Wall clock time and date at job start Tue Mar 31 2020 17:32:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38243 * 119.99835 * 2 1 4 4 C 1.38228 * 119.99731 * 179.80826 * 3 2 1 5 5 C 1.38229 * 120.00371 * 0.40712 * 4 3 2 6 6 C 1.50706 * 120.00417 * 179.83442 * 5 4 3 7 7 O 1.42905 * 109.46889 * 270.01891 * 6 5 4 8 8 C 1.42895 * 114.00205 * 179.97438 * 7 6 5 9 9 H 1.09007 * 109.46627 * 329.99862 * 8 7 6 10 10 C 1.52991 * 109.47215 * 89.99724 * 8 7 6 11 11 C 1.50693 * 109.47041 * 210.00088 * 8 7 6 12 12 O 1.21279 * 120.00361 * 359.97438 * 11 8 7 13 13 N 1.34786 * 120.00114 * 179.97438 * 11 8 7 14 14 C 1.47428 * 125.64418 * 0.02562 * 13 11 8 15 15 C 1.54908 * 104.82925 * 204.09195 * 14 13 11 16 16 C 1.55155 * 101.58495 * 322.99255 * 15 14 13 17 17 O 1.42901 * 110.72051 * 277.14316 * 16 15 14 18 18 C 1.50695 * 110.72315 * 154.04315 * 16 15 14 19 19 H 1.07995 * 120.00244 * 238.13084 * 18 16 15 20 20 C 1.37876 * 120.00183 * 58.12070 * 18 16 15 21 21 N 1.31515 * 119.99702 * 6.09534 * 20 18 16 22 22 Si 1.86801 * 120.00467 * 186.09213 * 20 18 16 23 23 H 1.48495 * 109.46980 * 94.98953 * 22 20 18 24 24 H 1.48496 * 109.47105 * 214.99204 * 22 20 18 25 25 H 1.48498 * 109.46652 * 334.99040 * 22 20 18 26 26 C 1.47016 * 125.64858 * 179.71643 * 13 11 8 27 27 C 1.38235 * 120.00203 * 359.84690 * 5 4 3 28 28 C 1.38235 * 119.99767 * 359.96148 * 27 5 4 29 29 H 1.08998 * 109.47021 * 269.72214 * 1 2 3 30 30 H 1.09003 * 109.47464 * 29.72435 * 1 2 3 31 31 H 1.09000 * 109.47010 * 149.72392 * 1 2 3 32 32 H 1.08001 * 119.99892 * 0.02562 * 3 2 1 33 33 H 1.08002 * 119.99865 * 180.23274 * 4 3 2 34 34 H 1.09000 * 109.46933 * 30.01319 * 6 5 4 35 35 H 1.08994 * 109.47269 * 150.02088 * 6 5 4 36 36 H 1.09004 * 109.47563 * 299.99750 * 10 8 7 37 37 H 1.09000 * 109.47360 * 60.00193 * 10 8 7 38 38 H 1.09004 * 109.47080 * 180.02562 * 10 8 7 39 39 H 1.08995 * 110.36699 * 322.93160 * 14 13 11 40 40 H 1.08997 * 110.36208 * 85.14840 * 14 13 11 41 41 H 1.09002 * 111.00357 * 81.06846 * 15 14 13 42 42 H 1.09004 * 111.00373 * 204.91664 * 15 14 13 43 43 H 0.96699 * 113.99226 * 298.54158 * 17 16 15 44 44 H 0.97000 * 120.00521 * 179.97438 * 21 20 18 45 45 H 1.08999 * 109.88130 * 298.38995 * 26 13 11 46 46 H 1.08999 * 109.88810 * 59.56052 * 26 13 11 47 47 H 1.08000 * 120.00441 * 179.97438 * 27 5 4 48 48 H 1.08002 * 120.00314 * 179.97438 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1981 1.1972 0.0000 4 6 3.5804 1.1972 0.0040 5 6 4.2716 0.0002 -0.0005 6 6 5.7787 0.0002 0.0001 7 8 6.2555 0.0060 -1.3470 8 6 7.6800 0.0070 -1.4594 9 1 8.1120 0.5175 -0.5985 10 6 8.1890 -1.4350 -1.5055 11 6 8.0837 0.7229 -2.7225 12 8 7.2351 1.1861 -3.4547 13 7 9.3880 0.8483 -3.0386 14 6 10.5180 0.3351 -2.2430 15 6 11.7219 1.2230 -2.6455 16 6 11.4585 1.4374 -4.1594 17 8 11.9435 0.3285 -4.9191 18 6 12.0878 2.7220 -4.6335 19 1 11.4763 3.4875 -5.0878 20 6 13.4444 2.9202 -4.4870 21 7 14.2075 1.9445 -4.0450 22 14 14.1985 4.5744 -4.9163 23 1 14.3035 5.4040 -3.6891 24 1 15.5519 4.3673 -5.4911 25 1 13.3393 5.2670 -5.9100 26 6 9.9189 1.5141 -4.2371 27 6 3.5806 -1.1970 -0.0058 28 6 2.1982 -1.1971 -0.0058 29 1 -0.3633 -0.0050 1.0276 30 1 -0.3634 0.8924 -0.5095 31 1 -0.3633 -0.8875 -0.5181 32 1 1.6581 2.1325 0.0004 33 1 4.1204 2.1325 0.0078 34 1 6.1418 0.8880 0.5178 35 1 6.1418 -0.8920 0.5102 36 1 7.8971 -1.9528 -0.5918 37 1 7.7571 -1.9455 -2.3662 38 1 9.2757 -1.4342 -1.5907 39 1 10.3100 0.4381 -1.1781 40 1 10.7140 -0.7080 -2.4914 41 1 11.7052 2.1710 -2.1079 42 1 12.6645 0.7002 -2.4832 43 1 12.8970 0.1868 -4.8430 44 1 15.1619 2.0837 -3.9423 45 1 9.5651 1.0030 -5.1324 46 1 9.6020 2.5568 -4.2531 47 1 4.1206 -2.1323 -0.0097 48 1 1.6582 -2.1324 -0.0104 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000600063243.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:32:07 Heat of formation + Delta-G solvation = -106.770983 kcal Electronic energy + Delta-G solvation = -28405.628628 eV Core-core repulsion = 24425.396778 eV Total energy + Delta-G solvation = -3980.231849 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -39.97933 -39.52688 -37.94798 -36.85183 -34.41725 -33.60967 -32.26233 -31.53234 -31.10945 -29.52522 -28.59904 -28.14617 -25.50902 -24.81855 -23.73871 -22.90574 -21.95449 -21.00683 -19.92787 -18.95103 -17.46529 -17.00171 -16.62624 -16.14603 -15.93405 -15.42411 -15.19968 -15.05449 -14.92770 -14.63624 -14.22942 -14.00503 -13.65141 -13.59046 -13.27564 -13.01749 -12.98656 -12.72665 -12.50986 -12.26878 -12.12600 -12.01737 -11.89387 -11.75241 -11.37542 -11.34702 -11.32621 -11.14296 -11.00733 -10.84577 -10.66737 -10.49527 -10.13853 -9.88454 -9.44602 -9.15694 -9.08118 -8.77234 -8.67252 -8.26056 -8.04043 -6.32496 -4.38836 1.05038 1.24741 2.97196 3.08267 3.17783 3.26048 3.30841 3.57566 4.10384 4.25053 4.56982 4.58505 4.70239 4.82858 4.83804 4.88086 4.95735 4.96584 5.08496 5.15199 5.26519 5.30077 5.33456 5.44750 5.53022 5.53767 5.59475 5.61909 5.73150 5.84394 5.87931 5.89138 5.94108 6.09973 6.19872 6.21468 6.39013 6.42728 6.43898 6.65955 6.81312 6.85363 6.88532 7.08880 7.25022 7.31537 7.70121 8.00020 8.05959 8.61243 8.65208 9.26572 9.38103 10.75391 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.026689 B = 0.002125 C = 0.002052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1048.852626 B =13173.812902 C =13643.947025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.084 4.084 3 C -0.124 4.124 4 C -0.091 4.091 5 C -0.092 4.092 6 C 0.100 3.900 7 O -0.350 6.350 8 C 0.076 3.924 9 H 0.084 0.916 10 C -0.177 4.177 11 C 0.523 3.477 12 O -0.533 6.533 13 N -0.607 5.607 14 C 0.092 3.908 15 C -0.135 4.135 16 C 0.247 3.753 17 O -0.586 6.586 18 C -0.535 4.535 19 H 0.065 0.935 20 C 0.073 3.927 21 N -0.895 5.895 22 Si 0.902 3.098 23 H -0.279 1.279 24 H -0.285 1.285 25 H -0.272 1.272 26 C 0.124 3.876 27 C -0.093 4.093 28 C -0.126 4.126 29 H 0.069 0.931 30 H 0.066 0.934 31 H 0.066 0.934 32 H 0.123 0.877 33 H 0.124 0.876 34 H 0.058 0.942 35 H 0.059 0.941 36 H 0.065 0.935 37 H 0.069 0.931 38 H 0.082 0.918 39 H 0.059 0.941 40 H 0.066 0.934 41 H 0.067 0.933 42 H 0.089 0.911 43 H 0.382 0.618 44 H 0.268 0.732 45 H 0.061 0.939 46 H 0.072 0.928 47 H 0.123 0.877 48 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.783 -6.690 13.352 22.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.084 4.084 3 C -0.142 4.142 4 C -0.109 4.109 5 C -0.092 4.092 6 C 0.024 3.976 7 O -0.268 6.268 8 C 0.015 3.985 9 H 0.102 0.898 10 C -0.234 4.234 11 C 0.310 3.690 12 O -0.410 6.410 13 N -0.341 5.341 14 C -0.030 4.030 15 C -0.174 4.174 16 C 0.207 3.793 17 O -0.395 6.395 18 C -0.573 4.573 19 H 0.083 0.917 20 C -0.130 4.130 21 N -0.534 5.534 22 Si 0.730 3.270 23 H -0.205 1.205 24 H -0.210 1.210 25 H -0.196 1.196 26 C 0.003 3.997 27 C -0.111 4.111 28 C -0.144 4.144 29 H 0.088 0.912 30 H 0.085 0.915 31 H 0.085 0.915 32 H 0.140 0.860 33 H 0.142 0.858 34 H 0.077 0.923 35 H 0.077 0.923 36 H 0.084 0.916 37 H 0.088 0.912 38 H 0.100 0.900 39 H 0.078 0.922 40 H 0.084 0.916 41 H 0.086 0.914 42 H 0.107 0.893 43 H 0.232 0.768 44 H 0.078 0.922 45 H 0.080 0.920 46 H 0.091 0.909 47 H 0.141 0.859 48 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -17.904 -6.540 12.694 22.901 hybrid contribution 1.397 0.894 0.258 1.679 sum -16.507 -5.645 12.952 21.728 Atomic orbital electron populations 1.20800 0.91231 1.02868 1.02231 1.19970 0.96090 0.93288 0.99048 1.21023 0.94052 0.97617 1.01534 1.21086 0.94205 0.97721 0.97865 1.19550 0.94062 0.93618 1.01975 1.21403 0.90743 1.00879 0.84625 1.88129 1.18785 1.94950 1.24934 1.21831 0.82885 0.96816 0.97006 0.89844 1.22368 1.02895 0.94946 1.03240 1.19857 0.81407 0.80610 0.87148 1.90687 1.49507 1.48851 1.51920 1.48563 1.04407 1.56051 1.25110 1.22623 0.87629 0.98740 0.94019 1.23306 0.95708 0.98475 0.99921 1.19493 0.86967 0.85910 0.86949 1.86147 1.29088 1.51821 1.72418 1.21502 0.93388 1.01410 1.40983 0.91717 1.24980 0.96906 0.97291 0.93823 1.69697 1.05826 1.31639 1.46215 0.86406 0.78504 0.83405 0.78720 1.20517 1.21034 1.19639 1.22075 0.94959 0.96639 0.86029 1.21038 0.94167 0.97531 0.98412 1.20998 0.94040 0.97553 1.01792 0.91201 0.91489 0.91526 0.85951 0.85794 0.92343 0.92325 0.91633 0.91193 0.89957 0.92216 0.91554 0.91396 0.89271 0.76773 0.92223 0.92026 0.90931 0.85907 0.86016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.77 10.01 36.00 0.36 -0.40 16 2 C -0.08 -0.80 5.88 -104.62 -0.62 -1.41 16 3 C -0.12 -1.26 9.70 -39.58 -0.38 -1.64 16 4 C -0.09 -1.03 9.70 -39.59 -0.38 -1.42 16 5 C -0.09 -1.08 5.51 -104.62 -0.58 -1.66 16 6 C 0.10 1.15 5.87 36.01 0.21 1.36 16 7 O -0.35 -5.46 9.50 -55.14 -0.52 -5.98 16 8 C 0.08 1.12 2.49 -27.89 -0.07 1.05 16 9 H 0.08 1.03 7.49 -51.92 -0.39 0.64 16 10 C -0.18 -2.17 9.34 37.15 0.35 -1.83 16 11 C 0.52 10.21 7.29 -10.98 -0.08 10.13 16 12 O -0.53 -12.56 16.83 -14.35 -0.24 -12.80 16 13 N -0.61 -11.92 3.32 -170.52 -0.57 -12.49 16 14 C 0.09 1.59 5.13 -2.53 -0.01 1.57 16 15 C -0.14 -2.81 5.43 -24.58 -0.13 -2.94 16 16 C 0.25 5.84 0.85 -89.93 -0.08 5.76 16 17 O -0.59 -14.39 13.06 -35.23 -0.46 -14.85 16 18 C -0.53 -13.80 8.22 -34.44 -0.28 -14.08 16 19 H 0.06 1.69 7.63 -52.49 -0.40 1.29 16 20 C 0.07 1.84 5.24 -17.82 -0.09 1.74 16 21 N -0.89 -22.43 10.71 55.43 0.59 -21.84 16 22 Si 0.90 20.01 29.54 -169.99 -5.02 14.99 16 23 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 24 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 25 H -0.27 -6.10 7.11 56.52 0.40 -5.69 16 26 C 0.12 2.81 6.23 -3.06 -0.02 2.79 16 27 C -0.09 -0.99 9.70 -39.58 -0.38 -1.37 16 28 C -0.13 -1.21 9.70 -39.58 -0.38 -1.59 16 29 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.07 0.41 8.08 -51.93 -0.42 -0.01 16 31 H 0.07 0.39 8.09 -51.93 -0.42 -0.03 16 32 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16 33 H 0.12 1.30 8.06 -52.49 -0.42 0.88 16 34 H 0.06 0.60 8.03 -51.93 -0.42 0.18 16 35 H 0.06 0.54 7.81 -51.93 -0.41 0.14 16 36 H 0.06 0.63 7.87 -51.93 -0.41 0.22 16 37 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 38 H 0.08 0.98 4.99 -51.93 -0.26 0.72 16 39 H 0.06 0.84 7.36 -51.93 -0.38 0.45 16 40 H 0.07 1.09 7.07 -51.93 -0.37 0.72 16 41 H 0.07 1.45 8.04 -51.93 -0.42 1.03 16 42 H 0.09 1.91 7.53 -51.93 -0.39 1.51 16 43 H 0.38 9.34 7.52 45.56 0.34 9.68 16 44 H 0.27 6.45 8.31 -40.82 -0.34 6.11 16 45 H 0.06 1.45 8.07 -51.93 -0.42 1.04 16 46 H 0.07 1.67 7.69 -51.93 -0.40 1.28 16 47 H 0.12 1.10 8.06 -52.49 -0.42 0.68 16 48 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 LS Contribution 390.67 15.07 5.89 5.89 Total: -1.00 -30.52 390.67 -9.73 -40.25 By element: Atomic # 1 Polarization: 17.58 SS G_CDS: -6.83 Total: 10.76 kcal Atomic # 6 Polarization: -1.35 SS G_CDS: -2.58 Total: -3.93 kcal Atomic # 7 Polarization: -34.36 SS G_CDS: 0.03 Total: -34.33 kcal Atomic # 8 Polarization: -32.41 SS G_CDS: -1.23 Total: -33.63 kcal Atomic # 14 Polarization: 20.01 SS G_CDS: -5.02 Total: 14.99 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -30.52 -9.73 -40.25 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600063243.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.518 kcal (2) G-P(sol) polarization free energy of solvation -30.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.253 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds