 359.81089 * 9 8 7 11 11 C 1.38227 * 119.99828 * 359.97438 * 10 9 8 12 12 C 1.50700 * 109.47034 * 240.00672 * 2 1 3 13 13 O 1.21287 * 120.00057 * 262.47670 * 12 2 1 14 14 N 1.34778 * 120.00191 * 82.47838 * 12 2 1 15 15 C 1.47421 * 125.64977 * 174.89326 * 14 12 2 16 16 C 1.54908 * 104.83519 * 155.90772 * 15 14 12 17 17 C 1.55155 * 101.57880 * 37.01039 * 16 15 14 18 18 O 1.42899 * 110.72264 * 82.86250 * 17 16 15 19 19 C 1.50704 * 110.71863 * 205.95894 * 17 16 15 20 20 H 1.08004 * 120.00257 * 116.15670 * 19 17 16 21 21 C 1.37872 * 119.99970 * 296.15540 * 19 17 16 22 22 N 1.31516 * 120.00454 * 0.02562 * 21 19 17 23 23 Si 1.86804 * 120.00060 * 180.02562 * 21 19 17 24 24 H 1.48500 * 109.46960 * 359.97438 * 23 21 19 25 25 H 1.48500 * 109.47459 * 119.99957 * 23 21 19 26 26 H 1.48503 * 109.47331 * 240.00366 * 23 21 19 27 27 C 1.47027 * 125.64732 * 354.93379 * 14 12 2 28 28 H 1.08998 * 109.47197 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47219 * 299.99783 * 1 2 3 30 30 H 1.08998 * 109.47432 * 59.99304 * 1 2 3 31 31 H 0.96701 * 113.99989 * 179.97438 * 3 2 1 32 32 H 1.09000 * 109.47300 * 64.99649 * 4 2 1 33 33 H 1.09002 * 109.47150 * 185.00394 * 4 2 1 34 34 H 1.09004 * 109.47349 * 300.00114 * 5 4 2 35 35 H 1.08997 * 109.47350 * 59.99558 * 5 4 2 36 36 H 1.07996 * 119.99918 * 359.97438 * 7 6 5 37 37 H 1.07996 * 119.99596 * 180.27099 * 8 7 6 38 38 H 1.08005 * 119.99838 * 179.83458 * 9 8 7 39 39 H 1.07995 * 120.00051 * 180.02562 * 10 9 8 40 40 H 1.07994 * 120.00316 * 180.02562 * 11 10 9 41 41 H 1.09007 * 110.36838 * 37.06922 * 15 14 12 42 42 H 1.09005 * 110.36905 * 274.74541 * 15 14 12 43 43 H 1.09004 * 111.00214 * 278.93940 * 16 15 14 44 44 H 1.09000 * 111.04021 * 155.10026 * 16 15 14 45 45 H 0.96707 * 113.99539 * 61.45351 * 18 17 16 46 46 H 0.96993 * 120.00151 * 180.02562 * 22 21 19 47 47 H 1.08998 * 109.87701 * 61.60953 * 27 14 12 48 48 H 1.08993 * 109.88296 * 300.44240 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 2.0400 -0.7214 1.2491 5 6 1.4299 -0.0765 2.4953 6 6 1.9327 -0.7866 3.7257 7 6 1.2359 -1.8672 4.2332 8 6 1.6996 -2.5214 5.3594 9 6 2.8549 -2.0893 5.9831 10 6 3.5489 -1.0053 5.4786 11 6 3.0878 -0.3540 4.3500 12 6 2.0323 -0.7103 -1.2306 13 8 2.3641 -1.8751 -1.1655 14 7 2.1128 -0.0512 -2.4034 15 6 2.6819 -0.5876 -3.6531 16 6 2.0071 0.2330 -4.7805 17 6 1.9223 1.6405 -4.1332 18 8 3.1596 2.3401 -4.2805 19 6 0.7888 2.4344 -4.7300 20 1 -0.0438 2.7356 -4.1115 21 6 0.8148 2.7762 -6.0654 22 7 1.8284 2.4091 -6.8187 23 14 -0.5899 3.7608 -6.8049 24 1 -1.6007 4.0464 -5.7552 25 1 -0.0657 5.0393 -7.3490 26 1 -1.2205 2.9790 -7.8987 27 6 1.6485 1.3222 -2.6482 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 2.9702 1.4237 0.0004 32 1 1.7516 -1.7716 1.2054 33 1 3.1263 -0.6444 1.2951 34 1 1.7183 0.9738 2.5390 35 1 0.3436 -0.1533 2.4494 36 1 0.3310 -2.2023 3.7482 37 1 1.1575 -3.3684 5.7533 38 1 3.2157 -2.5987 6.8645 39 1 4.4518 -0.6680 5.9657 40 1 3.6301 0.4925 3.9555 41 1 2.4399 -1.6453 -3.7569 42 1 3.7619 -0.4411 -3.6717 43 1 1.0132 -0.1546 -5.0044 44 1 2.6279 0.2516 -5.6762 45 1 3.4160 2.4964 -5.1998 46 1 1.8468 2.6499 -7.7580 47 1 2.1969 2.0176 -2.0128 48 1 0.5802 1.3941 -2.4445 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592851581.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:43:49 Heat of formation + Delta-G solvation = -116.980313 kcal Electronic energy + Delta-G solvation = -29242.611652 eV Core-core repulsion = 25261.937093 eV Total energy + Delta-G solvation = -3980.674559 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.26325 -39.36524 -37.74197 -36.75746 -34.44265 -33.90285 -32.20367 -31.44199 -31.05236 -29.85862 -28.45585 -28.03466 -25.51750 -24.94641 -23.14803 -22.73608 -21.44549 -20.39753 -19.86662 -19.22139 -17.52238 -16.97644 -16.88471 -15.89069 -15.75417 -15.60687 -15.18876 -14.99502 -14.87295 -14.54150 -14.14469 -13.72912 -13.53315 -13.35639 -13.14318 -12.97718 -12.90130 -12.64263 -12.35276 -12.17229 -12.08592 -12.04489 -11.46426 -11.40885 -11.33632 -11.32984 -11.26303 -11.11109 -10.88308 -10.81088 -10.54855 -10.51058 -10.34106 -10.10369 -9.49308 -9.09851 -9.08860 -8.79592 -8.66247 -8.21736 -8.00410 -6.30664 -4.37925 1.18791 1.23042 2.87961 3.17187 3.26398 3.29859 3.40291 3.64283 4.20559 4.25115 4.53789 4.65139 4.71708 4.81786 4.92817 4.93190 4.97778 5.09146 5.20506 5.33597 5.38640 5.46682 5.59572 5.64594 5.72405 5.79695 5.81345 5.85120 5.90427 5.93034 6.00895 6.01656 6.17218 6.22737 6.27108 6.30261 6.33666 6.50312 6.51399 6.70126 6.84498 6.91841 6.95473 7.28332 7.34301 7.55081 7.71690 7.97205 8.10163 8.52294 8.64251 9.29305 9.39208 10.77239 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.025542 B = 0.002454 C = 0.002398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1095.980144 B =11405.078012 C =11674.921879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.126 3.874 3 O -0.541 6.541 4 C -0.121 4.121 5 C -0.080 4.080 6 C -0.076 4.076 7 C -0.118 4.118 8 C -0.120 4.120 9 C -0.129 4.129 10 C -0.120 4.120 11 C -0.118 4.118 12 C 0.497 3.503 13 O -0.557 6.557 14 N -0.597 5.597 15 C 0.100 3.900 16 C -0.137 4.137 17 C 0.244 3.756 18 O -0.586 6.586 19 C -0.533 4.533 20 H 0.064 0.936 21 C 0.072 3.928 22 N -0.896 5.896 23 Si 0.902 3.098 24 H -0.271 1.271 25 H -0.282 1.282 26 H -0.283 1.283 27 C 0.118 3.882 28 H 0.073 0.927 29 H 0.077 0.923 30 H 0.073 0.927 31 H 0.379 0.621 32 H 0.084 0.916 33 H 0.068 0.932 34 H 0.081 0.919 35 H 0.077 0.923 36 H 0.121 0.879 37 H 0.120 0.880 38 H 0.118 0.882 39 H 0.120 0.880 40 H 0.122 0.878 41 H 0.061 0.939 42 H 0.060 0.940 43 H 0.065 0.935 44 H 0.086 0.914 45 H 0.383 0.617 46 H 0.268 0.732 47 H 0.078 0.922 48 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.441 -5.630 18.601 19.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.082 3.918 3 O -0.347 6.347 4 C -0.159 4.159 5 C -0.117 4.117 6 C -0.076 4.076 7 C -0.136 4.136 8 C -0.138 4.138 9 C -0.147 4.147 10 C -0.138 4.138 11 C -0.136 4.136 12 C 0.283 3.717 13 O -0.437 6.437 14 N -0.329 5.329 15 C -0.022 4.022 16 C -0.176 4.176 17 C 0.204 3.796 18 O -0.395 6.395 19 C -0.571 4.571 20 H 0.083 0.917 21 C -0.131 4.131 22 N -0.536 5.536 23 Si 0.730 3.270 24 H -0.196 1.196 25 H -0.208 1.208 26 H -0.209 1.209 27 C -0.003 4.003 28 H 0.092 0.908 29 H 0.095 0.905 30 H 0.092 0.908 31 H 0.227 0.773 32 H 0.103 0.897 33 H 0.086 0.914 34 H 0.099 0.901 35 H 0.096 0.904 36 H 0.139 0.861 37 H 0.138 0.862 38 H 0.136 0.864 39 H 0.138 0.862 40 H 0.140 0.860 41 H 0.080 0.920 42 H 0.078 0.922 43 H 0.084 0.916 44 H 0.104 0.896 45 H 0.234 0.766 46 H 0.078 0.922 47 H 0.096 0.904 48 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 0.017 -6.141 19.159 20.119 hybrid contribution -0.046 0.320 -1.237 1.279 sum -0.029 -5.821 17.922 18.844 Atomic orbital electron populations 1.21829 0.90967 1.02994 1.04137 1.21308 0.96535 0.82556 0.91419 1.86625 1.27063 1.24345 1.96622 1.21995 1.00887 1.00952 0.92071 1.20670 1.00851 0.99620 0.90582 1.19979 0.95147 0.95977 0.96485 1.21101 1.00165 0.95788 0.96507 1.21141 0.96688 0.99798 0.96127 1.21124 0.95956 0.97422 1.00247 1.21144 0.99806 0.96204 0.96613 1.21098 0.96238 1.00276 0.95940 1.21012 0.79117 0.86948 0.84578 1.90655 1.51084 1.16535 1.85433 1.48685 1.58259 1.16579 1.09365 1.22411 0.97616 0.98042 0.84137 1.23327 1.00187 0.97511 0.96550 1.19511 0.83802 0.88118 0.88169 1.86101 1.40968 1.79165 1.33295 1.21540 1.05556 1.35240 0.94757 0.91746 1.24992 0.96230 0.95025 0.96844 1.69653 1.30582 1.46035 1.07302 0.86375 0.81897 0.79719 0.79052 1.19585 1.20765 1.20889 1.22302 0.98927 0.80666 0.98448 0.90809 0.90460 0.90847 0.77293 0.89727 0.91350 0.90085 0.90410 0.86056 0.86236 0.86371 0.86234 0.86045 0.92023 0.92191 0.91632 0.89590 0.76571 0.92236 0.90394 0.91151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.82 8.32 37.15 0.31 -1.51 16 2 C 0.13 1.76 0.71 -91.78 -0.06 1.69 16 3 O -0.54 -7.35 9.64 -35.23 -0.34 -7.69 16 4 C -0.12 -1.48 4.07 -26.73 -0.11 -1.58 16 5 C -0.08 -0.81 4.75 -27.89 -0.13 -0.94 16 6 C -0.08 -0.79 5.13 -104.62 -0.54 -1.33 16 7 C -0.12 -1.17 9.70 -39.58 -0.38 -1.55 16 8 C -0.12 -1.09 10.05 -39.58 -0.40 -1.48 16 9 C -0.13 -1.14 10.05 -39.58 -0.40 -1.54 16 10 C -0.12 -1.09 10.05 -39.58 -0.40 -1.49 16 11 C -0.12 -1.16 9.70 -39.58 -0.38 -1.55 16 12 C 0.50 8.95 6.73 -10.98 -0.07 8.87 16 13 O -0.56 -11.46 16.18 5.55 0.09 -11.37 16 14 N -0.60 -11.53 3.32 -170.52 -0.57 -12.10 16 15 C 0.10 2.00 6.92 -2.53 -0.02 1.99 16 16 C -0.14 -3.01 5.56 -24.58 -0.14 -3.15 16 17 C 0.24 5.69 0.85 -89.94 -0.08 5.62 16 18 O -0.59 -14.28 13.06 -35.23 -0.46 -14.74 16 19 C -0.53 -13.49 8.22 -34.44 -0.28 -13.77 16 20 H 0.06 1.63 7.56 -52.48 -0.40 1.23 16 21 C 0.07 1.81 5.29 -17.82 -0.09 1.71 16 22 N -0.90 -22.79 10.69 55.43 0.59 -22.20 16 23 Si 0.90 19.90 29.54 -169.99 -5.02 14.88 16 24 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 25 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 26 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 27 C 0.12 2.40 5.14 -3.06 -0.02 2.39 16 28 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 29 H 0.08 0.83 6.35 -51.93 -0.33 0.50 16 30 H 0.07 1.04 6.66 -51.93 -0.35 0.70 16 31 H 0.38 4.36 9.01 45.56 0.41 4.77 16 32 H 0.08 1.14 7.70 -51.93 -0.40 0.74 16 33 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.08 0.81 7.77 -51.93 -0.40 0.41 16 35 H 0.08 0.73 6.29 -51.93 -0.33 0.41 16 36 H 0.12 1.04 8.06 -52.49 -0.42 0.62 16 37 H 0.12 0.84 8.06 -52.49 -0.42 0.42 16 38 H 0.12 0.79 8.06 -52.48 -0.42 0.37 16 39 H 0.12 0.85 8.06 -52.49 -0.42 0.42 16 40 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 41 H 0.06 1.21 7.99 -51.93 -0.41 0.79 16 42 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 43 H 0.06 1.48 8.04 -51.93 -0.42 1.07 16 44 H 0.09 1.97 7.64 -51.93 -0.40 1.58 16 45 H 0.38 9.50 7.28 45.56 0.33 9.83 16 46 H 0.27 6.53 8.31 -40.82 -0.34 6.19 16 47 H 0.08 1.56 6.37 -51.93 -0.33 1.23 16 48 H 0.07 1.42 6.26 -51.93 -0.32 1.10 16 LS Contribution 382.92 15.07 5.77 5.77 Total: -1.00 -28.65 382.92 -8.99 -37.64 By element: Atomic # 1 Polarization: 23.30 SS G_CDS: -5.86 Total: 17.44 kcal Atomic # 6 Polarization: -4.44 SS G_CDS: -3.19 Total: -7.63 kcal Atomic # 7 Polarization: -34.32 SS G_CDS: 0.03 Total: -34.30 kcal Atomic # 8 Polarization: -33.09 SS G_CDS: -0.71 Total: -33.80 kcal Atomic # 14 Polarization: 19.90 SS G_CDS: -5.02 Total: 14.88 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -28.65 -8.99 -37.64 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592851581.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.339 kcal (2) G-P(sol) polarization free energy of solvation -28.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.641 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds