Wall clock time and date at job start Tue Mar 31 2020 19:02:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34223 * 117.00116 * 2 1 4 4 O 1.20825 * 120.00262 * 359.97438 * 3 2 1 5 5 C 1.50705 * 120.00184 * 179.97438 * 3 2 1 6 6 H 1.09001 * 109.46814 * 30.86591 * 5 3 2 7 7 C 1.53005 * 109.46898 * 270.87005 * 5 3 2 8 8 N 1.46499 * 109.47127 * 64.99735 * 7 5 3 9 9 C 1.34771 * 120.00220 * 179.97438 * 8 7 5 10 10 O 1.21614 * 119.99542 * 359.97438 * 9 8 7 11 11 C 1.47427 * 120.00510 * 179.97438 * 9 8 7 12 12 C 1.39228 * 120.27973 * 6.14665 * 11 9 8 13 13 C 1.38220 * 120.09012 * 180.02562 * 12 11 9 14 14 C 1.38828 * 120.68093 * 0.02562 * 13 12 11 15 15 C 1.37600 * 120.56787 * 359.97438 * 14 13 12 16 16 C 1.40712 * 119.88009 * 359.67959 * 15 14 13 17 17 C 1.40894 * 120.32782 * 180.29654 * 16 15 14 18 18 H 1.08000 * 119.99719 * 213.56452 * 17 16 15 19 19 C 1.40269 * 120.00045 * 33.57318 * 17 16 15 20 20 N 1.30627 * 119.99991 * 15.76953 * 19 17 16 21 21 Si 1.86801 * 119.99924 * 195.77696 * 19 17 16 22 22 H 1.48495 * 109.47179 * 59.99538 * 21 19 17 23 23 H 1.48503 * 109.46991 * 179.97438 * 21 19 17 24 24 H 1.48494 * 109.46892 * 299.99680 * 21 19 17 25 25 C 1.52993 * 109.47539 * 150.86647 * 5 3 2 26 26 C 1.52998 * 109.47203 * 295.62880 * 25 5 3 27 27 C 1.52998 * 109.47207 * 296.54230 * 26 25 5 28 28 C 1.53005 * 109.47004 * 176.54641 * 26 25 5 29 29 H 1.09000 * 109.46514 * 60.00165 * 1 2 3 30 30 H 1.09000 * 109.47576 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47342 * 300.00681 * 1 2 3 32 32 H 1.08994 * 109.46929 * 184.99431 * 7 5 3 33 33 H 1.08995 * 109.47038 * 304.99474 * 7 5 3 34 34 H 0.97005 * 120.00238 * 0.02562 * 8 7 5 35 35 H 1.07996 * 119.95480 * 359.97390 * 12 11 9 36 36 H 1.08000 * 119.66305 * 179.97438 * 13 12 11 37 37 H 1.07999 * 119.71696 * 179.97438 * 14 13 12 38 38 H 1.07995 * 120.05923 * 179.97438 * 15 14 13 39 39 H 0.96998 * 120.00057 * 180.02562 * 20 19 17 40 40 H 1.09002 * 109.47143 * 175.62417 * 25 5 3 41 41 H 1.09005 * 109.46784 * 55.62824 * 25 5 3 42 42 H 1.09000 * 109.47104 * 56.54637 * 26 25 5 43 43 H 1.09000 * 109.47421 * 300.00213 * 27 26 25 44 44 H 1.09001 * 109.46791 * 59.99846 * 27 26 25 45 45 H 1.08993 * 109.47270 * 180.02562 * 27 26 25 46 46 H 1.08999 * 109.47417 * 55.46443 * 28 26 25 47 47 H 1.09000 * 109.47072 * 175.46190 * 28 26 25 48 48 H 1.09002 * 109.46899 * 295.46024 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2748 0.0006 6 1 3.9756 0.4128 -0.5263 7 6 4.0762 1.2799 1.4432 8 7 3.7549 -0.0001 2.0792 9 6 4.1105 -0.2244 3.3597 10 8 4.6986 0.6356 3.9869 11 6 3.7867 -1.5123 4.0000 12 6 3.2292 -2.5469 3.2534 13 6 2.9267 -3.7525 3.8579 14 6 3.1722 -3.9483 5.2102 15 6 3.7223 -2.9447 5.9740 16 6 4.0463 -1.7102 5.3814 17 6 4.6158 -0.6782 6.1533 18 1 4.3849 0.3530 5.9305 19 6 5.4826 -0.9901 7.2110 20 7 6.0060 -2.1839 7.2962 21 14 5.8885 0.3016 8.4979 22 1 4.6398 0.7365 9.1737 23 1 6.8190 -0.2747 9.5015 24 1 6.5289 1.4698 7.8419 25 6 4.0101 2.5596 -0.7017 26 6 3.5947 2.5059 -2.1733 27 6 4.3236 1.3536 -2.8673 28 6 3.9615 3.8256 -2.8551 29 1 -0.3632 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 5.1563 1.4261 1.4463 33 1 3.5984 2.0897 1.9945 34 1 3.2868 -0.6865 1.5785 35 1 3.0322 -2.4069 2.2009 36 1 2.4940 -4.5503 3.2723 37 1 2.9294 -4.8965 5.6666 38 1 3.9095 -3.1057 7.0253 39 1 6.6052 -2.3997 8.0278 40 1 5.0937 2.6554 -0.6333 41 1 3.5385 3.4173 -0.2220 42 1 2.5183 2.3486 -2.2414 43 1 5.4000 1.5109 -2.7991 44 1 4.0623 0.4134 -2.3815 45 1 4.0280 1.3157 -3.9157 46 1 5.0246 4.0227 -2.7172 47 1 3.7397 3.7582 -3.9202 48 1 3.3814 4.6361 -2.4137 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601233609.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:02:08 Heat of formation + Delta-G solvation = -143.200200 kcal Electronic energy + Delta-G solvation = -29129.618783 eV Core-core repulsion = 25147.807244 eV Total energy + Delta-G solvation = -3981.811539 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -41.89592 -40.62435 -38.75300 -38.26156 -37.17971 -36.00837 -35.43522 -32.92986 -31.74940 -31.11937 -28.82149 -28.02294 -27.62389 -26.71114 -24.88111 -23.77981 -22.70363 -21.69388 -21.21664 -20.57694 -19.38818 -18.94852 -18.15846 -17.71203 -17.20814 -17.14493 -16.84539 -16.03992 -15.91681 -15.85821 -15.56433 -15.10915 -14.92022 -14.73754 -14.46806 -14.41135 -14.21986 -13.87582 -13.68253 -13.40971 -13.20256 -13.05851 -12.98483 -12.87576 -12.79332 -12.72696 -12.52569 -12.48600 -12.29726 -11.93876 -11.84182 -11.72263 -11.62363 -11.52791 -11.45507 -11.36024 -11.08664 -10.28959 -10.01770 -9.38154 -9.23712 -8.70599 -6.33890 0.53874 1.03438 1.07571 1.33982 1.45139 1.51901 1.69247 2.21093 2.33811 2.37197 2.77889 3.47955 3.59768 3.72951 3.76182 4.03264 4.08150 4.14011 4.28254 4.31599 4.35130 4.39054 4.41862 4.53893 4.59499 4.69438 4.72209 4.75381 4.82672 4.88158 4.94549 4.99855 5.05917 5.09651 5.12373 5.24305 5.27481 5.34205 5.35524 5.46274 5.49446 5.57684 5.63243 5.84761 6.04519 6.12200 6.36170 6.62873 6.65831 6.78310 6.92176 7.01411 7.64222 8.28585 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.013750 B = 0.003203 C = 0.002828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2035.906361 B = 8739.829958 C = 9897.097999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.361 6.361 3 C 0.467 3.533 4 O -0.530 6.530 5 C -0.083 4.083 6 H 0.135 0.865 7 C 0.135 3.865 8 N -0.732 5.732 9 C 0.561 3.439 10 O -0.577 6.577 11 C -0.284 4.284 12 C -0.050 4.050 13 C -0.238 4.238 14 C -0.089 4.089 15 C -0.182 4.182 16 C 0.118 3.882 17 C -0.462 4.462 18 H 0.082 0.918 19 C 0.036 3.964 20 N -0.817 5.817 21 Si 0.974 3.026 22 H -0.259 1.259 23 H -0.259 1.259 24 H -0.271 1.271 25 C -0.100 4.100 26 C -0.097 4.097 27 C -0.152 4.152 28 C -0.143 4.143 29 H 0.068 0.932 30 H 0.132 0.868 31 H 0.051 0.949 32 H 0.088 0.912 33 H 0.049 0.951 34 H 0.408 0.592 35 H 0.131 0.869 36 H 0.133 0.867 37 H 0.120 0.880 38 H 0.094 0.906 39 H 0.290 0.710 40 H 0.102 0.898 41 H 0.067 0.933 42 H 0.051 0.949 43 H 0.068 0.932 44 H 0.057 0.943 45 H 0.061 0.939 46 H 0.066 0.934 47 H 0.062 0.938 48 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.255 3.043 -18.345 19.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.277 6.277 3 C 0.311 3.689 4 O -0.419 6.419 5 C -0.102 4.102 6 H 0.153 0.847 7 C 0.011 3.989 8 N -0.388 5.388 9 C 0.354 3.646 10 O -0.458 6.458 11 C -0.289 4.289 12 C -0.068 4.068 13 C -0.257 4.257 14 C -0.108 4.108 15 C -0.201 4.201 16 C 0.114 3.886 17 C -0.490 4.490 18 H 0.100 0.900 19 C -0.179 4.179 20 N -0.443 5.443 21 Si 0.795 3.205 22 H -0.183 1.183 23 H -0.183 1.183 24 H -0.196 1.196 25 C -0.137 4.137 26 C -0.116 4.116 27 C -0.209 4.209 28 C -0.201 4.201 29 H 0.087 0.913 30 H 0.150 0.850 31 H 0.070 0.930 32 H 0.106 0.894 33 H 0.068 0.932 34 H 0.245 0.755 35 H 0.148 0.852 36 H 0.151 0.849 37 H 0.138 0.862 38 H 0.112 0.888 39 H 0.101 0.899 40 H 0.121 0.879 41 H 0.085 0.915 42 H 0.070 0.930 43 H 0.087 0.913 44 H 0.076 0.924 45 H 0.080 0.920 46 H 0.085 0.915 47 H 0.081 0.919 48 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -4.908 3.803 -17.783 18.835 hybrid contribution -0.244 0.306 0.762 0.856 sum -5.151 4.109 -17.021 18.252 Atomic orbital electron populations 1.23530 0.74948 1.05761 1.02235 1.86490 1.24928 1.32822 1.83413 1.23990 0.92477 0.81390 0.71026 1.90636 1.67744 1.37211 1.46288 1.21512 0.86815 1.04685 0.97173 0.84745 1.21195 1.01534 0.86109 0.90098 1.45858 1.61997 1.18094 1.12844 1.18449 0.77692 0.87407 0.81050 1.90659 1.43368 1.47751 1.64068 1.19780 1.18722 0.95777 0.94573 1.21057 0.94906 0.92495 0.98355 1.20779 1.11422 0.98403 0.95067 1.21166 0.97057 0.97659 0.94872 1.21203 1.04542 0.95289 0.99064 1.17823 0.87629 0.92676 0.90438 1.20115 1.22793 0.95539 1.10554 0.89975 1.26767 0.94188 0.98086 0.98907 1.69747 1.22518 1.22373 1.29616 0.85378 0.79190 0.78555 0.77331 1.18287 1.18264 1.19631 1.21624 1.03035 0.94028 0.95060 1.21118 0.99582 0.97153 0.93728 1.21956 1.01104 0.97333 1.00533 1.21784 1.02049 0.95778 1.00448 0.91298 0.85028 0.93009 0.89369 0.93215 0.75484 0.85151 0.84867 0.86196 0.88753 0.89888 0.87928 0.91470 0.93018 0.91336 0.92410 0.91962 0.91543 0.91858 0.93342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.51 10.56 113.37 1.20 1.71 16 2 O -0.36 -8.23 9.82 -51.35 -0.50 -8.73 16 3 C 0.47 11.87 5.78 71.24 0.41 12.28 16 4 O -0.53 -16.11 15.31 21.97 0.34 -15.78 16 5 C -0.08 -1.77 2.18 -11.54 -0.03 -1.79 16 6 H 0.13 2.28 6.31 -2.39 -0.02 2.27 16 7 C 0.13 3.91 5.05 86.38 0.44 4.35 16 8 N -0.73 -25.23 5.30 -466.37 -2.47 -27.70 16 9 C 0.56 26.26 7.72 86.66 0.67 26.93 16 10 O -0.58 -31.58 13.58 -4.08 -0.06 -31.64 16 11 C -0.28 -13.88 5.92 -19.70 -0.12 -13.99 16 12 C -0.05 -1.97 9.51 22.50 0.21 -1.76 16 13 C -0.24 -9.15 10.03 22.41 0.22 -8.93 16 14 C -0.09 -3.82 10.01 22.26 0.22 -3.60 16 15 C -0.18 -9.35 8.65 22.72 0.20 -9.16 16 16 C 0.12 6.54 5.48 -21.10 -0.12 6.42 16 17 C -0.46 -26.78 7.69 23.41 0.18 -26.60 16 18 H 0.08 5.03 5.90 -2.91 -0.02 5.01 16 19 C 0.04 1.95 5.12 85.37 0.44 2.39 16 20 N -0.82 -43.87 11.48 21.88 0.25 -43.62 16 21 Si 0.97 41.65 29.59 68.60 2.03 43.68 16 22 H -0.26 -10.72 7.11 99.48 0.71 -10.02 16 23 H -0.26 -10.06 7.11 99.48 0.71 -9.35 16 24 H -0.27 -11.89 7.11 99.48 0.71 -11.19 16 25 C -0.10 -1.83 3.88 30.59 0.12 -1.71 16 26 C -0.10 -1.58 2.78 -10.79 -0.03 -1.61 16 27 C -0.15 -1.97 8.92 71.98 0.64 -1.33 16 28 C -0.14 -2.02 9.19 71.98 0.66 -1.36 16 29 H 0.07 1.13 8.13 -2.39 -0.02 1.11 16 30 H 0.13 1.58 8.14 -2.39 -0.02 1.56 16 31 H 0.05 1.07 8.13 -2.39 -0.02 1.05 16 32 H 0.09 2.49 8.14 -2.39 -0.02 2.47 16 33 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 34 H 0.41 11.95 5.65 -92.70 -0.52 11.43 16 35 H 0.13 4.05 6.44 -2.91 -0.02 4.03 16 36 H 0.13 4.05 8.06 -2.91 -0.02 4.03 16 37 H 0.12 4.37 8.06 -2.91 -0.02 4.35 16 38 H 0.09 5.06 6.78 -2.91 -0.02 5.04 16 39 H 0.29 14.06 8.29 -92.71 -0.77 13.29 16 40 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 41 H 0.07 1.46 7.70 -2.38 -0.02 1.44 16 42 H 0.05 1.02 6.89 -2.39 -0.02 1.01 16 43 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 44 H 0.06 0.75 6.42 -2.39 -0.02 0.73 16 45 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 46 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 47 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 48 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 Total: -1.00 -71.74 390.91 5.36 -66.38 By element: Atomic # 1 Polarization: 34.73 SS G_CDS: 0.45 Total: 35.17 kcal Atomic # 6 Polarization: -23.10 SS G_CDS: 5.32 Total: -17.77 kcal Atomic # 7 Polarization: -69.10 SS G_CDS: -2.22 Total: -71.32 kcal Atomic # 8 Polarization: -55.92 SS G_CDS: -0.22 Total: -56.14 kcal Atomic # 14 Polarization: 41.65 SS G_CDS: 2.03 Total: 43.68 kcal Total: -71.74 5.36 -66.38 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601233609.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.817 kcal (2) G-P(sol) polarization free energy of solvation -71.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.383 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds