Wall clock time and date at job start Tue Mar 31 2020 18:25:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50703 * 109.46912 * 2 1 4 4 C 1.38166 * 120.02488 * 264.72357 * 3 2 1 5 5 C 1.38248 * 120.05351 * 179.76676 * 4 3 2 6 6 C 1.38291 * 120.10961 * 0.51192 * 5 4 3 7 7 C 1.38122 * 120.05537 * 359.74632 * 6 5 4 8 8 C 1.38709 * 120.03079 * 85.00083 * 3 2 1 9 9 O 1.35908 * 120.05204 * 0.02562 * 8 3 2 10 10 C 1.42901 * 116.99819 * 180.02562 * 9 8 3 11 11 C 1.52998 * 109.47004 * 180.02562 * 10 9 8 12 12 C 1.50699 * 109.46945 * 179.97438 * 11 10 9 13 13 O 1.21277 * 120.00063 * 359.97438 * 12 11 10 14 14 N 1.34780 * 119.99899 * 179.97438 * 12 11 10 15 15 C 1.47421 * 125.64830 * 0.03115 * 14 12 11 16 16 C 1.54912 * 104.83155 * 204.08904 * 15 14 12 17 17 C 1.55162 * 101.58037 * 322.98730 * 16 15 14 18 18 O 1.42894 * 110.72153 * 276.96316 * 17 16 15 19 19 C 1.50696 * 110.71900 * 153.86604 * 17 16 15 20 20 H 1.08000 * 120.00132 * 241.45240 * 19 17 16 21 21 C 1.37879 * 120.00063 * 61.45307 * 19 17 16 22 22 N 1.31516 * 119.99837 * 0.02562 * 21 19 17 23 23 Si 1.86803 * 120.00063 * 180.02562 * 21 19 17 24 24 H 1.48495 * 109.47306 * 89.99788 * 23 21 19 25 25 H 1.48504 * 109.46967 * 210.00561 * 23 21 19 26 26 H 1.48507 * 109.46911 * 329.99850 * 23 21 19 27 27 C 1.47018 * 125.64703 * 179.71680 * 14 12 11 28 28 H 1.09001 * 109.47194 * 299.99742 * 1 2 3 29 29 H 1.08992 * 109.47399 * 59.99914 * 1 2 3 30 30 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47398 * 120.00078 * 2 1 3 32 32 H 1.09001 * 109.47194 * 240.00258 * 2 1 3 33 33 H 1.07999 * 119.97506 * 0.02562 * 4 3 2 34 34 H 1.08004 * 119.94663 * 180.25244 * 5 4 3 35 35 H 1.07995 * 119.97264 * 179.76370 * 6 5 4 36 36 H 1.08005 * 120.02522 * 180.02562 * 7 6 5 37 37 H 1.09005 * 109.46647 * 299.99888 * 10 9 8 38 38 H 1.08996 * 109.47147 * 59.99072 * 10 9 8 39 39 H 1.09008 * 109.46623 * 299.99306 * 11 10 9 40 40 H 1.08990 * 109.47484 * 59.99631 * 11 10 9 41 41 H 1.09003 * 110.36876 * 322.92125 * 15 14 12 42 42 H 1.08992 * 110.36845 * 85.24667 * 15 14 12 43 43 H 1.09001 * 111.00282 * 81.06346 * 16 15 14 44 44 H 1.08997 * 111.00220 * 204.87518 * 16 15 14 45 45 H 0.96703 * 114.00167 * 298.54788 * 18 17 16 46 46 H 0.96999 * 119.99687 * 180.02562 * 22 21 19 47 47 H 1.09000 * 109.88263 * 298.39683 * 27 14 12 48 48 H 1.09003 * 109.88335 * 59.56423 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.3664 2.0360 -1.1912 5 6 2.8227 3.3410 -1.1923 6 6 2.9559 4.0304 -0.0009 7 6 2.6282 3.4181 1.1930 8 6 2.1650 2.1102 1.1963 9 8 1.8428 1.5052 2.3699 10 6 2.0039 2.2756 3.5626 11 6 1.5953 1.4334 4.7728 12 6 1.7657 2.2457 6.0306 13 8 2.1742 3.3857 5.9656 14 7 1.4642 1.7052 7.2279 15 6 0.9614 0.3374 7.4510 16 6 0.2099 0.4069 8.8038 17 6 1.1045 1.3878 9.6070 18 8 2.2115 0.6990 10.1918 19 6 0.3007 2.0971 10.6661 20 1 0.2021 3.1723 10.6396 21 6 -0.3090 1.3735 11.6689 22 7 -0.1886 0.0642 11.7015 23 14 -1.3061 2.2526 12.9814 24 1 -2.7198 2.3603 12.5398 25 1 -1.2408 1.4841 14.2504 26 1 -0.7500 3.6126 13.1973 27 6 1.5884 2.3798 8.5282 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.8934 -0.5138 0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 2.2672 1.4984 -2.1226 34 1 3.0795 3.8216 -2.1249 35 1 3.3161 5.0485 -0.0041 36 1 2.7320 3.9571 2.1231 37 1 3.0472 2.5745 3.6639 38 1 1.3750 3.1643 3.5088 39 1 0.5520 1.1343 4.6716 40 1 2.2245 0.5451 4.8263 41 1 0.2782 0.0493 6.6520 42 1 1.7913 -0.3663 7.5137 43 1 -0.7937 0.8114 8.6729 44 1 0.1750 -0.5719 9.2821 45 1 1.9581 0.0101 10.8214 46 1 -0.6178 -0.4449 12.4068 47 1 2.6293 2.6480 8.7088 48 1 0.9650 3.2738 8.5431 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592852165.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:25:49 Heat of formation + Delta-G solvation = -127.087667 kcal Electronic energy + Delta-G solvation = -28242.402231 eV Core-core repulsion = 24261.289384 eV Total energy + Delta-G solvation = -3981.112847 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.43607 -40.97462 -39.15777 -38.39963 -36.13429 -35.04573 -34.21645 -33.25071 -31.39375 -30.96740 -30.14643 -29.75599 -27.31916 -25.53100 -24.74951 -23.84527 -22.68066 -21.93094 -21.47779 -20.19641 -19.28883 -19.04422 -17.91574 -17.58723 -17.08316 -16.93762 -16.74035 -16.59294 -16.30720 -16.00592 -15.40831 -15.22193 -14.93247 -14.70268 -14.69367 -14.33221 -14.16070 -13.89389 -13.81217 -13.42230 -13.29579 -13.24126 -13.12728 -12.92244 -12.69851 -12.63198 -12.62078 -12.44875 -12.34804 -12.29081 -11.99586 -11.82142 -11.67772 -11.51730 -11.29359 -11.03149 -10.63965 -10.15443 -9.78336 -9.68286 -9.08495 -8.25715 -6.39748 0.38126 0.49696 1.40307 1.43876 1.50814 1.52306 1.67035 2.35573 2.44182 2.81687 2.99803 3.48549 3.71496 3.81228 3.85628 3.88067 3.97045 3.99585 4.16121 4.21754 4.28339 4.35167 4.37338 4.44005 4.55727 4.56598 4.57944 4.63537 4.67171 4.69497 4.72241 4.85415 4.90529 5.05488 5.13657 5.16002 5.20206 5.21170 5.42772 5.45682 5.46081 5.53596 5.56951 5.62552 5.75743 5.88552 6.07008 6.39867 6.52661 6.64003 7.02276 7.30211 7.39612 8.80165 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.024472 B = 0.002090 C = 0.002015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1143.871364 B =13394.116599 C =13894.531490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.075 4.075 3 C -0.126 4.126 4 C -0.085 4.085 5 C -0.157 4.157 6 C -0.095 4.095 7 C -0.223 4.223 8 C 0.110 3.890 9 O -0.316 6.316 10 C 0.084 3.916 11 C -0.120 4.120 12 C 0.525 3.475 13 O -0.592 6.592 14 N -0.609 5.609 15 C 0.101 3.899 16 C -0.126 4.126 17 C 0.234 3.766 18 O -0.593 6.593 19 C -0.563 4.563 20 H 0.050 0.950 21 C 0.038 3.962 22 N -0.904 5.904 23 Si 0.957 3.043 24 H -0.273 1.273 25 H -0.278 1.278 26 H -0.278 1.278 27 C 0.129 3.871 28 H 0.040 0.960 29 H 0.057 0.943 30 H 0.068 0.932 31 H 0.065 0.935 32 H 0.087 0.913 33 H 0.153 0.847 34 H 0.148 0.852 35 H 0.139 0.861 36 H 0.123 0.877 37 H 0.062 0.938 38 H 0.062 0.938 39 H 0.125 0.875 40 H 0.124 0.876 41 H 0.104 0.896 42 H 0.076 0.924 43 H 0.057 0.943 44 H 0.081 0.919 45 H 0.380 0.620 46 H 0.272 0.728 47 H 0.044 0.956 48 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.622 -2.351 -24.447 24.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.112 4.112 3 C -0.126 4.126 4 C -0.103 4.103 5 C -0.175 4.175 6 C -0.113 4.113 7 C -0.242 4.242 8 C 0.065 3.935 9 O -0.230 6.230 10 C 0.008 3.992 11 C -0.160 4.160 12 C 0.315 3.685 13 O -0.474 6.474 14 N -0.341 5.341 15 C -0.020 4.020 16 C -0.165 4.165 17 C 0.194 3.806 18 O -0.402 6.402 19 C -0.601 4.601 20 H 0.068 0.932 21 C -0.163 4.163 22 N -0.543 5.543 23 Si 0.783 3.217 24 H -0.199 1.199 25 H -0.203 1.203 26 H -0.204 1.204 27 C 0.006 3.994 28 H 0.059 0.941 29 H 0.076 0.924 30 H 0.087 0.913 31 H 0.084 0.916 32 H 0.106 0.894 33 H 0.171 0.829 34 H 0.166 0.834 35 H 0.157 0.843 36 H 0.141 0.859 37 H 0.080 0.920 38 H 0.081 0.919 39 H 0.143 0.857 40 H 0.142 0.858 41 H 0.122 0.878 42 H 0.094 0.906 43 H 0.076 0.924 44 H 0.099 0.901 45 H 0.230 0.770 46 H 0.081 0.919 47 H 0.062 0.938 48 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 2.061 -1.689 -24.781 24.924 hybrid contribution -0.650 0.618 1.898 2.099 sum 1.412 -1.071 -22.883 22.952 Atomic orbital electron populations 1.21684 0.94530 1.02187 1.01470 1.20392 0.96367 0.91250 1.03180 1.19584 1.04557 0.98088 0.90415 1.21234 0.96820 0.95081 0.97177 1.21396 1.02260 0.95146 0.98717 1.21234 0.97694 1.00559 0.91769 1.21481 1.07116 0.95179 1.00418 1.19098 0.96659 0.91893 0.85840 1.85936 1.82337 1.41800 1.12880 1.22263 1.01481 0.93606 0.81827 1.21346 1.06856 0.99450 0.88315 1.20561 0.76742 0.86756 0.84421 1.90664 1.48935 1.20547 1.87267 1.48664 1.63801 1.16154 1.05492 1.22608 0.98500 0.81959 0.98970 1.23084 0.98197 1.01311 0.93879 1.19611 0.83378 0.88517 0.89103 1.86118 1.35962 1.55241 1.62858 1.21710 1.32572 0.93855 1.11979 0.93202 1.25563 0.96175 0.95680 0.98931 1.69741 1.44461 1.05761 1.34294 0.85573 0.78959 0.78497 0.78661 1.19901 1.20337 1.20351 1.21795 0.99529 0.95852 0.82267 0.94052 0.92389 0.91296 0.91604 0.89430 0.82943 0.83425 0.84268 0.85892 0.91996 0.91950 0.85690 0.85823 0.87759 0.90603 0.92399 0.90081 0.77006 0.91867 0.93779 0.92233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.16 9.89 71.98 0.71 -1.45 16 2 C -0.07 -1.20 5.79 29.85 0.17 -1.03 16 3 C -0.13 -2.45 5.15 -19.77 -0.10 -2.55 16 4 C -0.09 -1.33 9.68 22.26 0.22 -1.11 16 5 C -0.16 -2.40 10.04 22.28 0.22 -2.18 16 6 C -0.09 -1.73 10.04 22.25 0.22 -1.51 16 7 C -0.22 -5.06 9.04 22.36 0.20 -4.85 16 8 C 0.11 2.58 6.66 22.50 0.15 2.73 16 9 O -0.32 -7.64 9.27 -92.51 -0.86 -8.50 16 10 C 0.08 2.10 4.03 71.98 0.29 2.39 16 11 C -0.12 -2.90 5.08 29.85 0.15 -2.75 16 12 C 0.52 18.13 7.85 87.66 0.69 18.82 16 13 O -0.59 -24.71 16.31 -3.02 -0.05 -24.76 16 14 N -0.61 -22.64 3.33 -811.79 -2.70 -25.34 16 15 C 0.10 3.25 6.68 86.86 0.58 3.83 16 16 C -0.13 -5.15 5.47 31.99 0.17 -4.98 16 17 C 0.23 11.13 0.85 -10.35 -0.01 11.12 16 18 O -0.59 -29.41 13.07 -148.98 -1.95 -31.36 16 19 C -0.56 -29.47 8.22 25.60 0.21 -29.26 16 20 H 0.05 2.67 7.58 -2.91 -0.02 2.65 16 21 C 0.04 1.93 5.28 84.65 0.45 2.38 16 22 N -0.90 -45.15 10.67 21.45 0.23 -44.92 16 23 Si 0.96 40.95 29.54 68.60 2.03 42.98 16 24 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 25 H -0.28 -11.56 7.11 99.48 0.71 -10.85 16 26 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16 27 C 0.13 5.79 6.23 86.73 0.54 6.33 16 28 H 0.04 0.77 8.14 -2.39 -0.02 0.75 16 29 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 30 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 31 H 0.07 1.19 7.69 -2.39 -0.02 1.17 16 32 H 0.09 1.04 8.05 -2.39 -0.02 1.02 16 33 H 0.15 1.49 8.06 -2.91 -0.02 1.46 16 34 H 0.15 1.42 8.06 -2.91 -0.02 1.40 16 35 H 0.14 1.96 8.06 -2.91 -0.02 1.94 16 36 H 0.12 2.86 6.30 -2.91 -0.02 2.85 16 37 H 0.06 1.64 7.62 -2.38 -0.02 1.62 16 38 H 0.06 1.65 7.62 -2.39 -0.02 1.63 16 39 H 0.13 2.51 7.85 -2.38 -0.02 2.49 16 40 H 0.12 2.52 8.14 -2.39 -0.02 2.50 16 41 H 0.10 2.53 7.48 -2.39 -0.02 2.51 16 42 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 43 H 0.06 2.45 8.04 -2.39 -0.02 2.43 16 44 H 0.08 3.44 7.54 -2.39 -0.02 3.42 16 45 H 0.38 18.79 7.46 -74.06 -0.55 18.24 16 46 H 0.27 12.93 8.31 -92.71 -0.77 12.16 16 47 H 0.04 2.10 8.07 -2.39 -0.02 2.08 16 48 H 0.06 2.79 7.66 -2.39 -0.02 2.77 16 Total: -1.00 -61.89 391.61 1.98 -59.91 By element: Atomic # 1 Polarization: 35.65 SS G_CDS: 0.40 Total: 36.06 kcal Atomic # 6 Polarization: -8.93 SS G_CDS: 4.87 Total: -4.06 kcal Atomic # 7 Polarization: -67.79 SS G_CDS: -2.47 Total: -70.26 kcal Atomic # 8 Polarization: -61.76 SS G_CDS: -2.85 Total: -64.62 kcal Atomic # 14 Polarization: 40.95 SS G_CDS: 2.03 Total: 42.98 kcal Total: -61.89 1.98 -59.91 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592852165.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.178 kcal (2) G-P(sol) polarization free energy of solvation -61.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.909 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds