Wall clock time and date at job start Tue Mar 31 2020 17:32:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38235 * 120.00002 * 2 1 4 4 C 1.38230 * 120.00446 * 179.97438 * 3 2 1 5 5 C 1.38239 * 119.99613 * 359.97438 * 4 3 2 6 6 C 1.50705 * 119.99909 * 180.02562 * 5 4 3 7 7 O 1.42894 * 109.47239 * 89.99856 * 6 5 4 8 8 C 1.42897 * 114.00361 * 179.97438 * 7 6 5 9 9 H 1.09008 * 109.46639 * 30.00011 * 8 7 6 10 10 C 1.52997 * 109.47233 * 270.00478 * 8 7 6 11 11 C 1.50692 * 109.47411 * 149.99725 * 8 7 6 12 12 O 1.21287 * 119.99987 * 12.36711 * 11 8 7 13 13 N 1.34785 * 120.00327 * 192.36414 * 11 8 7 14 14 C 1.47287 * 125.78984 * 355.07733 * 13 11 8 15 15 C 1.54321 * 107.30393 * 178.92385 * 14 13 11 16 16 C 1.55152 * 102.94280 * 337.81734 * 15 14 13 17 17 O 1.42898 * 111.00483 * 277.42720 * 16 15 14 18 18 C 1.50703 * 111.03738 * 153.59118 * 16 15 14 19 19 H 1.07999 * 119.99922 * 247.78178 * 18 16 15 20 20 C 1.37881 * 119.99892 * 67.78268 * 18 16 15 21 21 N 1.31517 * 120.00224 * 0.02562 * 20 18 16 22 22 Si 1.86798 * 119.99838 * 179.97438 * 20 18 16 23 23 H 1.48508 * 109.47120 * 90.00266 * 22 20 18 24 24 H 1.48499 * 109.47317 * 209.99811 * 22 20 18 25 25 H 1.48496 * 109.47431 * 330.00165 * 22 20 18 26 26 C 1.47420 * 125.64926 * 175.07428 * 13 11 8 27 27 C 1.38236 * 120.00273 * 0.27248 * 5 4 3 28 28 C 1.38232 * 120.00003 * 180.02562 * 2 1 3 29 29 H 1.08994 * 109.47045 * 90.00055 * 1 2 3 30 30 H 1.09001 * 109.46695 * 209.99946 * 1 2 3 31 31 H 1.08997 * 109.46900 * 329.99438 * 1 2 3 32 32 H 1.08006 * 120.00037 * 0.02562 * 3 2 1 33 33 H 1.07999 * 120.00701 * 179.97438 * 4 3 2 34 34 H 1.09004 * 109.46970 * 329.99675 * 6 5 4 35 35 H 1.09004 * 109.47174 * 209.99720 * 6 5 4 36 36 H 1.08998 * 109.47550 * 64.75296 * 10 8 7 37 37 H 1.09008 * 109.47225 * 184.75564 * 10 8 7 38 38 H 1.08998 * 109.46988 * 304.75087 * 10 8 7 39 39 H 1.08997 * 109.85767 * 59.49817 * 14 13 11 40 40 H 1.08999 * 109.99999 * 298.42624 * 14 13 11 41 41 H 1.09002 * 110.72203 * 219.44783 * 15 14 13 42 42 H 1.09004 * 110.72007 * 96.17981 * 15 14 13 43 43 H 0.96707 * 114.00228 * 292.19681 * 17 16 15 44 44 H 0.96995 * 120.00183 * 179.97438 * 21 20 18 45 45 H 1.09008 * 110.36417 * 85.26468 * 26 13 11 46 46 H 1.08997 * 110.36809 * 323.05064 * 26 13 11 47 47 H 1.08002 * 120.00141 * 179.73020 * 27 5 4 48 48 H 1.08000 * 120.00143 * 359.97438 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1972 0.0000 4 6 3.5805 1.1973 0.0005 5 6 4.2717 0.0001 0.0016 6 6 5.7788 0.0001 0.0028 7 8 6.2541 0.0008 1.3503 8 6 7.6785 0.0003 1.4643 9 1 8.1118 0.5135 0.6058 10 6 8.1863 -1.4424 1.5058 11 6 8.0814 0.7113 2.7304 12 8 7.2467 0.9743 3.5701 13 7 9.3693 1.0551 2.9297 14 6 10.4988 0.7111 2.0492 15 6 11.7677 1.3384 2.6639 16 6 11.1978 2.4761 3.5516 17 8 10.9304 3.6460 2.7758 18 6 12.1300 2.7900 4.6933 19 1 11.8360 2.5655 5.7080 20 6 13.3584 3.3639 4.4425 21 7 13.7163 3.6377 3.2069 22 14 14.5137 3.7536 5.8577 23 1 15.3910 2.5838 6.1171 24 1 15.3487 4.9300 5.5055 25 1 13.7199 4.0568 7.0755 26 6 9.8831 1.8394 4.0673 27 6 3.5806 -1.1971 -0.0036 28 6 2.1982 -1.1971 -0.0005 29 1 -0.3633 0.0000 -1.0276 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3633 0.8899 0.5139 32 1 1.6582 2.1325 0.0004 33 1 4.1205 2.1325 0.0001 34 1 6.1425 0.8899 -0.5112 35 1 6.1425 -0.8901 -0.5104 36 1 7.9691 -1.9315 0.5563 37 1 9.2628 -1.4439 1.6774 38 1 7.6889 -1.9795 2.3134 39 1 10.3290 1.1189 1.0527 40 1 10.6108 -0.3717 1.9922 41 1 12.4137 1.7436 1.8851 42 1 12.3041 0.6082 3.2700 43 1 11.7233 4.0793 2.4314 44 1 14.5803 4.0418 3.0305 45 1 10.0853 1.1873 4.9171 46 1 9.1699 2.6149 4.3463 47 1 4.1207 -2.1324 -0.0071 48 1 1.6582 -2.1324 -0.0005 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000600063242.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:32:03 Heat of formation + Delta-G solvation = -107.871663 kcal Electronic energy + Delta-G solvation = -28422.762520 eV Core-core repulsion = 24442.482942 eV Total energy + Delta-G solvation = -3980.279578 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -39.93463 -39.49043 -37.92033 -36.81341 -34.37113 -33.59353 -32.17464 -31.51067 -31.08997 -29.64686 -28.55842 -28.17992 -25.52709 -24.79814 -23.68433 -22.88625 -21.94221 -20.98589 -19.82149 -18.98222 -17.37974 -17.14298 -16.58635 -16.13791 -15.97262 -15.32322 -15.22293 -15.01843 -14.82935 -14.54065 -14.27472 -13.98700 -13.68933 -13.56741 -13.40629 -13.08404 -12.85795 -12.68551 -12.52101 -12.30649 -12.08895 -11.97514 -11.87456 -11.76441 -11.40102 -11.35445 -11.31782 -11.12811 -11.01992 -10.88840 -10.59322 -10.51139 -10.07658 -9.87560 -9.46965 -9.14602 -9.06256 -8.75809 -8.70623 -8.25130 -8.00342 -6.33563 -4.41043 1.07000 1.26556 2.99877 3.10208 3.17272 3.25299 3.29942 3.59646 4.12432 4.24058 4.58905 4.60280 4.71817 4.84475 4.85356 4.90019 4.94225 4.99518 5.11617 5.17312 5.28246 5.31609 5.35581 5.45525 5.51175 5.54723 5.55613 5.62313 5.77249 5.82663 5.89667 5.90859 5.92589 6.11936 6.23276 6.24953 6.40797 6.40822 6.45994 6.62817 6.82876 6.83857 6.89006 7.11256 7.25554 7.28564 7.70152 7.95452 8.09821 8.60270 8.65675 9.27959 9.44119 10.74207 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.029163 B = 0.002107 C = 0.002062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 959.906202 B =13284.226168 C =13578.079684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.084 4.084 3 C -0.124 4.124 4 C -0.091 4.091 5 C -0.092 4.092 6 C 0.099 3.901 7 O -0.350 6.350 8 C 0.075 3.925 9 H 0.083 0.917 10 C -0.172 4.172 11 C 0.526 3.474 12 O -0.533 6.533 13 N -0.606 5.606 14 C 0.096 3.904 15 C -0.139 4.139 16 C 0.249 3.751 17 O -0.584 6.584 18 C -0.534 4.534 19 H 0.066 0.934 20 C 0.072 3.928 21 N -0.898 5.898 22 Si 0.905 3.095 23 H -0.279 1.279 24 H -0.284 1.284 25 H -0.272 1.272 26 C 0.122 3.878 27 C -0.094 4.094 28 C -0.126 4.126 29 H 0.069 0.931 30 H 0.066 0.934 31 H 0.066 0.934 32 H 0.123 0.877 33 H 0.124 0.876 34 H 0.059 0.941 35 H 0.058 0.942 36 H 0.065 0.935 37 H 0.077 0.923 38 H 0.070 0.930 39 H 0.057 0.943 40 H 0.057 0.943 41 H 0.083 0.917 42 H 0.069 0.931 43 H 0.386 0.614 44 H 0.269 0.731 45 H 0.071 0.929 46 H 0.070 0.930 47 H 0.123 0.877 48 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.642 -9.849 -11.231 21.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.084 4.084 3 C -0.142 4.142 4 C -0.109 4.109 5 C -0.092 4.092 6 C 0.023 3.977 7 O -0.268 6.268 8 C 0.014 3.986 9 H 0.101 0.899 10 C -0.230 4.230 11 C 0.312 3.688 12 O -0.410 6.410 13 N -0.341 5.341 14 C -0.026 4.026 15 C -0.178 4.178 16 C 0.208 3.792 17 O -0.395 6.395 18 C -0.573 4.573 19 H 0.084 0.916 20 C -0.130 4.130 21 N -0.538 5.538 22 Si 0.732 3.268 23 H -0.205 1.205 24 H -0.210 1.210 25 H -0.196 1.196 26 C 0.000 4.000 27 C -0.112 4.112 28 C -0.144 4.144 29 H 0.088 0.912 30 H 0.085 0.915 31 H 0.085 0.915 32 H 0.141 0.859 33 H 0.142 0.858 34 H 0.077 0.923 35 H 0.077 0.923 36 H 0.084 0.916 37 H 0.096 0.904 38 H 0.089 0.911 39 H 0.076 0.924 40 H 0.075 0.925 41 H 0.102 0.898 42 H 0.088 0.912 43 H 0.238 0.762 44 H 0.079 0.921 45 H 0.089 0.911 46 H 0.089 0.911 47 H 0.141 0.859 48 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -16.773 -9.806 -10.597 22.131 hybrid contribution 1.628 0.313 0.245 1.676 sum -15.145 -9.493 -10.351 20.655 Atomic orbital electron populations 1.20798 0.91237 1.02855 1.02224 1.19966 0.96084 0.93288 0.99080 1.21025 0.94051 0.97625 1.01498 1.21101 0.94216 0.97758 0.97814 1.19554 0.94068 0.93617 1.01929 1.21410 0.90743 1.00922 0.84630 1.88129 1.18841 1.94963 1.24900 1.21857 0.82876 0.96779 0.97095 0.89934 1.22281 1.02486 0.95032 1.03205 1.19822 0.81303 0.79733 0.87914 1.90683 1.49835 1.54981 1.45484 1.48588 1.05684 1.53505 1.26313 1.22324 0.87977 0.98482 0.93867 1.23209 0.94175 0.99655 1.00758 1.19585 0.88476 0.82532 0.88583 1.86102 1.38310 1.43002 1.72062 1.21483 1.00545 1.41702 0.93549 0.91582 1.24995 0.97660 0.94206 0.96184 1.69556 1.22482 1.43104 1.18670 0.86385 0.80297 0.77997 0.82131 1.20452 1.21003 1.19643 1.22389 0.96422 0.93602 0.87567 1.21034 0.94158 0.97496 0.98482 1.20993 0.94033 0.97537 1.01831 0.91206 0.91544 0.91488 0.85938 0.85758 0.92281 0.92345 0.91564 0.90395 0.91100 0.92430 0.92497 0.89798 0.91248 0.76227 0.92054 0.91053 0.91128 0.85931 0.86035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.78 10.01 36.01 0.36 -0.42 16 2 C -0.08 -0.81 5.88 -104.62 -0.62 -1.43 16 3 C -0.12 -1.29 9.70 -39.59 -0.38 -1.67 16 4 C -0.09 -1.06 9.70 -39.58 -0.38 -1.45 16 5 C -0.09 -1.10 5.51 -104.62 -0.58 -1.68 16 6 C 0.10 1.18 5.87 36.01 0.21 1.39 16 7 O -0.35 -5.58 9.53 -54.83 -0.52 -6.10 16 8 C 0.08 1.13 2.54 -27.89 -0.07 1.06 16 9 H 0.08 1.09 7.51 -51.92 -0.39 0.70 16 10 C -0.17 -2.08 9.44 37.16 0.35 -1.73 16 11 C 0.53 10.42 7.17 -10.99 -0.08 10.34 16 12 O -0.53 -12.70 16.84 -14.05 -0.24 -12.94 16 13 N -0.61 -12.04 3.34 -170.31 -0.57 -12.60 16 14 C 0.10 1.66 6.07 -2.92 -0.02 1.65 16 15 C -0.14 -2.88 5.64 -24.90 -0.14 -3.02 16 16 C 0.25 5.92 0.89 -89.63 -0.08 5.84 16 17 O -0.58 -14.82 13.18 -35.23 -0.46 -15.29 16 18 C -0.53 -13.69 8.25 -34.44 -0.28 -13.97 16 19 H 0.07 1.69 7.77 -52.49 -0.41 1.28 16 20 C 0.07 1.81 5.30 -17.82 -0.09 1.71 16 21 N -0.90 -22.66 10.79 55.43 0.60 -22.07 16 22 Si 0.90 19.91 29.54 -169.99 -5.02 14.89 16 23 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 24 H -0.28 -6.25 7.11 56.52 0.40 -5.84 16 25 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 26 C 0.12 2.73 6.06 -2.53 -0.02 2.72 16 27 C -0.09 -1.01 9.70 -39.58 -0.38 -1.39 16 28 C -0.13 -1.23 9.70 -39.58 -0.38 -1.61 16 29 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.07 0.40 8.09 -51.93 -0.42 -0.02 16 31 H 0.07 0.42 8.09 -51.93 -0.42 0.00 16 32 H 0.12 1.03 8.06 -52.48 -0.42 0.61 16 33 H 0.12 1.37 8.06 -52.49 -0.42 0.94 16 34 H 0.06 0.64 8.03 -51.93 -0.42 0.23 16 35 H 0.06 0.56 7.92 -51.93 -0.41 0.15 16 36 H 0.07 0.62 7.98 -51.93 -0.41 0.21 16 37 H 0.08 0.90 5.52 -51.92 -0.29 0.61 16 38 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 39 H 0.06 0.93 7.96 -51.93 -0.41 0.51 16 40 H 0.06 0.82 6.05 -51.93 -0.31 0.51 16 41 H 0.08 1.81 7.85 -51.93 -0.41 1.40 16 42 H 0.07 1.43 8.03 -51.93 -0.42 1.01 16 43 H 0.39 9.83 6.93 45.56 0.32 10.15 16 44 H 0.27 6.52 8.31 -40.82 -0.34 6.18 16 45 H 0.07 1.55 8.02 -51.92 -0.42 1.14 16 46 H 0.07 1.70 8.08 -51.93 -0.42 1.28 16 47 H 0.12 1.11 8.06 -52.49 -0.42 0.69 16 48 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16 LS Contribution 392.62 15.07 5.92 5.92 Total: -1.00 -30.67 392.62 -9.80 -40.47 By element: Atomic # 1 Polarization: 18.29 SS G_CDS: -6.91 Total: 11.38 kcal Atomic # 6 Polarization: -1.07 SS G_CDS: -2.59 Total: -3.65 kcal Atomic # 7 Polarization: -34.70 SS G_CDS: 0.03 Total: -34.67 kcal Atomic # 8 Polarization: -33.10 SS G_CDS: -1.22 Total: -34.33 kcal Atomic # 14 Polarization: 19.91 SS G_CDS: -5.02 Total: 14.89 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -30.67 -9.80 -40.47 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600063242.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.402 kcal (2) G-P(sol) polarization free energy of solvation -30.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.469 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds