Wall clock time and date at job start Tue Mar 31 2020 17:32:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38243 * 119.99835 * 2 1 4 4 C 1.38228 * 119.99731 * 179.80826 * 3 2 1 5 5 C 1.38229 * 120.00371 * 0.40712 * 4 3 2 6 6 C 1.50706 * 120.00417 * 179.83442 * 5 4 3 7 7 O 1.42905 * 109.46889 * 270.01891 * 6 5 4 8 8 C 1.42895 * 114.00205 * 179.97438 * 7 6 5 9 9 H 1.09007 * 109.46627 * 329.99862 * 8 7 6 10 10 C 1.52991 * 109.47215 * 89.99724 * 8 7 6 11 11 C 1.50693 * 109.47041 * 210.00088 * 8 7 6 12 12 O 1.21279 * 120.00361 * 359.97438 * 11 8 7 13 13 N 1.34786 * 120.00114 * 179.97438 * 11 8 7 14 14 C 1.47428 * 125.64418 * 0.02562 * 13 11 8 15 15 C 1.54908 * 104.82925 * 204.09195 * 14 13 11 16 16 C 1.55155 * 101.58495 * 322.99255 * 15 14 13 17 17 O 1.42901 * 110.72051 * 277.14316 * 16 15 14 18 18 C 1.50695 * 110.72315 * 154.04315 * 16 15 14 19 19 H 1.07995 * 120.00244 * 238.13084 * 18 16 15 20 20 C 1.37876 * 120.00183 * 58.12070 * 18 16 15 21 21 N 1.31515 * 119.99702 * 6.09534 * 20 18 16 22 22 Si 1.86801 * 120.00467 * 186.09213 * 20 18 16 23 23 H 1.48495 * 109.46980 * 94.98953 * 22 20 18 24 24 H 1.48496 * 109.47105 * 214.99204 * 22 20 18 25 25 H 1.48498 * 109.46652 * 334.99040 * 22 20 18 26 26 C 1.47016 * 125.64858 * 179.71643 * 13 11 8 27 27 C 1.38235 * 120.00203 * 359.84690 * 5 4 3 28 28 C 1.38235 * 119.99767 * 359.96148 * 27 5 4 29 29 H 1.08998 * 109.47021 * 269.72214 * 1 2 3 30 30 H 1.09003 * 109.47464 * 29.72435 * 1 2 3 31 31 H 1.09000 * 109.47010 * 149.72392 * 1 2 3 32 32 H 1.08001 * 119.99892 * 0.02562 * 3 2 1 33 33 H 1.08002 * 119.99865 * 180.23274 * 4 3 2 34 34 H 1.09000 * 109.46933 * 30.01319 * 6 5 4 35 35 H 1.08994 * 109.47269 * 150.02088 * 6 5 4 36 36 H 1.09004 * 109.47563 * 299.99750 * 10 8 7 37 37 H 1.09000 * 109.47360 * 60.00193 * 10 8 7 38 38 H 1.09004 * 109.47080 * 180.02562 * 10 8 7 39 39 H 1.08995 * 110.36699 * 322.93160 * 14 13 11 40 40 H 1.08997 * 110.36208 * 85.14840 * 14 13 11 41 41 H 1.09002 * 111.00357 * 81.06846 * 15 14 13 42 42 H 1.09004 * 111.00373 * 204.91664 * 15 14 13 43 43 H 0.96699 * 113.99226 * 298.54158 * 17 16 15 44 44 H 0.97000 * 120.00521 * 179.97438 * 21 20 18 45 45 H 1.08999 * 109.88130 * 298.38995 * 26 13 11 46 46 H 1.08999 * 109.88810 * 59.56052 * 26 13 11 47 47 H 1.08000 * 120.00441 * 179.97438 * 27 5 4 48 48 H 1.08002 * 120.00314 * 179.97438 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1981 1.1972 0.0000 4 6 3.5804 1.1972 0.0040 5 6 4.2716 0.0002 -0.0005 6 6 5.7787 0.0002 0.0001 7 8 6.2555 0.0060 -1.3470 8 6 7.6800 0.0070 -1.4594 9 1 8.1120 0.5175 -0.5985 10 6 8.1890 -1.4350 -1.5055 11 6 8.0837 0.7229 -2.7225 12 8 7.2351 1.1861 -3.4547 13 7 9.3880 0.8483 -3.0386 14 6 10.5180 0.3351 -2.2430 15 6 11.7219 1.2230 -2.6455 16 6 11.4585 1.4374 -4.1594 17 8 11.9435 0.3285 -4.9191 18 6 12.0878 2.7220 -4.6335 19 1 11.4763 3.4875 -5.0878 20 6 13.4444 2.9202 -4.4870 21 7 14.2075 1.9445 -4.0450 22 14 14.1985 4.5744 -4.9163 23 1 14.3035 5.4040 -3.6891 24 1 15.5519 4.3673 -5.4911 25 1 13.3393 5.2670 -5.9100 26 6 9.9189 1.5141 -4.2371 27 6 3.5806 -1.1970 -0.0058 28 6 2.1982 -1.1971 -0.0058 29 1 -0.3633 -0.0050 1.0276 30 1 -0.3634 0.8924 -0.5095 31 1 -0.3633 -0.8875 -0.5181 32 1 1.6581 2.1325 0.0004 33 1 4.1204 2.1325 0.0078 34 1 6.1418 0.8880 0.5178 35 1 6.1418 -0.8920 0.5102 36 1 7.8971 -1.9528 -0.5918 37 1 7.7571 -1.9455 -2.3662 38 1 9.2757 -1.4342 -1.5907 39 1 10.3100 0.4381 -1.1781 40 1 10.7140 -0.7080 -2.4914 41 1 11.7052 2.1710 -2.1079 42 1 12.6645 0.7002 -2.4832 43 1 12.8970 0.1868 -4.8430 44 1 15.1619 2.0837 -3.9423 45 1 9.5651 1.0030 -5.1324 46 1 9.6020 2.5568 -4.2531 47 1 4.1206 -2.1323 -0.0097 48 1 1.6582 -2.1324 -0.0104 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000600063243.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:32:06 Heat of formation + Delta-G solvation = -125.089210 kcal Electronic energy + Delta-G solvation = -28406.422965 eV Core-core repulsion = 24425.396778 eV Total energy + Delta-G solvation = -3981.026187 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.36449 -40.42604 -39.33461 -38.29883 -36.17586 -34.40714 -34.22665 -32.71111 -31.85119 -31.10670 -29.95208 -29.21660 -27.20431 -25.80943 -24.96882 -23.66021 -23.38171 -21.76499 -21.66149 -20.47960 -19.17772 -18.39989 -17.85681 -17.23124 -16.94594 -16.81933 -16.68397 -16.45144 -16.06918 -15.93322 -15.69623 -15.00835 -14.79489 -14.60951 -14.40991 -14.30840 -14.12175 -13.89842 -13.70788 -13.42282 -13.32724 -13.27127 -13.21510 -13.02485 -12.84635 -12.79737 -12.55037 -12.45715 -12.34695 -12.24736 -11.97266 -11.87128 -11.82441 -11.28115 -11.03440 -10.63722 -10.50293 -10.14627 -9.84550 -9.67259 -9.52563 -8.25855 -6.38910 0.27381 0.48433 1.40425 1.44243 1.50859 1.53167 1.74785 2.38883 2.62407 2.99967 3.12242 3.42717 3.79581 3.84300 3.85630 3.92611 3.97312 4.01911 4.10974 4.12603 4.23469 4.25548 4.36399 4.40081 4.53930 4.58379 4.61583 4.62404 4.72660 4.78724 4.83587 4.84404 4.89683 4.94291 5.14946 5.16791 5.20221 5.21277 5.26964 5.46459 5.47301 5.52911 5.65516 5.67593 5.75879 6.04125 6.08981 6.11150 6.54092 6.64533 7.08724 7.30268 7.42883 8.80417 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.026689 B = 0.002125 C = 0.002052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1048.852626 B =13173.812902 C =13643.947025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.090 4.090 3 C -0.137 4.137 4 C -0.111 4.111 5 C -0.115 4.115 6 C 0.097 3.903 7 O -0.381 6.381 8 C 0.084 3.916 9 H 0.116 0.884 10 C -0.170 4.170 11 C 0.515 3.485 12 O -0.585 6.585 13 N -0.607 5.607 14 C 0.100 3.900 15 C -0.126 4.126 16 C 0.236 3.764 17 O -0.593 6.593 18 C -0.565 4.565 19 H 0.047 0.953 20 C 0.041 3.959 21 N -0.901 5.901 22 Si 0.956 3.044 23 H -0.272 1.272 24 H -0.278 1.278 25 H -0.280 1.280 26 C 0.129 3.871 27 C -0.103 4.103 28 C -0.133 4.133 29 H 0.083 0.917 30 H 0.071 0.929 31 H 0.075 0.925 32 H 0.137 0.863 33 H 0.122 0.878 34 H 0.068 0.932 35 H 0.086 0.914 36 H 0.100 0.900 37 H 0.051 0.949 38 H 0.089 0.911 39 H 0.105 0.895 40 H 0.081 0.919 41 H 0.058 0.942 42 H 0.084 0.916 43 H 0.380 0.620 44 H 0.272 0.728 45 H 0.040 0.960 46 H 0.056 0.944 47 H 0.137 0.863 48 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.089 -7.831 15.679 24.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.090 4.090 3 C -0.154 4.154 4 C -0.129 4.129 5 C -0.115 4.115 6 C 0.021 3.979 7 O -0.300 6.300 8 C 0.023 3.977 9 H 0.133 0.867 10 C -0.228 4.228 11 C 0.304 3.696 12 O -0.465 6.465 13 N -0.340 5.340 14 C -0.021 4.021 15 C -0.165 4.165 16 C 0.196 3.804 17 O -0.402 6.402 18 C -0.603 4.603 19 H 0.066 0.934 20 C -0.161 4.161 21 N -0.539 5.539 22 Si 0.782 3.218 23 H -0.198 1.198 24 H -0.204 1.204 25 H -0.205 1.205 26 C 0.006 3.994 27 C -0.121 4.121 28 C -0.151 4.151 29 H 0.101 0.899 30 H 0.090 0.910 31 H 0.094 0.906 32 H 0.154 0.846 33 H 0.140 0.860 34 H 0.086 0.914 35 H 0.104 0.896 36 H 0.119 0.881 37 H 0.070 0.930 38 H 0.107 0.893 39 H 0.123 0.877 40 H 0.099 0.901 41 H 0.077 0.923 42 H 0.102 0.898 43 H 0.230 0.770 44 H 0.082 0.918 45 H 0.059 0.941 46 H 0.075 0.925 47 H 0.155 0.845 48 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -18.196 -7.702 15.054 24.840 hybrid contribution 1.430 1.262 -0.505 1.973 sum -16.766 -6.440 14.548 23.114 Atomic orbital electron populations 1.20849 0.89234 1.03600 1.03280 1.20361 0.97688 0.93023 0.97964 1.21291 0.93855 0.98774 1.01519 1.21273 0.95040 0.97881 0.98752 1.19755 0.94517 0.94152 1.03091 1.21622 0.90642 1.02608 0.82984 1.88097 1.19097 1.95175 1.27659 1.21853 0.83180 0.97893 0.94740 0.86686 1.22356 1.03000 0.93089 1.04309 1.20950 0.80477 0.79797 0.88356 1.90654 1.50780 1.51014 1.54024 1.48612 1.05399 1.55739 1.24283 1.22731 0.84966 0.98364 0.96050 1.23090 0.97163 0.98788 0.97432 1.19607 0.87104 0.84909 0.88781 1.86133 1.28926 1.52097 1.73073 1.21679 0.94094 1.02248 1.42250 0.93445 1.25532 0.96985 0.99969 0.93647 1.69738 1.06072 1.32409 1.45708 0.85575 0.77641 0.80144 0.78424 1.19760 1.20360 1.20502 1.21790 0.94740 0.95869 0.86990 1.21305 0.94835 0.97767 0.98189 1.21342 0.94004 0.98609 1.01158 0.89883 0.91011 0.90577 0.84553 0.85981 0.91426 0.89612 0.88103 0.92955 0.89279 0.87718 0.90095 0.92296 0.89779 0.76975 0.91808 0.94146 0.92521 0.84469 0.83846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.28 10.01 71.23 0.71 -0.57 16 2 C -0.09 -1.59 5.88 -19.87 -0.12 -1.71 16 3 C -0.14 -2.68 9.70 22.27 0.22 -2.47 16 4 C -0.11 -2.52 9.70 22.27 0.22 -2.31 16 5 C -0.12 -2.60 5.51 -19.87 -0.11 -2.71 16 6 C 0.10 2.04 5.87 71.24 0.42 2.46 16 7 O -0.38 -11.39 9.50 -129.94 -1.23 -12.63 16 8 C 0.08 2.28 2.49 29.84 0.07 2.36 16 9 H 0.12 2.39 7.49 -2.38 -0.02 2.37 16 10 C -0.17 -3.62 9.34 71.98 0.67 -2.95 16 11 C 0.51 19.94 7.29 87.65 0.64 20.58 16 12 O -0.58 -28.39 16.83 16.01 0.27 -28.12 16 13 N -0.61 -23.58 3.32 -811.78 -2.70 -26.28 16 14 C 0.10 3.20 5.13 86.85 0.45 3.65 16 15 C -0.13 -5.12 5.43 31.99 0.17 -4.94 16 16 C 0.24 11.33 0.85 -10.35 -0.01 11.32 16 17 O -0.59 -29.56 13.06 -148.98 -1.95 -31.51 16 18 C -0.56 -29.82 8.22 25.60 0.21 -29.61 16 19 H 0.05 2.59 7.63 -2.91 -0.02 2.57 16 20 C 0.04 2.06 5.24 84.65 0.44 2.50 16 21 N -0.90 -44.72 10.71 21.45 0.23 -44.49 16 22 Si 0.96 40.99 29.54 68.60 2.03 43.02 16 23 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 24 H -0.28 -11.59 7.11 99.48 0.71 -10.89 16 25 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 26 C 0.13 6.03 6.23 86.74 0.54 6.57 16 27 C -0.10 -2.03 9.70 22.27 0.22 -1.81 16 28 C -0.13 -2.34 9.70 22.27 0.22 -2.12 16 29 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 30 H 0.07 0.75 8.08 -2.39 -0.02 0.73 16 31 H 0.08 0.72 8.09 -2.39 -0.02 0.70 16 32 H 0.14 2.13 8.06 -2.91 -0.02 2.11 16 33 H 0.12 2.64 8.06 -2.91 -0.02 2.61 16 34 H 0.07 1.26 8.03 -2.39 -0.02 1.24 16 35 H 0.09 1.30 7.81 -2.39 -0.02 1.28 16 36 H 0.10 1.46 7.87 -2.38 -0.02 1.44 16 37 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 38 H 0.09 1.77 4.99 -2.39 -0.01 1.75 16 39 H 0.10 2.47 7.36 -2.39 -0.02 2.45 16 40 H 0.08 2.41 7.07 -2.39 -0.02 2.39 16 41 H 0.06 2.47 8.04 -2.39 -0.02 2.45 16 42 H 0.08 3.50 7.53 -2.38 -0.02 3.48 16 43 H 0.38 18.77 7.52 -74.06 -0.56 18.21 16 44 H 0.27 12.84 8.31 -92.71 -0.77 12.07 16 45 H 0.04 2.01 8.07 -2.39 -0.02 1.99 16 46 H 0.06 2.77 7.69 -2.39 -0.02 2.75 16 47 H 0.14 2.17 8.06 -2.91 -0.02 2.15 16 48 H 0.14 1.78 8.06 -2.91 -0.02 1.76 16 Total: -1.00 -68.33 390.67 2.01 -66.32 By element: Atomic # 1 Polarization: 35.03 SS G_CDS: 0.40 Total: 35.44 kcal Atomic # 6 Polarization: -6.71 SS G_CDS: 4.96 Total: -1.75 kcal Atomic # 7 Polarization: -68.31 SS G_CDS: -2.47 Total: -70.78 kcal Atomic # 8 Polarization: -69.34 SS G_CDS: -2.91 Total: -72.25 kcal Atomic # 14 Polarization: 40.99 SS G_CDS: 2.03 Total: 43.02 kcal Total: -68.33 2.01 -66.32 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600063243.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.769 kcal (2) G-P(sol) polarization free energy of solvation -68.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.320 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds