Wall clock time and date at job start Tue Mar 31 2020 17:32:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38235 * 120.00002 * 2 1 4 4 C 1.38230 * 120.00446 * 179.97438 * 3 2 1 5 5 C 1.38239 * 119.99613 * 359.97438 * 4 3 2 6 6 C 1.50705 * 119.99909 * 180.02562 * 5 4 3 7 7 O 1.42894 * 109.47239 * 89.99856 * 6 5 4 8 8 C 1.42897 * 114.00361 * 179.97438 * 7 6 5 9 9 H 1.09008 * 109.46639 * 30.00011 * 8 7 6 10 10 C 1.52997 * 109.47233 * 270.00478 * 8 7 6 11 11 C 1.50692 * 109.47411 * 149.99725 * 8 7 6 12 12 O 1.21287 * 119.99987 * 12.36711 * 11 8 7 13 13 N 1.34785 * 120.00327 * 192.36414 * 11 8 7 14 14 C 1.47287 * 125.78984 * 355.07733 * 13 11 8 15 15 C 1.54321 * 107.30393 * 178.92385 * 14 13 11 16 16 C 1.55152 * 102.94280 * 337.81734 * 15 14 13 17 17 O 1.42898 * 111.00483 * 277.42720 * 16 15 14 18 18 C 1.50703 * 111.03738 * 153.59118 * 16 15 14 19 19 H 1.07999 * 119.99922 * 247.78178 * 18 16 15 20 20 C 1.37881 * 119.99892 * 67.78268 * 18 16 15 21 21 N 1.31517 * 120.00224 * 0.02562 * 20 18 16 22 22 Si 1.86798 * 119.99838 * 179.97438 * 20 18 16 23 23 H 1.48508 * 109.47120 * 90.00266 * 22 20 18 24 24 H 1.48499 * 109.47317 * 209.99811 * 22 20 18 25 25 H 1.48496 * 109.47431 * 330.00165 * 22 20 18 26 26 C 1.47420 * 125.64926 * 175.07428 * 13 11 8 27 27 C 1.38236 * 120.00273 * 0.27248 * 5 4 3 28 28 C 1.38232 * 120.00003 * 180.02562 * 2 1 3 29 29 H 1.08994 * 109.47045 * 90.00055 * 1 2 3 30 30 H 1.09001 * 109.46695 * 209.99946 * 1 2 3 31 31 H 1.08997 * 109.46900 * 329.99438 * 1 2 3 32 32 H 1.08006 * 120.00037 * 0.02562 * 3 2 1 33 33 H 1.07999 * 120.00701 * 179.97438 * 4 3 2 34 34 H 1.09004 * 109.46970 * 329.99675 * 6 5 4 35 35 H 1.09004 * 109.47174 * 209.99720 * 6 5 4 36 36 H 1.08998 * 109.47550 * 64.75296 * 10 8 7 37 37 H 1.09008 * 109.47225 * 184.75564 * 10 8 7 38 38 H 1.08998 * 109.46988 * 304.75087 * 10 8 7 39 39 H 1.08997 * 109.85767 * 59.49817 * 14 13 11 40 40 H 1.08999 * 109.99999 * 298.42624 * 14 13 11 41 41 H 1.09002 * 110.72203 * 219.44783 * 15 14 13 42 42 H 1.09004 * 110.72007 * 96.17981 * 15 14 13 43 43 H 0.96707 * 114.00228 * 292.19681 * 17 16 15 44 44 H 0.96995 * 120.00183 * 179.97438 * 21 20 18 45 45 H 1.09008 * 110.36417 * 85.26468 * 26 13 11 46 46 H 1.08997 * 110.36809 * 323.05064 * 26 13 11 47 47 H 1.08002 * 120.00141 * 179.73020 * 27 5 4 48 48 H 1.08000 * 120.00143 * 359.97438 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1972 0.0000 4 6 3.5805 1.1973 0.0005 5 6 4.2717 0.0001 0.0016 6 6 5.7788 0.0001 0.0028 7 8 6.2541 0.0008 1.3503 8 6 7.6785 0.0003 1.4643 9 1 8.1118 0.5135 0.6058 10 6 8.1863 -1.4424 1.5058 11 6 8.0814 0.7113 2.7304 12 8 7.2467 0.9743 3.5701 13 7 9.3693 1.0551 2.9297 14 6 10.4988 0.7111 2.0492 15 6 11.7677 1.3384 2.6639 16 6 11.1978 2.4761 3.5516 17 8 10.9304 3.6460 2.7758 18 6 12.1300 2.7900 4.6933 19 1 11.8360 2.5655 5.7080 20 6 13.3584 3.3639 4.4425 21 7 13.7163 3.6377 3.2069 22 14 14.5137 3.7536 5.8577 23 1 15.3910 2.5838 6.1171 24 1 15.3487 4.9300 5.5055 25 1 13.7199 4.0568 7.0755 26 6 9.8831 1.8394 4.0673 27 6 3.5806 -1.1971 -0.0036 28 6 2.1982 -1.1971 -0.0005 29 1 -0.3633 0.0000 -1.0276 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3633 0.8899 0.5139 32 1 1.6582 2.1325 0.0004 33 1 4.1205 2.1325 0.0001 34 1 6.1425 0.8899 -0.5112 35 1 6.1425 -0.8901 -0.5104 36 1 7.9691 -1.9315 0.5563 37 1 9.2628 -1.4439 1.6774 38 1 7.6889 -1.9795 2.3134 39 1 10.3290 1.1189 1.0527 40 1 10.6108 -0.3717 1.9922 41 1 12.4137 1.7436 1.8851 42 1 12.3041 0.6082 3.2700 43 1 11.7233 4.0793 2.4314 44 1 14.5803 4.0418 3.0305 45 1 10.0853 1.1873 4.9171 46 1 9.1699 2.6149 4.3463 47 1 4.1207 -2.1324 -0.0071 48 1 1.6582 -2.1324 -0.0005 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000600063242.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:32:02 Heat of formation + Delta-G solvation = -126.186286 kcal Electronic energy + Delta-G solvation = -28423.556702 eV Core-core repulsion = 24442.482942 eV Total energy + Delta-G solvation = -3981.073760 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.31826 -40.42617 -39.31862 -38.28659 -36.15847 -34.40881 -34.14109 -32.70065 -31.85529 -31.21842 -29.94564 -29.23399 -27.22537 -25.78442 -24.93844 -23.66267 -23.38133 -21.76259 -21.59907 -20.48888 -19.15929 -18.53868 -17.82725 -17.16432 -16.97857 -16.92661 -16.61735 -16.24225 -16.11685 -15.87567 -15.67194 -15.23462 -14.75789 -14.62973 -14.38353 -14.32630 -14.09687 -13.92468 -13.63764 -13.59200 -13.32310 -13.19697 -13.13586 -13.00869 -12.87413 -12.80069 -12.59174 -12.52915 -12.33010 -12.25700 -11.88988 -11.87569 -11.78975 -11.32133 -11.04942 -10.68206 -10.50425 -10.15251 -9.84985 -9.61360 -9.52964 -8.25940 -6.39978 0.26964 0.47948 1.41810 1.45374 1.51010 1.54621 1.76996 2.38976 2.62485 2.98707 3.12473 3.43556 3.77763 3.83574 3.84155 3.93373 3.98377 4.03873 4.10424 4.12248 4.23029 4.27938 4.33781 4.36626 4.56901 4.57722 4.59315 4.61852 4.76044 4.79740 4.83774 4.84136 4.86639 4.93965 5.14526 5.16430 5.21747 5.23387 5.26866 5.44270 5.46042 5.53034 5.65078 5.67239 5.76948 6.02511 6.06014 6.10182 6.56464 6.63601 7.09926 7.31149 7.45295 8.80476 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.029163 B = 0.002107 C = 0.002062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 959.906202 B =13284.226168 C =13578.079684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.090 4.090 3 C -0.136 4.136 4 C -0.113 4.113 5 C -0.115 4.115 6 C 0.097 3.903 7 O -0.381 6.381 8 C 0.083 3.917 9 H 0.106 0.894 10 C -0.165 4.165 11 C 0.516 3.484 12 O -0.585 6.585 13 N -0.607 5.607 14 C 0.101 3.899 15 C -0.130 4.130 16 C 0.235 3.765 17 O -0.596 6.596 18 C -0.561 4.561 19 H 0.055 0.945 20 C 0.037 3.963 21 N -0.908 5.908 22 Si 0.961 3.039 23 H -0.271 1.271 24 H -0.280 1.280 25 H -0.278 1.278 26 C 0.125 3.875 27 C -0.102 4.102 28 C -0.132 4.132 29 H 0.083 0.917 30 H 0.076 0.924 31 H 0.071 0.929 32 H 0.136 0.864 33 H 0.120 0.880 34 H 0.064 0.936 35 H 0.087 0.913 36 H 0.101 0.899 37 H 0.086 0.914 38 H 0.057 0.943 39 H 0.077 0.923 40 H 0.097 0.903 41 H 0.075 0.925 42 H 0.067 0.933 43 H 0.382 0.618 44 H 0.273 0.727 45 H 0.072 0.928 46 H 0.041 0.959 47 H 0.139 0.861 48 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.789 -11.770 -12.826 23.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.090 4.090 3 C -0.154 4.154 4 C -0.131 4.131 5 C -0.115 4.115 6 C 0.021 3.979 7 O -0.300 6.300 8 C 0.022 3.978 9 H 0.124 0.876 10 C -0.222 4.222 11 C 0.306 3.694 12 O -0.465 6.465 13 N -0.341 5.341 14 C -0.020 4.020 15 C -0.168 4.168 16 C 0.195 3.805 17 O -0.406 6.406 18 C -0.600 4.600 19 H 0.073 0.927 20 C -0.165 4.165 21 N -0.548 5.548 22 Si 0.787 3.213 23 H -0.196 1.196 24 H -0.206 1.206 25 H -0.203 1.203 26 C 0.002 3.998 27 C -0.120 4.120 28 C -0.150 4.150 29 H 0.101 0.899 30 H 0.095 0.905 31 H 0.090 0.910 32 H 0.154 0.846 33 H 0.138 0.862 34 H 0.082 0.918 35 H 0.105 0.895 36 H 0.119 0.881 37 H 0.104 0.896 38 H 0.076 0.924 39 H 0.095 0.905 40 H 0.115 0.885 41 H 0.093 0.907 42 H 0.086 0.914 43 H 0.234 0.766 44 H 0.083 0.917 45 H 0.090 0.910 46 H 0.060 0.940 47 H 0.157 0.843 48 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -16.907 -11.744 -12.227 23.942 hybrid contribution 1.600 0.962 0.751 2.013 sum -15.306 -10.782 -11.476 21.960 Atomic orbital electron populations 1.20850 0.89177 1.03624 1.03291 1.20363 0.97717 0.92992 0.97927 1.21283 0.93784 0.98826 1.01527 1.21270 0.95105 0.97853 0.98878 1.19749 0.94430 0.94203 1.03133 1.21615 0.90748 1.02495 0.83020 1.88095 1.19182 1.95206 1.27551 1.21882 0.83110 0.98230 0.94589 0.87604 1.22269 1.02557 0.92664 1.04719 1.20882 0.80429 0.79012 0.89120 1.90649 1.51108 1.57114 1.47653 1.48655 1.06663 1.52938 1.25812 1.22437 0.85169 1.00779 0.93621 1.23000 0.95504 0.98441 0.99901 1.19766 0.88938 0.82964 0.88869 1.86089 1.38285 1.43987 1.72280 1.21693 1.01576 1.42942 0.93744 0.92659 1.25598 0.98653 0.93926 0.98282 1.69608 1.22789 1.42815 1.19581 0.85515 0.78493 0.78004 0.79331 1.19606 1.20565 1.20314 1.22164 0.95398 0.93340 0.88902 1.21305 0.94841 0.97690 0.98144 1.21349 0.93968 0.98619 1.01075 0.89872 0.90493 0.91043 0.84598 0.86217 0.91793 0.89518 0.88054 0.89562 0.92354 0.90474 0.88467 0.90654 0.91383 0.76641 0.91739 0.90978 0.94045 0.84339 0.83704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.31 10.01 71.24 0.71 -0.60 16 2 C -0.09 -1.62 5.88 -19.87 -0.12 -1.74 16 3 C -0.14 -2.78 9.70 22.27 0.22 -2.57 16 4 C -0.11 -2.68 9.70 22.27 0.22 -2.46 16 5 C -0.12 -2.70 5.51 -19.86 -0.11 -2.81 16 6 C 0.10 2.15 5.87 71.24 0.42 2.57 16 7 O -0.38 -11.78 9.53 -130.24 -1.24 -13.02 16 8 C 0.08 2.33 2.54 29.84 0.08 2.41 16 9 H 0.11 2.47 7.51 -2.38 -0.02 2.45 16 10 C -0.16 -3.42 9.44 71.98 0.68 -2.74 16 11 C 0.52 20.39 7.17 87.65 0.63 21.02 16 12 O -0.59 -28.77 16.84 15.69 0.26 -28.51 16 13 N -0.61 -23.81 3.34 -811.14 -2.71 -26.52 16 14 C 0.10 3.27 6.07 86.68 0.53 3.80 16 15 C -0.13 -5.25 5.64 31.78 0.18 -5.07 16 16 C 0.23 11.33 0.89 -10.15 -0.01 11.32 16 17 O -0.60 -30.82 13.18 -148.98 -1.96 -32.78 16 18 C -0.56 -29.24 8.25 25.60 0.21 -29.03 16 19 H 0.06 2.91 7.77 -2.91 -0.02 2.89 16 20 C 0.04 1.84 5.30 84.66 0.45 2.29 16 21 N -0.91 -45.62 10.79 21.45 0.23 -45.39 16 22 Si 0.96 40.73 29.54 68.60 2.03 42.76 16 23 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 24 H -0.28 -11.63 7.11 99.48 0.71 -10.92 16 25 H -0.28 -11.98 7.11 99.48 0.71 -11.27 16 26 C 0.12 5.76 6.06 86.85 0.53 6.29 16 27 C -0.10 -2.04 9.70 22.27 0.22 -1.82 16 28 C -0.13 -2.35 9.70 22.27 0.22 -2.13 16 29 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 30 H 0.08 0.74 8.09 -2.39 -0.02 0.72 16 31 H 0.07 0.77 8.09 -2.39 -0.02 0.75 16 32 H 0.14 2.24 8.06 -2.91 -0.02 2.21 16 33 H 0.12 2.77 8.06 -2.91 -0.02 2.75 16 34 H 0.06 1.31 8.03 -2.38 -0.02 1.30 16 35 H 0.09 1.39 7.92 -2.39 -0.02 1.37 16 36 H 0.10 1.42 7.98 -2.39 -0.02 1.40 16 37 H 0.09 1.63 5.52 -2.38 -0.01 1.62 16 38 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 39 H 0.08 2.24 7.96 -2.39 -0.02 2.22 16 40 H 0.10 2.41 6.05 -2.39 -0.01 2.40 16 41 H 0.07 3.17 7.85 -2.39 -0.02 3.15 16 42 H 0.07 2.73 8.03 -2.38 -0.02 2.71 16 43 H 0.38 19.82 6.93 -74.05 -0.51 19.31 16 44 H 0.27 13.02 8.31 -92.71 -0.77 12.25 16 45 H 0.07 3.25 8.02 -2.38 -0.02 3.23 16 46 H 0.04 2.11 8.08 -2.39 -0.02 2.09 16 47 H 0.14 2.20 8.06 -2.91 -0.02 2.17 16 48 H 0.15 1.79 8.06 -2.91 -0.02 1.77 16 Total: -1.00 -68.54 392.62 2.09 -66.45 By element: Atomic # 1 Polarization: 37.84 SS G_CDS: 0.45 Total: 38.29 kcal Atomic # 6 Polarization: -6.31 SS G_CDS: 5.04 Total: -1.28 kcal Atomic # 7 Polarization: -69.43 SS G_CDS: -2.47 Total: -71.90 kcal Atomic # 8 Polarization: -71.37 SS G_CDS: -2.94 Total: -74.31 kcal Atomic # 14 Polarization: 40.73 SS G_CDS: 2.03 Total: 42.76 kcal Total: -68.54 2.09 -66.45 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600063242.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.738 kcal (2) G-P(sol) polarization free energy of solvation -68.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.448 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds