Wall clock time and date at job start Tue Mar 31 2020 18:25:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50703 * 109.46912 * 2 1 4 4 C 1.38166 * 120.02488 * 264.72357 * 3 2 1 5 5 C 1.38248 * 120.05351 * 179.76676 * 4 3 2 6 6 C 1.38291 * 120.10961 * 0.51192 * 5 4 3 7 7 C 1.38122 * 120.05537 * 359.74632 * 6 5 4 8 8 C 1.38709 * 120.03079 * 85.00083 * 3 2 1 9 9 O 1.35908 * 120.05204 * 0.02562 * 8 3 2 10 10 C 1.42901 * 116.99819 * 180.02562 * 9 8 3 11 11 C 1.52998 * 109.47004 * 180.02562 * 10 9 8 12 12 C 1.50699 * 109.46945 * 179.97438 * 11 10 9 13 13 O 1.21277 * 120.00063 * 359.97438 * 12 11 10 14 14 N 1.34780 * 119.99899 * 179.97438 * 12 11 10 15 15 C 1.47421 * 125.64830 * 0.03115 * 14 12 11 16 16 C 1.54912 * 104.83155 * 204.08904 * 15 14 12 17 17 C 1.55162 * 101.58037 * 322.98730 * 16 15 14 18 18 O 1.42894 * 110.72153 * 276.96316 * 17 16 15 19 19 C 1.50696 * 110.71900 * 153.86604 * 17 16 15 20 20 H 1.08000 * 120.00132 * 241.45240 * 19 17 16 21 21 C 1.37879 * 120.00063 * 61.45307 * 19 17 16 22 22 N 1.31516 * 119.99837 * 0.02562 * 21 19 17 23 23 Si 1.86803 * 120.00063 * 180.02562 * 21 19 17 24 24 H 1.48495 * 109.47306 * 89.99788 * 23 21 19 25 25 H 1.48504 * 109.46967 * 210.00561 * 23 21 19 26 26 H 1.48507 * 109.46911 * 329.99850 * 23 21 19 27 27 C 1.47018 * 125.64703 * 179.71680 * 14 12 11 28 28 H 1.09001 * 109.47194 * 299.99742 * 1 2 3 29 29 H 1.08992 * 109.47399 * 59.99914 * 1 2 3 30 30 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47398 * 120.00078 * 2 1 3 32 32 H 1.09001 * 109.47194 * 240.00258 * 2 1 3 33 33 H 1.07999 * 119.97506 * 0.02562 * 4 3 2 34 34 H 1.08004 * 119.94663 * 180.25244 * 5 4 3 35 35 H 1.07995 * 119.97264 * 179.76370 * 6 5 4 36 36 H 1.08005 * 120.02522 * 180.02562 * 7 6 5 37 37 H 1.09005 * 109.46647 * 299.99888 * 10 9 8 38 38 H 1.08996 * 109.47147 * 59.99072 * 10 9 8 39 39 H 1.09008 * 109.46623 * 299.99306 * 11 10 9 40 40 H 1.08990 * 109.47484 * 59.99631 * 11 10 9 41 41 H 1.09003 * 110.36876 * 322.92125 * 15 14 12 42 42 H 1.08992 * 110.36845 * 85.24667 * 15 14 12 43 43 H 1.09001 * 111.00282 * 81.06346 * 16 15 14 44 44 H 1.08997 * 111.00220 * 204.87518 * 16 15 14 45 45 H 0.96703 * 114.00167 * 298.54788 * 18 17 16 46 46 H 0.96999 * 119.99687 * 180.02562 * 22 21 19 47 47 H 1.09000 * 109.88263 * 298.39683 * 27 14 12 48 48 H 1.09003 * 109.88335 * 59.56423 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.3664 2.0360 -1.1912 5 6 2.8227 3.3410 -1.1923 6 6 2.9559 4.0304 -0.0009 7 6 2.6282 3.4181 1.1930 8 6 2.1650 2.1102 1.1963 9 8 1.8428 1.5052 2.3699 10 6 2.0039 2.2756 3.5626 11 6 1.5953 1.4334 4.7728 12 6 1.7657 2.2457 6.0306 13 8 2.1742 3.3857 5.9656 14 7 1.4642 1.7052 7.2279 15 6 0.9614 0.3374 7.4510 16 6 0.2099 0.4069 8.8038 17 6 1.1045 1.3878 9.6070 18 8 2.2115 0.6990 10.1918 19 6 0.3007 2.0971 10.6661 20 1 0.2021 3.1723 10.6396 21 6 -0.3090 1.3735 11.6689 22 7 -0.1886 0.0642 11.7015 23 14 -1.3061 2.2526 12.9814 24 1 -2.7198 2.3603 12.5398 25 1 -1.2408 1.4841 14.2504 26 1 -0.7500 3.6126 13.1973 27 6 1.5884 2.3798 8.5282 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.8934 -0.5138 0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 2.2672 1.4984 -2.1226 34 1 3.0795 3.8216 -2.1249 35 1 3.3161 5.0485 -0.0041 36 1 2.7320 3.9571 2.1231 37 1 3.0472 2.5745 3.6639 38 1 1.3750 3.1643 3.5088 39 1 0.5520 1.1343 4.6716 40 1 2.2245 0.5451 4.8263 41 1 0.2782 0.0493 6.6520 42 1 1.7913 -0.3663 7.5137 43 1 -0.7937 0.8114 8.6729 44 1 0.1750 -0.5719 9.2821 45 1 1.9581 0.0101 10.8214 46 1 -0.6178 -0.4449 12.4068 47 1 2.6293 2.6480 8.7088 48 1 0.9650 3.2738 8.5431 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592852165.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:25:51 Heat of formation + Delta-G solvation = -110.949440 kcal Electronic energy + Delta-G solvation = -28241.702425 eV Core-core repulsion = 24261.289384 eV Total energy + Delta-G solvation = -3980.413041 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.49588 -39.59796 -37.81317 -37.23887 -34.40226 -34.34119 -32.26610 -32.11475 -30.26639 -29.76493 -29.09753 -28.34224 -25.68017 -24.30970 -23.96973 -22.43583 -21.75162 -21.11685 -19.76467 -18.82718 -18.20221 -17.28662 -16.60990 -16.48306 -16.17493 -15.79369 -15.37278 -15.01333 -14.98611 -14.52769 -14.23042 -14.10023 -14.02639 -13.75933 -13.40598 -13.25743 -13.01388 -12.66871 -12.27551 -12.18503 -12.08654 -11.88830 -11.79301 -11.66281 -11.53215 -11.42193 -11.39638 -11.05901 -10.92678 -10.83851 -10.76264 -10.67803 -10.52699 -10.17114 -9.60795 -9.39470 -9.03896 -8.72363 -8.28883 -8.28454 -8.12080 -6.33509 -4.41051 1.12865 1.26612 2.80670 2.90909 3.16936 3.24759 3.29127 3.56695 3.65660 4.23228 4.51566 4.59540 4.67979 4.84641 4.87440 4.93159 4.97688 4.99995 5.04169 5.23547 5.24199 5.33519 5.39678 5.45682 5.50547 5.62794 5.68401 5.70853 5.73940 5.79646 5.85541 5.89613 5.95408 6.09546 6.14491 6.19696 6.29069 6.35211 6.38192 6.60686 6.61856 6.83138 6.88561 7.23349 7.26705 7.29247 7.68414 7.96305 7.98869 8.46305 8.61675 9.24977 9.34088 10.74076 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.024472 B = 0.002090 C = 0.002015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1143.871364 B =13394.116599 C =13894.531490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.075 4.075 3 C -0.116 4.116 4 C -0.084 4.084 5 C -0.159 4.159 6 C -0.085 4.085 7 C -0.206 4.206 8 C 0.137 3.863 9 O -0.313 6.313 10 C 0.077 3.923 11 C -0.134 4.134 12 C 0.527 3.473 13 O -0.558 6.558 14 N -0.605 5.605 15 C 0.092 3.908 16 C -0.135 4.135 17 C 0.247 3.753 18 O -0.586 6.586 19 C -0.535 4.535 20 H 0.064 0.936 21 C 0.072 3.928 22 N -0.896 5.896 23 Si 0.903 3.097 24 H -0.279 1.279 25 H -0.284 1.284 26 H -0.272 1.272 27 C 0.122 3.878 28 H 0.058 0.942 29 H 0.051 0.949 30 H 0.056 0.944 31 H 0.076 0.924 32 H 0.067 0.933 33 H 0.126 0.874 34 H 0.121 0.879 35 H 0.123 0.877 36 H 0.132 0.868 37 H 0.071 0.929 38 H 0.071 0.929 39 H 0.102 0.898 40 H 0.102 0.898 41 H 0.062 0.938 42 H 0.065 0.935 43 H 0.067 0.933 44 H 0.089 0.911 45 H 0.383 0.617 46 H 0.268 0.732 47 H 0.062 0.938 48 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.156 -1.215 -22.109 22.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.113 4.113 3 C -0.117 4.117 4 C -0.102 4.102 5 C -0.178 4.178 6 C -0.103 4.103 7 C -0.224 4.224 8 C 0.092 3.908 9 O -0.227 6.227 10 C 0.001 3.999 11 C -0.174 4.174 12 C 0.315 3.685 13 O -0.438 6.438 14 N -0.337 5.337 15 C -0.030 4.030 16 C -0.173 4.173 17 C 0.206 3.794 18 O -0.394 6.394 19 C -0.573 4.573 20 H 0.082 0.918 21 C -0.130 4.130 22 N -0.535 5.535 23 Si 0.731 3.269 24 H -0.205 1.205 25 H -0.210 1.210 26 H -0.197 1.197 27 C 0.001 3.999 28 H 0.077 0.923 29 H 0.070 0.930 30 H 0.075 0.925 31 H 0.094 0.906 32 H 0.086 0.914 33 H 0.144 0.856 34 H 0.139 0.861 35 H 0.141 0.859 36 H 0.149 0.851 37 H 0.089 0.911 38 H 0.089 0.911 39 H 0.120 0.880 40 H 0.120 0.880 41 H 0.081 0.919 42 H 0.083 0.917 43 H 0.086 0.914 44 H 0.108 0.892 45 H 0.233 0.767 46 H 0.078 0.922 47 H 0.080 0.920 48 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 2.598 -0.533 -22.422 22.578 hybrid contribution -0.858 0.213 1.226 1.511 sum 1.741 -0.320 -21.197 21.270 Atomic orbital electron populations 1.21711 0.94818 1.01582 1.02074 1.20359 0.96176 0.92021 1.02718 1.19277 1.04619 0.97332 0.90467 1.20859 0.97849 0.94835 0.96664 1.21022 1.03548 0.95149 0.98054 1.20946 0.97855 0.99616 0.91906 1.21384 1.06158 0.94979 0.99900 1.18806 0.95165 0.91269 0.85605 1.85976 1.81908 1.41906 1.12868 1.22455 1.02203 0.93840 0.81390 1.21417 1.05000 0.99871 0.91117 1.19761 0.78130 0.86891 0.83734 1.90679 1.47606 1.18698 1.86776 1.48619 1.63261 1.15632 1.06192 1.22574 0.97810 0.82871 0.99781 1.23309 0.98902 1.02882 0.92242 1.19473 0.83272 0.87641 0.88976 1.86133 1.35278 1.55246 1.62793 1.21500 1.31267 0.94201 1.10348 0.91761 1.24988 0.95512 0.94951 0.97577 1.69690 1.44522 1.05304 1.33990 0.86407 0.80113 0.79802 0.80623 1.20467 1.20989 1.19674 1.22100 1.01088 0.96201 0.80520 0.92297 0.92969 0.92512 0.90578 0.91405 0.85637 0.86097 0.85903 0.85062 0.91088 0.91057 0.87967 0.87998 0.91919 0.91705 0.91384 0.89245 0.76716 0.92177 0.91987 0.90870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.24 9.89 37.16 0.37 -0.87 16 2 C -0.08 -0.68 5.79 -27.88 -0.16 -0.84 16 3 C -0.12 -1.23 5.15 -104.47 -0.54 -1.76 16 4 C -0.08 -0.76 9.68 -39.60 -0.38 -1.15 16 5 C -0.16 -1.42 10.04 -39.56 -0.40 -1.81 16 6 C -0.09 -0.83 10.04 -39.60 -0.40 -1.23 16 7 C -0.21 -2.33 9.04 -39.44 -0.36 -2.69 16 8 C 0.14 1.64 6.66 -39.22 -0.26 1.38 16 9 O -0.31 -3.89 9.27 -19.45 -0.18 -4.07 16 10 C 0.08 0.97 4.03 37.16 0.15 1.12 16 11 C -0.13 -1.74 5.08 -27.88 -0.14 -1.88 16 12 C 0.53 9.26 7.85 -10.98 -0.09 9.18 16 13 O -0.56 -11.45 16.31 5.56 0.09 -11.35 16 14 N -0.60 -11.42 3.33 -170.52 -0.57 -11.99 16 15 C 0.09 1.57 6.68 -2.53 -0.02 1.56 16 16 C -0.13 -2.79 5.47 -24.58 -0.13 -2.92 16 17 C 0.25 5.77 0.85 -89.93 -0.08 5.70 16 18 O -0.59 -14.30 13.07 -35.23 -0.46 -14.76 16 19 C -0.53 -13.69 8.22 -34.44 -0.28 -13.98 16 20 H 0.06 1.66 7.58 -52.49 -0.40 1.26 16 21 C 0.07 1.82 5.28 -17.82 -0.09 1.73 16 22 N -0.90 -22.45 10.67 55.43 0.59 -21.85 16 23 Si 0.90 19.94 29.54 -169.99 -5.02 14.92 16 24 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 25 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 26 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 27 C 0.12 2.69 6.23 -3.06 -0.02 2.67 16 28 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 30 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.08 0.74 7.69 -51.93 -0.40 0.34 16 32 H 0.07 0.50 8.05 -51.93 -0.42 0.08 16 33 H 0.13 0.85 8.06 -52.49 -0.42 0.42 16 34 H 0.12 0.80 8.06 -52.48 -0.42 0.37 16 35 H 0.12 0.95 8.06 -52.49 -0.42 0.52 16 36 H 0.13 1.46 6.30 -52.48 -0.33 1.13 16 37 H 0.07 0.92 7.62 -51.93 -0.40 0.53 16 38 H 0.07 0.93 7.62 -51.93 -0.40 0.53 16 39 H 0.10 1.19 7.85 -51.92 -0.41 0.78 16 40 H 0.10 1.19 8.14 -51.93 -0.42 0.77 16 41 H 0.06 0.88 7.48 -51.93 -0.39 0.49 16 42 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 43 H 0.07 1.45 8.04 -51.93 -0.42 1.03 16 44 H 0.09 1.92 7.54 -51.93 -0.39 1.53 16 45 H 0.38 9.32 7.46 45.56 0.34 9.66 16 46 H 0.27 6.47 8.31 -40.82 -0.34 6.13 16 47 H 0.06 1.42 8.07 -51.93 -0.42 1.00 16 48 H 0.07 1.64 7.66 -51.93 -0.40 1.24 16 LS Contribution 391.61 15.07 5.90 5.90 Total: -1.00 -28.22 391.61 -9.41 -37.62 By element: Atomic # 1 Polarization: 18.33 SS G_CDS: -6.94 Total: 11.39 kcal Atomic # 6 Polarization: -2.97 SS G_CDS: -2.83 Total: -5.80 kcal Atomic # 7 Polarization: -33.87 SS G_CDS: 0.02 Total: -33.84 kcal Atomic # 8 Polarization: -29.64 SS G_CDS: -0.55 Total: -30.19 kcal Atomic # 14 Polarization: 19.94 SS G_CDS: -5.02 Total: 14.92 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -28.22 -9.41 -37.62 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592852165.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.325 kcal (2) G-P(sol) polarization free energy of solvation -28.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.624 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds