Wall clock time and date at job start Tue Mar 31 2020 18:43:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.42902 * 109.47042 * 2 1 4 4 C 1.52998 * 109.47269 * 120.00720 * 2 1 3 5 5 C 1.52999 * 109.47018 * 304.99902 * 4 2 1 6 6 C 1.50693 * 109.47371 * 180.02562 * 5 4 2 7 7 C 1.38238 * 119.99692 * 269.72932 * 6 5 4 8 8 C 1.38243 * 119.99751 * 179.78560 * 7 6 5 9 9 C 1.38227 * 119.99886 * 0.44025 * 8 7 6 10 10 C 1.38241 * 120.00346 * 359.81089 * 9 8 7 11 11 C 1.38227 * 119.99828 * 359.97438 * 10 9 8 12 12 C 1.50700 * 109.47034 * 240.00672 * 2 1 3 13 13 O 1.21287 * 120.00057 * 262.47670 * 12 2 1 14 14 N 1.34778 * 120.00191 * 82.47838 * 12 2 1 15 15 C 1.47421 * 125.64977 * 174.89326 * 14 12 2 16 16 C 1.54908 * 104.83519 * 155.90772 * 15 14 12 17 17 C 1.55155 * 101.57880 * 37.01039 * 16 15 14 18 18 O 1.42899 * 110.72264 * 82.86250 * 17 16 15 19 19 C 1.50704 * 110.71863 * 205.95894 * 17 16 15 20 20 H 1.08004 * 120.00257 * 116.15670 * 19 17 16 21 21 C 1.37872 * 119.99970 * 296.15540 * 19 17 16 22 22 N 1.31516 * 120.00454 * 0.02562 * 21 19 17 23 23 Si 1.86804 * 120.00060 * 180.02562 * 21 19 17 24 24 H 1.48500 * 109.46960 * 359.97438 * 23 21 19 25 25 H 1.48500 * 109.47459 * 119.99957 * 23 21 19 26 26 H 1.48503 * 109.47331 * 240.00366 * 23 21 19 27 27 C 1.47027 * 125.64732 * 354.93379 * 14 12 2 28 28 H 1.08998 * 109.47197 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47219 * 299.99783 * 1 2 3 30 30 H 1.08998 * 109.47432 * 59.99304 * 1 2 3 31 31 H 0.96701 * 113.99989 * 179.97438 * 3 2 1 32 32 H 1.09000 * 109.47300 * 64.99649 * 4 2 1 33 33 H 1.09002 * 109.47150 * 185.00394 * 4 2 1 34 34 H 1.09004 * 109.47349 * 300.00114 * 5 4 2 35 35 H 1.08997 * 109.47350 * 59.99558 * 5 4 2 36 36 H 1.07996 * 119.99918 * 359.97438 * 7 6 5 37 37 H 1.07996 * 119.99596 * 180.27099 * 8 7 6 38 38 H 1.08005 * 119.99838 * 179.83458 * 9 8 7 39 39 H 1.07995 * 120.00051 * 180.02562 * 10 9 8 40 40 H 1.07994 * 120.00316 * 180.02562 * 11 10 9 41 41 H 1.09007 * 110.36838 * 37.06922 * 15 14 12 42 42 H 1.09005 * 110.36905 * 274.74541 * 15 14 12 43 43 H 1.09004 * 111.00214 * 278.93940 * 16 15 14 44 44 H 1.09000 * 111.04021 * 155.10026 * 16 15 14 45 45 H 0.96707 * 113.99539 * 61.45351 * 18 17 16 46 46 H 0.96993 * 120.00151 * 180.02562 * 22 21 19 47 47 H 1.08998 * 109.87701 * 61.60953 * 27 14 12 48 48 H 1.08993 * 109.88296 * 300.44240 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 2.0400 -0.7214 1.2491 5 6 1.4299 -0.0765 2.4953 6 6 1.9327 -0.7866 3.7257 7 6 1.2359 -1.8672 4.2332 8 6 1.6996 -2.5214 5.3594 9 6 2.8549 -2.0893 5.9831 10 6 3.5489 -1.0053 5.4786 11 6 3.0878 -0.3540 4.3500 12 6 2.0323 -0.7103 -1.2306 13 8 2.3641 -1.8751 -1.1655 14 7 2.1128 -0.0512 -2.4034 15 6 2.6819 -0.5876 -3.6531 16 6 2.0071 0.2330 -4.7805 17 6 1.9223 1.6405 -4.1332 18 8 3.1596 2.3401 -4.2805 19 6 0.7888 2.4344 -4.7300 20 1 -0.0438 2.7356 -4.1115 21 6 0.8148 2.7762 -6.0654 22 7 1.8284 2.4091 -6.8187 23 14 -0.5899 3.7608 -6.8049 24 1 -1.6007 4.0464 -5.7552 25 1 -0.0657 5.0393 -7.3490 26 1 -1.2205 2.9790 -7.8987 27 6 1.6485 1.3222 -2.6482 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 2.9702 1.4237 0.0004 32 1 1.7516 -1.7716 1.2054 33 1 3.1263 -0.6444 1.2951 34 1 1.7183 0.9738 2.5390 35 1 0.3436 -0.1533 2.4494 36 1 0.3310 -2.2023 3.7482 37 1 1.1575 -3.3684 5.7533 38 1 3.2157 -2.5987 6.8645 39 1 4.4518 -0.6680 5.9657 40 1 3.6301 0.4925 3.9555 41 1 2.4399 -1.6453 -3.7569 42 1 3.7619 -0.4411 -3.6717 43 1 1.0132 -0.1546 -5.0044 44 1 2.6279 0.2516 -5.6762 45 1 3.4160 2.4964 -5.1998 46 1 1.8468 2.6499 -7.7580 47 1 2.1969 2.0176 -2.0128 48 1 0.5802 1.3941 -2.4445 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592851581.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:43:48 Heat of formation + Delta-G solvation = -135.154728 kcal Electronic energy + Delta-G solvation = -29243.399754 eV Core-core repulsion = 25261.937093 eV Total energy + Delta-G solvation = -3981.462661 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.62087 -40.16843 -39.28254 -38.10367 -36.08615 -34.91357 -34.14649 -32.45191 -31.72300 -31.45792 -30.07322 -29.09313 -27.03536 -26.30118 -24.49000 -23.41383 -22.55081 -21.67298 -21.38782 -20.55989 -19.22455 -18.48193 -17.68803 -17.38952 -16.90957 -16.79999 -16.63388 -16.36565 -15.98893 -15.81751 -15.59005 -15.07807 -14.76840 -14.39705 -14.22768 -14.05003 -13.99270 -13.76743 -13.70607 -13.61520 -13.35274 -13.25614 -13.16139 -13.06814 -12.70085 -12.57304 -12.47962 -12.37259 -12.21634 -12.08935 -12.03802 -11.90811 -11.63063 -11.45000 -11.21420 -10.67706 -10.42810 -10.11016 -9.77902 -9.60959 -9.53508 -8.22295 -6.35917 0.48492 0.54255 1.42018 1.43573 1.46744 1.56132 1.97017 2.40726 2.91016 3.03605 3.15382 3.37556 3.61766 3.83966 3.87151 4.03679 4.08597 4.16074 4.20822 4.24702 4.31608 4.35111 4.36689 4.47829 4.57605 4.68246 4.69491 4.70458 4.75500 4.82493 4.88480 4.94182 5.05306 5.15765 5.17712 5.19564 5.24466 5.27815 5.34441 5.44013 5.50083 5.62126 5.66589 5.78656 5.78982 6.08810 6.17785 6.46239 6.59459 6.70307 7.04968 7.34182 7.43258 8.84184 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.025542 B = 0.002454 C = 0.002398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1095.980144 B =11405.078012 C =11674.921879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.135 3.865 3 O -0.543 6.543 4 C -0.110 4.110 5 C -0.070 4.070 6 C -0.092 4.092 7 C -0.132 4.132 8 C -0.129 4.129 9 C -0.136 4.136 10 C -0.129 4.129 11 C -0.132 4.132 12 C 0.494 3.506 13 O -0.582 6.582 14 N -0.601 5.601 15 C 0.106 3.894 16 C -0.127 4.127 17 C 0.230 3.770 18 O -0.591 6.591 19 C -0.553 4.553 20 H 0.060 0.940 21 C 0.032 3.968 22 N -0.911 5.911 23 Si 0.959 3.041 24 H -0.269 1.269 25 H -0.280 1.280 26 H -0.281 1.281 27 C 0.134 3.866 28 H 0.079 0.921 29 H 0.101 0.899 30 H 0.057 0.943 31 H 0.388 0.612 32 H 0.072 0.928 33 H 0.063 0.937 34 H 0.084 0.916 35 H 0.087 0.913 36 H 0.130 0.870 37 H 0.138 0.862 38 H 0.139 0.861 39 H 0.137 0.863 40 H 0.129 0.871 41 H 0.065 0.935 42 H 0.061 0.939 43 H 0.054 0.946 44 H 0.072 0.928 45 H 0.379 0.621 46 H 0.270 0.730 47 H 0.083 0.917 48 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.150 -5.486 20.257 20.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.092 3.908 3 O -0.350 6.350 4 C -0.148 4.148 5 C -0.107 4.107 6 C -0.092 4.092 7 C -0.150 4.150 8 C -0.146 4.146 9 C -0.154 4.154 10 C -0.147 4.147 11 C -0.150 4.150 12 C 0.283 3.717 13 O -0.464 6.464 14 N -0.332 5.332 15 C -0.017 4.017 16 C -0.166 4.166 17 C 0.190 3.810 18 O -0.400 6.400 19 C -0.591 4.591 20 H 0.078 0.922 21 C -0.169 4.169 22 N -0.551 5.551 23 Si 0.785 3.215 24 H -0.193 1.193 25 H -0.206 1.206 26 H -0.207 1.207 27 C 0.012 3.988 28 H 0.098 0.902 29 H 0.120 0.880 30 H 0.076 0.924 31 H 0.238 0.762 32 H 0.090 0.910 33 H 0.082 0.918 34 H 0.103 0.897 35 H 0.105 0.895 36 H 0.148 0.852 37 H 0.156 0.844 38 H 0.157 0.843 39 H 0.155 0.845 40 H 0.147 0.853 41 H 0.084 0.916 42 H 0.079 0.921 43 H 0.073 0.927 44 H 0.090 0.910 45 H 0.229 0.771 46 H 0.079 0.921 47 H 0.101 0.899 48 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -0.567 -5.997 20.833 21.686 hybrid contribution 0.185 0.236 -1.735 1.761 sum -0.382 -5.760 19.097 19.951 Atomic orbital electron populations 1.21883 0.89868 1.03607 1.04589 1.21295 0.97224 0.82452 0.89877 1.86613 1.28096 1.23902 1.96419 1.21884 1.00695 1.00094 0.92118 1.20574 1.01175 0.99473 0.89436 1.20065 0.95723 0.96561 0.96822 1.21332 1.00678 0.95905 0.97039 1.21445 0.96995 1.00279 0.95928 1.21461 0.95761 0.97319 1.00814 1.21442 1.00501 0.96252 0.96483 1.21317 0.96373 1.00816 0.96445 1.21869 0.78047 0.86736 0.85064 1.90640 1.52059 1.17839 1.85838 1.48722 1.58612 1.16238 1.09670 1.22270 0.97492 0.97879 0.84049 1.23112 0.99394 0.97372 0.96672 1.19708 0.82954 0.88235 0.90115 1.86093 1.41476 1.79481 1.32907 1.21785 1.06140 1.35964 0.95231 0.92160 1.25641 0.98204 0.95838 0.97211 1.69727 1.31542 1.46370 1.07457 0.85496 0.79472 0.78368 0.78193 1.19345 1.20627 1.20736 1.22070 0.99053 0.81176 0.96540 0.90193 0.87999 0.92354 0.76211 0.90972 0.91775 0.89740 0.89504 0.85211 0.84438 0.84320 0.84490 0.85317 0.91642 0.92092 0.92749 0.90966 0.77129 0.92100 0.89882 0.90994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.40 8.32 71.98 0.60 -2.80 16 2 C 0.14 3.60 0.71 -11.54 -0.01 3.59 16 3 O -0.54 -13.87 9.64 -148.98 -1.44 -15.31 16 4 C -0.11 -2.54 4.07 30.59 0.12 -2.41 16 5 C -0.07 -1.29 4.75 29.85 0.14 -1.14 16 6 C -0.09 -1.78 5.13 -19.87 -0.10 -1.88 16 7 C -0.13 -2.42 9.70 22.27 0.22 -2.20 16 8 C -0.13 -2.11 10.05 22.27 0.22 -1.89 16 9 C -0.14 -2.13 10.05 22.27 0.22 -1.90 16 10 C -0.13 -2.13 10.05 22.27 0.22 -1.91 16 11 C -0.13 -2.43 9.70 22.27 0.22 -2.21 16 12 C 0.49 17.43 6.73 87.66 0.59 18.03 16 13 O -0.58 -23.68 16.18 -3.05 -0.05 -23.73 16 14 N -0.60 -22.91 3.32 -811.78 -2.70 -25.61 16 15 C 0.11 4.23 6.92 86.86 0.60 4.83 16 16 C -0.13 -5.64 5.56 31.99 0.18 -5.46 16 17 C 0.23 10.74 0.85 -10.35 -0.01 10.73 16 18 O -0.59 -28.93 13.06 -148.98 -1.95 -30.88 16 19 C -0.55 -28.00 8.22 25.60 0.21 -27.79 16 20 H 0.06 3.03 7.56 -2.91 -0.02 3.01 16 21 C 0.03 1.60 5.29 84.65 0.45 2.05 16 22 N -0.91 -46.48 10.69 21.45 0.23 -46.25 16 23 Si 0.96 40.52 29.54 68.60 2.03 42.55 16 24 H -0.27 -11.18 7.11 99.48 0.71 -10.48 16 25 H -0.28 -11.74 7.11 99.48 0.71 -11.03 16 26 H -0.28 -11.77 7.11 99.48 0.71 -11.06 16 27 C 0.13 5.35 5.14 86.73 0.45 5.80 16 28 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 29 H 0.10 1.93 6.35 -2.38 -0.02 1.91 16 30 H 0.06 1.58 6.66 -2.39 -0.02 1.57 16 31 H 0.39 8.33 9.01 -74.06 -0.67 7.66 16 32 H 0.07 1.87 7.70 -2.39 -0.02 1.85 16 33 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 34 H 0.08 1.51 7.77 -2.39 -0.02 1.50 16 35 H 0.09 1.44 6.29 -2.39 -0.02 1.42 16 36 H 0.13 2.04 8.06 -2.91 -0.02 2.02 16 37 H 0.14 1.65 8.06 -2.91 -0.02 1.63 16 38 H 0.14 1.51 8.06 -2.91 -0.02 1.49 16 39 H 0.14 1.67 8.06 -2.91 -0.02 1.65 16 40 H 0.13 2.06 8.06 -2.91 -0.02 2.04 16 41 H 0.07 2.56 7.99 -2.38 -0.02 2.54 16 42 H 0.06 2.42 8.14 -2.38 -0.02 2.40 16 43 H 0.05 2.50 8.04 -2.38 -0.02 2.48 16 44 H 0.07 3.38 7.64 -2.39 -0.02 3.36 16 45 H 0.38 19.04 7.28 -74.05 -0.54 18.50 16 46 H 0.27 13.13 8.31 -92.71 -0.77 12.36 16 47 H 0.08 3.24 6.37 -2.39 -0.02 3.22 16 48 H 0.07 2.86 6.26 -2.39 -0.01 2.85 16 Total: -1.00 -59.84 382.92 0.23 -59.61 By element: Atomic # 1 Polarization: 46.41 SS G_CDS: -0.22 Total: 46.18 kcal Atomic # 6 Polarization: -10.89 SS G_CDS: 4.32 Total: -6.57 kcal Atomic # 7 Polarization: -69.39 SS G_CDS: -2.47 Total: -71.86 kcal Atomic # 8 Polarization: -66.48 SS G_CDS: -3.43 Total: -69.91 kcal Atomic # 14 Polarization: 40.52 SS G_CDS: 2.03 Total: 42.55 kcal Total: -59.84 0.23 -59.61 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592851581.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.543 kcal (2) G-P(sol) polarization free energy of solvation -59.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.611 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds