Wall clock time and date at job start Tue Mar 31 2020 17:31:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38234 * 119.99708 * 2 1 4 4 C 1.38242 * 119.99508 * 180.02562 * 3 2 1 5 5 C 1.38232 * 120.00018 * 359.97438 * 4 3 2 6 6 C 1.50704 * 119.99563 * 179.97438 * 5 4 3 7 7 O 1.42902 * 109.47171 * 90.00188 * 6 5 4 8 8 C 1.42898 * 113.99900 * 179.97438 * 7 6 5 9 9 H 1.08996 * 109.47058 * 29.99592 * 8 7 6 10 10 C 1.52995 * 109.47076 * 269.99890 * 8 7 6 11 11 C 1.50694 * 109.47022 * 149.99808 * 8 7 6 12 12 O 1.21279 * 120.00448 * 4.99678 * 11 8 7 13 13 N 1.34776 * 120.00086 * 185.00120 * 11 8 7 14 14 C 1.47427 * 125.64653 * 359.97172 * 13 11 8 15 15 C 1.54909 * 104.83126 * 155.92067 * 14 13 11 16 16 C 1.55155 * 101.58319 * 37.00899 * 15 14 13 17 17 O 1.42903 * 110.71521 * 82.86218 * 16 15 14 18 18 C 1.50694 * 110.72177 * 205.95503 * 16 15 14 19 19 H 1.07994 * 119.99866 * 116.15664 * 18 16 15 20 20 C 1.37880 * 120.00331 * 296.15939 * 18 16 15 21 21 N 1.31512 * 119.99598 * 0.02562 * 20 18 16 22 22 Si 1.86801 * 120.00162 * 179.97438 * 20 18 16 23 23 H 1.48498 * 109.47018 * 90.00096 * 22 20 18 24 24 H 1.48498 * 109.46939 * 209.99953 * 22 20 18 25 25 H 1.48502 * 109.46753 * 330.00017 * 22 20 18 26 26 C 1.47018 * 125.65438 * 180.02562 * 13 11 8 27 27 C 1.38232 * 120.00092 * 0.25201 * 5 4 3 28 28 C 1.38232 * 119.99818 * 180.02562 * 2 1 3 29 29 H 1.09000 * 109.47244 * 90.00139 * 1 2 3 30 30 H 1.08999 * 109.47250 * 210.00669 * 1 2 3 31 31 H 1.09003 * 109.47039 * 330.00310 * 1 2 3 32 32 H 1.08000 * 120.00666 * 359.97438 * 3 2 1 33 33 H 1.08001 * 119.99678 * 179.97438 * 4 3 2 34 34 H 1.08993 * 109.46984 * 329.99610 * 6 5 4 35 35 H 1.09006 * 109.46632 * 210.00270 * 6 5 4 36 36 H 1.09008 * 109.47586 * 59.99785 * 10 8 7 37 37 H 1.08997 * 109.47531 * 180.02562 * 10 8 7 38 38 H 1.09001 * 109.47535 * 300.00127 * 10 8 7 39 39 H 1.09000 * 110.36621 * 37.08053 * 14 13 11 40 40 H 1.09000 * 110.46011 * 274.80656 * 14 13 11 41 41 H 1.09002 * 111.00456 * 278.93003 * 15 14 13 42 42 H 1.09007 * 111.03839 * 155.10257 * 15 14 13 43 43 H 0.96700 * 114.00311 * 61.45661 * 17 16 15 44 44 H 0.97002 * 119.99961 * 180.02562 * 21 20 18 45 45 H 1.09002 * 109.88150 * 61.58744 * 26 13 11 46 46 H 1.09002 * 109.88190 * 300.43189 * 26 13 11 47 47 H 1.07996 * 119.99818 * 179.72380 * 27 5 4 48 48 H 1.07996 * 120.00265 * 0.02562 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1972 0.0000 4 6 3.5806 1.1971 -0.0005 5 6 4.2717 0.0000 -0.0005 6 6 5.7787 0.0000 -0.0017 7 8 6.2561 0.0006 1.3452 8 6 7.6807 0.0002 1.4569 9 1 8.1127 0.5133 0.5978 10 6 8.1886 -1.4425 1.4976 11 6 8.0856 0.7111 2.7224 12 8 7.2380 1.0930 3.5012 13 7 9.3897 0.9228 2.9887 14 6 10.5187 0.5132 2.1338 15 6 11.6722 1.4754 2.5123 16 6 11.4587 1.6315 4.0412 17 8 12.0534 0.5416 4.7486 18 6 12.0144 2.9458 4.5257 19 1 11.3531 3.6909 4.9424 20 6 13.3672 3.1970 4.4369 21 7 14.1725 2.2898 3.9289 22 14 14.0560 4.8264 5.0369 23 1 14.4239 4.7103 6.4709 24 1 15.2614 5.1765 4.2434 25 1 13.0302 5.8876 4.8734 26 6 9.9221 1.5994 4.1804 27 6 3.5805 -1.1971 -0.0053 28 6 2.1982 -1.1971 -0.0005 29 1 -0.3634 0.0000 -1.0277 30 1 -0.3634 -0.8899 0.5139 31 1 -0.3633 0.8900 0.5138 32 1 1.6582 2.1325 -0.0004 33 1 4.1205 2.1325 -0.0010 34 1 6.1416 0.8897 -0.5162 35 1 6.1416 -0.8902 -0.5155 36 1 7.8957 -1.9568 0.5822 37 1 9.2752 -1.4429 1.5833 38 1 7.7566 -1.9557 2.3568 39 1 10.2588 0.6280 1.0815 40 1 10.8009 -0.5185 2.3437 41 1 11.5652 2.4331 2.0030 42 1 12.6423 1.0271 2.2970 43 1 13.0106 0.4712 4.6300 44 1 15.1243 2.4663 3.8668 45 1 9.6426 1.0459 5.0769 46 1 9.5334 2.6164 4.2340 47 1 4.1205 -2.1324 -0.0098 48 1 1.6582 -2.1324 -0.0014 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000600063241.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:31:58 Heat of formation + Delta-G solvation = -126.351416 kcal Electronic energy + Delta-G solvation = -28391.847886 eV Core-core repulsion = 24410.766966 eV Total energy + Delta-G solvation = -3981.080921 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.35309 -40.42509 -39.34009 -38.29865 -36.17750 -34.40627 -34.18397 -32.70188 -31.84995 -31.11894 -29.97340 -29.22460 -27.22125 -25.78724 -24.94139 -23.66036 -23.42273 -21.76035 -21.63555 -20.45068 -19.20719 -18.42691 -17.84490 -17.21524 -16.95260 -16.83739 -16.68814 -16.42979 -16.06301 -15.93166 -15.70084 -15.00327 -14.80470 -14.61080 -14.41142 -14.30733 -14.12200 -13.89502 -13.67977 -13.42642 -13.31099 -13.25751 -13.20004 -13.02505 -12.85067 -12.79762 -12.59101 -12.44946 -12.37550 -12.25552 -11.98419 -11.87073 -11.82869 -11.29112 -11.03181 -10.66353 -10.50670 -10.14422 -9.84454 -9.67385 -9.52505 -8.25730 -6.38946 0.27542 0.48455 1.40741 1.44198 1.51558 1.52595 1.73933 2.38639 2.62418 2.99758 3.12192 3.43093 3.79016 3.84286 3.86018 3.92506 3.97977 4.02177 4.11014 4.12701 4.23652 4.25348 4.36437 4.40276 4.54658 4.58402 4.61766 4.62586 4.71846 4.78421 4.83631 4.84453 4.89604 4.94341 5.14739 5.16839 5.19669 5.20913 5.27001 5.45566 5.46548 5.53034 5.65553 5.67677 5.76157 6.03799 6.08207 6.10976 6.54103 6.64120 7.08881 7.31210 7.42922 8.80660 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.026127 B = 0.002127 C = 0.002048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1071.438140 B =13159.859598 C =13668.450046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.090 4.090 3 C -0.137 4.137 4 C -0.112 4.112 5 C -0.115 4.115 6 C 0.097 3.903 7 O -0.381 6.381 8 C 0.084 3.916 9 H 0.115 0.885 10 C -0.167 4.167 11 C 0.515 3.485 12 O -0.585 6.585 13 N -0.607 5.607 14 C 0.100 3.900 15 C -0.127 4.127 16 C 0.236 3.764 17 O -0.593 6.593 18 C -0.563 4.563 19 H 0.049 0.951 20 C 0.039 3.961 21 N -0.904 5.904 22 Si 0.957 3.043 23 H -0.279 1.279 24 H -0.275 1.275 25 H -0.276 1.276 26 C 0.129 3.871 27 C -0.103 4.103 28 C -0.133 4.133 29 H 0.083 0.917 30 H 0.075 0.925 31 H 0.071 0.929 32 H 0.137 0.863 33 H 0.122 0.878 34 H 0.068 0.932 35 H 0.086 0.914 36 H 0.101 0.899 37 H 0.086 0.914 38 H 0.051 0.949 39 H 0.104 0.896 40 H 0.080 0.920 41 H 0.059 0.941 42 H 0.082 0.918 43 H 0.381 0.619 44 H 0.273 0.727 45 H 0.040 0.960 46 H 0.056 0.944 47 H 0.138 0.862 48 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.108 -8.150 -15.478 24.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.090 4.090 3 C -0.154 4.154 4 C -0.130 4.130 5 C -0.115 4.115 6 C 0.021 3.979 7 O -0.300 6.300 8 C 0.023 3.977 9 H 0.133 0.867 10 C -0.224 4.224 11 C 0.304 3.696 12 O -0.465 6.465 13 N -0.340 5.340 14 C -0.021 4.021 15 C -0.166 4.166 16 C 0.196 3.804 17 O -0.402 6.402 18 C -0.601 4.601 19 H 0.067 0.933 20 C -0.163 4.163 21 N -0.543 5.543 22 Si 0.783 3.217 23 H -0.205 1.205 24 H -0.200 1.200 25 H -0.201 1.201 26 C 0.006 3.994 27 C -0.121 4.121 28 C -0.151 4.151 29 H 0.101 0.899 30 H 0.094 0.906 31 H 0.090 0.910 32 H 0.154 0.846 33 H 0.140 0.860 34 H 0.086 0.914 35 H 0.104 0.896 36 H 0.120 0.880 37 H 0.105 0.895 38 H 0.070 0.930 39 H 0.122 0.878 40 H 0.098 0.902 41 H 0.078 0.922 42 H 0.101 0.899 43 H 0.232 0.768 44 H 0.082 0.918 45 H 0.059 0.941 46 H 0.075 0.925 47 H 0.155 0.845 48 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -18.197 -8.107 -14.807 24.821 hybrid contribution 1.400 1.287 0.570 1.985 sum -16.797 -6.820 -14.237 23.051 Atomic orbital electron populations 1.20851 0.89238 1.03598 1.03277 1.20359 0.97688 0.93028 0.97970 1.21291 0.93858 0.98772 1.01518 1.21279 0.95040 0.97890 0.98760 1.19754 0.94521 0.94152 1.03079 1.21626 0.90632 1.02629 0.82997 1.88102 1.19095 1.95182 1.27656 1.21861 0.83167 0.97937 0.94701 0.86739 1.22283 1.02752 0.93052 1.04329 1.20940 0.80472 0.79351 0.88801 1.90654 1.50864 1.53511 1.51439 1.48617 1.05425 1.56852 1.23148 1.22691 0.85292 0.99142 0.94954 1.23116 0.97627 0.98236 0.97637 1.19569 0.86462 0.85164 0.89181 1.86113 1.27182 1.52289 1.74637 1.21710 0.93759 1.01449 1.43201 0.93304 1.25543 0.96808 1.00069 0.93833 1.69680 1.04831 1.35273 1.44482 0.85572 0.77866 0.79931 0.78313 1.20516 1.19993 1.20091 1.21793 0.94716 0.95640 0.87253 1.21305 0.94833 0.97760 0.98202 1.21340 0.94009 0.98607 1.01152 0.89882 0.90579 0.91018 0.84554 0.85965 0.91394 0.89607 0.88032 0.89546 0.92966 0.87764 0.90162 0.92215 0.89908 0.76800 0.91785 0.94115 0.92533 0.84462 0.83848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.28 10.01 71.24 0.71 -0.57 16 2 C -0.09 -1.59 5.88 -19.87 -0.12 -1.71 16 3 C -0.14 -2.68 9.70 22.27 0.22 -2.46 16 4 C -0.11 -2.52 9.70 22.27 0.22 -2.30 16 5 C -0.11 -2.59 5.51 -19.87 -0.11 -2.70 16 6 C 0.10 2.03 5.87 71.24 0.42 2.45 16 7 O -0.38 -11.38 9.51 -129.99 -1.24 -12.61 16 8 C 0.08 2.28 2.48 29.84 0.07 2.36 16 9 H 0.12 2.37 7.26 -2.39 -0.02 2.35 16 10 C -0.17 -3.55 9.39 71.98 0.68 -2.87 16 11 C 0.51 19.94 7.24 87.66 0.63 20.57 16 12 O -0.58 -28.39 16.83 15.96 0.27 -28.12 16 13 N -0.61 -23.58 3.33 -811.82 -2.70 -26.28 16 14 C 0.10 3.22 5.33 86.85 0.46 3.68 16 15 C -0.13 -5.17 5.56 31.99 0.18 -4.99 16 16 C 0.24 11.36 0.85 -10.36 -0.01 11.35 16 17 O -0.59 -29.65 13.06 -148.98 -1.95 -31.60 16 18 C -0.56 -29.73 8.22 25.60 0.21 -29.52 16 19 H 0.05 2.65 7.56 -2.91 -0.02 2.63 16 20 C 0.04 1.98 5.29 84.66 0.45 2.43 16 21 N -0.90 -45.04 10.69 21.45 0.23 -44.81 16 22 Si 0.96 41.14 29.54 68.60 2.03 43.17 16 23 H -0.28 -12.02 7.11 99.48 0.71 -11.31 16 24 H -0.27 -11.31 7.11 99.48 0.71 -10.61 16 25 H -0.28 -11.93 7.11 99.48 0.71 -11.22 16 26 C 0.13 6.02 6.22 86.73 0.54 6.56 16 27 C -0.10 -2.03 9.70 22.27 0.22 -1.81 16 28 C -0.13 -2.34 9.70 22.27 0.22 -2.12 16 29 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 30 H 0.08 0.72 8.09 -2.39 -0.02 0.70 16 31 H 0.07 0.75 8.09 -2.39 -0.02 0.73 16 32 H 0.14 2.13 8.06 -2.91 -0.02 2.10 16 33 H 0.12 2.63 8.06 -2.91 -0.02 2.61 16 34 H 0.07 1.26 8.03 -2.39 -0.02 1.24 16 35 H 0.09 1.29 7.81 -2.38 -0.02 1.27 16 36 H 0.10 1.47 7.87 -2.38 -0.02 1.45 16 37 H 0.09 1.72 5.56 -2.39 -0.01 1.71 16 38 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 39 H 0.10 2.45 7.33 -2.39 -0.02 2.44 16 40 H 0.08 2.39 7.16 -2.39 -0.02 2.37 16 41 H 0.06 2.49 8.04 -2.39 -0.02 2.48 16 42 H 0.08 3.44 7.64 -2.38 -0.02 3.43 16 43 H 0.38 18.96 7.28 -74.06 -0.54 18.42 16 44 H 0.27 12.91 8.31 -92.71 -0.77 12.14 16 45 H 0.04 2.02 8.07 -2.39 -0.02 2.00 16 46 H 0.06 2.76 7.66 -2.39 -0.02 2.75 16 47 H 0.14 2.16 8.06 -2.91 -0.02 2.14 16 48 H 0.14 1.78 8.06 -2.91 -0.02 1.75 16 Total: -1.00 -68.42 391.20 2.05 -66.37 By element: Atomic # 1 Polarization: 35.14 SS G_CDS: 0.42 Total: 35.56 kcal Atomic # 6 Polarization: -6.65 SS G_CDS: 4.98 Total: -1.67 kcal Atomic # 7 Polarization: -68.63 SS G_CDS: -2.47 Total: -71.10 kcal Atomic # 8 Polarization: -69.42 SS G_CDS: -2.91 Total: -72.33 kcal Atomic # 14 Polarization: 41.14 SS G_CDS: 2.03 Total: 43.17 kcal Total: -68.42 2.05 -66.37 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600063241.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.980 kcal (2) G-P(sol) polarization free energy of solvation -68.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.371 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds