Wall clock time and date at job start Tue Mar 31 2020 17:31:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38234 * 119.99708 * 2 1 4 4 C 1.38242 * 119.99508 * 180.02562 * 3 2 1 5 5 C 1.38232 * 120.00018 * 359.97438 * 4 3 2 6 6 C 1.50704 * 119.99563 * 179.97438 * 5 4 3 7 7 O 1.42902 * 109.47171 * 90.00188 * 6 5 4 8 8 C 1.42898 * 113.99900 * 179.97438 * 7 6 5 9 9 H 1.08996 * 109.47058 * 29.99592 * 8 7 6 10 10 C 1.52995 * 109.47076 * 269.99890 * 8 7 6 11 11 C 1.50694 * 109.47022 * 149.99808 * 8 7 6 12 12 O 1.21279 * 120.00448 * 4.99678 * 11 8 7 13 13 N 1.34776 * 120.00086 * 185.00120 * 11 8 7 14 14 C 1.47427 * 125.64653 * 359.97172 * 13 11 8 15 15 C 1.54909 * 104.83126 * 155.92067 * 14 13 11 16 16 C 1.55155 * 101.58319 * 37.00899 * 15 14 13 17 17 O 1.42903 * 110.71521 * 82.86218 * 16 15 14 18 18 C 1.50694 * 110.72177 * 205.95503 * 16 15 14 19 19 H 1.07994 * 119.99866 * 116.15664 * 18 16 15 20 20 C 1.37880 * 120.00331 * 296.15939 * 18 16 15 21 21 N 1.31512 * 119.99598 * 0.02562 * 20 18 16 22 22 Si 1.86801 * 120.00162 * 179.97438 * 20 18 16 23 23 H 1.48498 * 109.47018 * 90.00096 * 22 20 18 24 24 H 1.48498 * 109.46939 * 209.99953 * 22 20 18 25 25 H 1.48502 * 109.46753 * 330.00017 * 22 20 18 26 26 C 1.47018 * 125.65438 * 180.02562 * 13 11 8 27 27 C 1.38232 * 120.00092 * 0.25201 * 5 4 3 28 28 C 1.38232 * 119.99818 * 180.02562 * 2 1 3 29 29 H 1.09000 * 109.47244 * 90.00139 * 1 2 3 30 30 H 1.08999 * 109.47250 * 210.00669 * 1 2 3 31 31 H 1.09003 * 109.47039 * 330.00310 * 1 2 3 32 32 H 1.08000 * 120.00666 * 359.97438 * 3 2 1 33 33 H 1.08001 * 119.99678 * 179.97438 * 4 3 2 34 34 H 1.08993 * 109.46984 * 329.99610 * 6 5 4 35 35 H 1.09006 * 109.46632 * 210.00270 * 6 5 4 36 36 H 1.09008 * 109.47586 * 59.99785 * 10 8 7 37 37 H 1.08997 * 109.47531 * 180.02562 * 10 8 7 38 38 H 1.09001 * 109.47535 * 300.00127 * 10 8 7 39 39 H 1.09000 * 110.36621 * 37.08053 * 14 13 11 40 40 H 1.09000 * 110.46011 * 274.80656 * 14 13 11 41 41 H 1.09002 * 111.00456 * 278.93003 * 15 14 13 42 42 H 1.09007 * 111.03839 * 155.10257 * 15 14 13 43 43 H 0.96700 * 114.00311 * 61.45661 * 17 16 15 44 44 H 0.97002 * 119.99961 * 180.02562 * 21 20 18 45 45 H 1.09002 * 109.88150 * 61.58744 * 26 13 11 46 46 H 1.09002 * 109.88190 * 300.43189 * 26 13 11 47 47 H 1.07996 * 119.99818 * 179.72380 * 27 5 4 48 48 H 1.07996 * 120.00265 * 0.02562 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1972 0.0000 4 6 3.5806 1.1971 -0.0005 5 6 4.2717 0.0000 -0.0005 6 6 5.7787 0.0000 -0.0017 7 8 6.2561 0.0006 1.3452 8 6 7.6807 0.0002 1.4569 9 1 8.1127 0.5133 0.5978 10 6 8.1886 -1.4425 1.4976 11 6 8.0856 0.7111 2.7224 12 8 7.2380 1.0930 3.5012 13 7 9.3897 0.9228 2.9887 14 6 10.5187 0.5132 2.1338 15 6 11.6722 1.4754 2.5123 16 6 11.4587 1.6315 4.0412 17 8 12.0534 0.5416 4.7486 18 6 12.0144 2.9458 4.5257 19 1 11.3531 3.6909 4.9424 20 6 13.3672 3.1970 4.4369 21 7 14.1725 2.2898 3.9289 22 14 14.0560 4.8264 5.0369 23 1 14.4239 4.7103 6.4709 24 1 15.2614 5.1765 4.2434 25 1 13.0302 5.8876 4.8734 26 6 9.9221 1.5994 4.1804 27 6 3.5805 -1.1971 -0.0053 28 6 2.1982 -1.1971 -0.0005 29 1 -0.3634 0.0000 -1.0277 30 1 -0.3634 -0.8899 0.5139 31 1 -0.3633 0.8900 0.5138 32 1 1.6582 2.1325 -0.0004 33 1 4.1205 2.1325 -0.0010 34 1 6.1416 0.8897 -0.5162 35 1 6.1416 -0.8902 -0.5155 36 1 7.8957 -1.9568 0.5822 37 1 9.2752 -1.4429 1.5833 38 1 7.7566 -1.9557 2.3568 39 1 10.2588 0.6280 1.0815 40 1 10.8009 -0.5185 2.3437 41 1 11.5652 2.4331 2.0030 42 1 12.6423 1.0271 2.2970 43 1 13.0106 0.4712 4.6300 44 1 15.1243 2.4663 3.8668 45 1 9.6426 1.0459 5.0769 46 1 9.5334 2.6164 4.2340 47 1 4.1205 -2.1324 -0.0098 48 1 1.6582 -2.1324 -0.0014 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000600063241.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:31:59 Heat of formation + Delta-G solvation = -108.047223 kcal Electronic energy + Delta-G solvation = -28391.054157 eV Core-core repulsion = 24410.766966 eV Total energy + Delta-G solvation = -3980.287191 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -39.97169 -39.52232 -37.95261 -36.85130 -34.41040 -33.61245 -32.21684 -31.52666 -31.10969 -29.54160 -28.58483 -28.18901 -25.52211 -24.81268 -23.69885 -22.90672 -21.99109 -21.00694 -19.89264 -18.93007 -17.48366 -17.02446 -16.62145 -16.14934 -15.94048 -15.41156 -15.22135 -15.04544 -14.91776 -14.63741 -14.21834 -14.00388 -13.64560 -13.58899 -13.28037 -13.03665 -12.97635 -12.73039 -12.51054 -12.25597 -12.11786 -12.01220 -11.89086 -11.75786 -11.36630 -11.34034 -11.33606 -11.14427 -11.00509 -10.88377 -10.66896 -10.49165 -10.14858 -9.88659 -9.45556 -9.15917 -9.08175 -8.77377 -8.68469 -8.25891 -8.04069 -6.32098 -4.38814 1.05057 1.24616 3.00094 3.05101 3.18828 3.26160 3.30211 3.57512 4.10152 4.25138 4.56919 4.58346 4.70265 4.82761 4.83421 4.88051 4.95249 4.96476 5.08724 5.15038 5.26422 5.30079 5.33294 5.45679 5.52919 5.53739 5.59809 5.61199 5.73977 5.84820 5.87878 5.89043 5.94261 6.09167 6.19471 6.21352 6.38975 6.43009 6.43773 6.65775 6.81225 6.84937 6.88960 7.08681 7.25068 7.29887 7.70642 7.99122 8.06071 8.60926 8.64891 9.28324 9.38547 10.75892 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.026127 B = 0.002127 C = 0.002048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1071.438140 B =13159.859598 C =13668.450046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.084 4.084 3 C -0.124 4.124 4 C -0.091 4.091 5 C -0.092 4.092 6 C 0.100 3.900 7 O -0.350 6.350 8 C 0.076 3.924 9 H 0.083 0.917 10 C -0.173 4.173 11 C 0.523 3.477 12 O -0.533 6.533 13 N -0.607 5.607 14 C 0.093 3.907 15 C -0.137 4.137 16 C 0.248 3.752 17 O -0.585 6.585 18 C -0.533 4.533 19 H 0.065 0.935 20 C 0.072 3.928 21 N -0.897 5.897 22 Si 0.903 3.097 23 H -0.278 1.278 24 H -0.285 1.285 25 H -0.272 1.272 26 C 0.124 3.876 27 C -0.093 4.093 28 C -0.126 4.126 29 H 0.069 0.931 30 H 0.066 0.934 31 H 0.066 0.934 32 H 0.123 0.877 33 H 0.124 0.876 34 H 0.058 0.942 35 H 0.059 0.941 36 H 0.065 0.935 37 H 0.079 0.921 38 H 0.069 0.931 39 H 0.059 0.941 40 H 0.066 0.934 41 H 0.067 0.933 42 H 0.088 0.912 43 H 0.384 0.616 44 H 0.268 0.732 45 H 0.062 0.938 46 H 0.072 0.928 47 H 0.123 0.877 48 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.759 -7.058 -13.208 22.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.084 4.084 3 C -0.142 4.142 4 C -0.109 4.109 5 C -0.092 4.092 6 C 0.023 3.977 7 O -0.268 6.268 8 C 0.014 3.986 9 H 0.101 0.899 10 C -0.231 4.231 11 C 0.310 3.690 12 O -0.410 6.410 13 N -0.341 5.341 14 C -0.030 4.030 15 C -0.175 4.175 16 C 0.207 3.793 17 O -0.395 6.395 18 C -0.572 4.572 19 H 0.083 0.917 20 C -0.130 4.130 21 N -0.537 5.537 22 Si 0.731 3.269 23 H -0.204 1.204 24 H -0.211 1.211 25 H -0.197 1.197 26 C 0.003 3.997 27 C -0.112 4.112 28 C -0.144 4.144 29 H 0.088 0.912 30 H 0.085 0.915 31 H 0.085 0.915 32 H 0.141 0.859 33 H 0.142 0.858 34 H 0.077 0.923 35 H 0.077 0.923 36 H 0.084 0.916 37 H 0.098 0.902 38 H 0.088 0.912 39 H 0.077 0.923 40 H 0.084 0.916 41 H 0.086 0.914 42 H 0.106 0.894 43 H 0.234 0.766 44 H 0.078 0.922 45 H 0.080 0.920 46 H 0.090 0.910 47 H 0.141 0.859 48 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -17.861 -6.995 -12.504 22.897 hybrid contribution 1.355 0.935 -0.172 1.655 sum -16.506 -6.060 -12.675 21.676 Atomic orbital electron populations 1.20802 0.91230 1.02869 1.02230 1.19968 0.96092 0.93287 0.99047 1.21024 0.94051 0.97619 1.01530 1.21090 0.94206 0.97723 0.97879 1.19547 0.94061 0.93618 1.01966 1.21406 0.90740 1.00890 0.84638 1.88134 1.18787 1.94957 1.24922 1.21841 0.82873 0.96858 0.96984 0.89908 1.22288 1.02627 0.94906 1.03257 1.19848 0.81410 0.80199 0.87566 1.90687 1.49588 1.51391 1.49285 1.48566 1.04438 1.57220 1.23911 1.22588 0.87684 0.99617 0.93092 1.23333 0.96333 0.97669 1.00203 1.19451 0.86345 0.86210 0.87253 1.86128 1.27344 1.51987 1.73996 1.21517 0.93168 1.00545 1.41941 0.91729 1.24980 0.96784 0.97430 0.93820 1.69639 1.04618 1.34529 1.44888 0.86406 0.78450 0.83181 0.78900 1.20373 1.21059 1.19716 1.22079 0.94939 0.96406 0.86304 1.21037 0.94168 0.97518 0.98431 1.20996 0.94039 0.97553 1.01781 0.91200 0.91525 0.91492 0.85949 0.85796 0.92337 0.92319 0.91579 0.90226 0.91175 0.92268 0.91622 0.91379 0.89391 0.76563 0.92175 0.92009 0.90952 0.85908 0.86015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.76 10.01 36.01 0.36 -0.40 16 2 C -0.08 -0.80 5.88 -104.62 -0.62 -1.41 16 3 C -0.12 -1.26 9.70 -39.58 -0.38 -1.64 16 4 C -0.09 -1.03 9.70 -39.58 -0.38 -1.42 16 5 C -0.09 -1.08 5.51 -104.62 -0.58 -1.65 16 6 C 0.10 1.15 5.87 36.01 0.21 1.36 16 7 O -0.35 -5.45 9.51 -55.09 -0.52 -5.98 16 8 C 0.08 1.12 2.48 -27.89 -0.07 1.05 16 9 H 0.08 1.02 7.26 -51.93 -0.38 0.65 16 10 C -0.17 -2.12 9.39 37.16 0.35 -1.78 16 11 C 0.52 10.21 7.24 -10.99 -0.08 10.13 16 12 O -0.53 -12.56 16.83 -14.30 -0.24 -12.80 16 13 N -0.61 -11.93 3.33 -170.53 -0.57 -12.49 16 14 C 0.09 1.59 5.33 -2.53 -0.01 1.58 16 15 C -0.14 -2.83 5.56 -24.58 -0.14 -2.97 16 16 C 0.25 5.87 0.85 -89.94 -0.08 5.79 16 17 O -0.59 -14.45 13.06 -35.23 -0.46 -14.91 16 18 C -0.53 -13.78 8.22 -34.44 -0.28 -14.06 16 19 H 0.06 1.68 7.56 -52.49 -0.40 1.29 16 20 C 0.07 1.83 5.29 -17.82 -0.09 1.74 16 21 N -0.90 -22.56 10.69 55.43 0.59 -21.97 16 22 Si 0.90 20.07 29.54 -169.99 -5.02 15.05 16 23 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 24 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 25 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 26 C 0.12 2.80 6.22 -3.07 -0.02 2.78 16 27 C -0.09 -0.99 9.70 -39.58 -0.38 -1.37 16 28 C -0.13 -1.21 9.70 -39.58 -0.38 -1.59 16 29 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.07 0.39 8.09 -51.93 -0.42 -0.03 16 31 H 0.07 0.41 8.09 -51.93 -0.42 -0.01 16 32 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16 33 H 0.12 1.30 8.06 -52.49 -0.42 0.88 16 34 H 0.06 0.60 8.03 -51.93 -0.42 0.18 16 35 H 0.06 0.54 7.81 -51.93 -0.41 0.14 16 36 H 0.07 0.63 7.87 -51.92 -0.41 0.22 16 37 H 0.08 0.95 5.56 -51.93 -0.29 0.66 16 38 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 39 H 0.06 0.83 7.33 -51.93 -0.38 0.45 16 40 H 0.07 1.08 7.16 -51.93 -0.37 0.71 16 41 H 0.07 1.45 8.04 -51.93 -0.42 1.03 16 42 H 0.09 1.88 7.64 -51.92 -0.40 1.48 16 43 H 0.38 9.45 7.28 45.56 0.33 9.78 16 44 H 0.27 6.48 8.31 -40.82 -0.34 6.14 16 45 H 0.06 1.46 8.07 -51.93 -0.42 1.04 16 46 H 0.07 1.67 7.66 -51.93 -0.40 1.27 16 47 H 0.12 1.10 8.06 -52.49 -0.42 0.67 16 48 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 LS Contribution 391.20 15.07 5.90 5.90 Total: -1.00 -30.57 391.20 -9.76 -40.33 By element: Atomic # 1 Polarization: 17.60 SS G_CDS: -6.86 Total: 10.74 kcal Atomic # 6 Polarization: -1.29 SS G_CDS: -2.58 Total: -3.86 kcal Atomic # 7 Polarization: -34.49 SS G_CDS: 0.03 Total: -34.46 kcal Atomic # 8 Polarization: -32.46 SS G_CDS: -1.22 Total: -33.68 kcal Atomic # 14 Polarization: 20.07 SS G_CDS: -5.02 Total: 15.05 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -30.57 -9.76 -40.33 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600063241.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.718 kcal (2) G-P(sol) polarization free energy of solvation -30.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.329 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds