Wall clock time and date at job start Tue Mar 31 2020 17:07:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42906 * 113.99773 * 2 1 4 4 C 1.52998 * 109.46741 * 179.97438 * 3 2 1 5 5 N 1.46498 * 109.47422 * 65.00328 * 4 3 2 6 6 C 1.46501 * 119.99902 * 269.99771 * 5 4 3 7 7 C 1.50700 * 109.47270 * 264.38033 * 6 5 4 8 8 H 1.08002 * 119.99616 * 359.97438 * 7 6 5 9 9 C 1.37877 * 119.99911 * 179.97438 * 7 6 5 10 10 N 1.31512 * 120.00311 * 359.97438 * 9 7 6 11 11 Si 1.86803 * 119.99833 * 179.97438 * 9 7 6 12 12 H 1.48502 * 109.47039 * 0.02562 * 11 9 7 13 13 H 1.48494 * 109.46945 * 119.99977 * 11 9 7 14 14 H 1.48503 * 109.47249 * 240.00106 * 11 9 7 15 15 C 1.34779 * 120.00380 * 89.99637 * 5 4 3 16 16 O 1.21277 * 119.99502 * 5.75234 * 15 5 4 17 17 C 1.50698 * 120.00038 * 185.75418 * 15 5 4 18 18 H 1.08997 * 110.86552 * 316.64747 * 17 15 5 19 19 C 1.54706 * 110.94302 * 80.38562 * 17 15 5 20 20 O 1.43762 * 102.80079 * 143.50713 * 19 17 15 21 21 C 1.36137 * 109.28465 * 332.45794 * 20 19 17 22 22 C 1.39287 * 129.87653 * 198.58502 * 21 20 19 23 23 C 1.37936 * 120.24239 * 180.42298 * 22 21 20 24 24 C 1.50698 * 119.82661 * 179.97438 * 23 22 21 25 25 C 1.38286 * 120.35004 * 359.93977 * 23 22 21 26 26 C 1.50702 * 120.11670 * 179.86590 * 25 23 22 27 27 C 1.38347 * 119.76519 * 359.83874 * 25 23 22 28 28 C 1.37738 * 119.97766 * 0.02562 * 27 25 23 29 29 H 1.08999 * 109.47292 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47360 * 300.00295 * 1 2 3 31 31 H 1.09004 * 109.47255 * 59.99766 * 1 2 3 32 32 H 1.08993 * 109.46968 * 59.99758 * 3 2 1 33 33 H 1.09003 * 109.46817 * 299.99829 * 3 2 1 34 34 H 1.09000 * 109.47446 * 304.99580 * 4 3 2 35 35 H 1.09007 * 109.46779 * 185.00161 * 4 3 2 36 36 H 1.09007 * 109.47068 * 24.38019 * 6 5 4 37 37 H 1.08999 * 109.47272 * 144.37566 * 6 5 4 38 38 H 0.96996 * 120.00038 * 180.02562 * 10 9 7 39 39 H 1.09008 * 110.74703 * 25.17894 * 19 17 15 40 40 H 1.09002 * 110.75280 * 261.83358 * 19 17 15 41 41 H 1.07999 * 119.88605 * 0.37539 * 22 21 20 42 42 H 1.09001 * 109.47525 * 269.98326 * 24 23 22 43 43 H 1.08999 * 109.46989 * 29.98031 * 24 23 22 44 44 H 1.09000 * 109.47214 * 149.97686 * 24 23 22 45 45 H 1.08998 * 109.47276 * 269.97334 * 26 25 23 46 46 H 1.09000 * 109.46979 * 29.97498 * 26 25 23 47 47 H 1.09003 * 109.46993 * 149.97502 * 26 25 23 48 48 H 1.08006 * 120.01462 * 179.97438 * 27 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 7 3.9766 0.5641 -1.2509 6 6 4.1063 -0.8924 -1.3403 7 6 5.5365 -1.2867 -1.0755 8 1 6.2751 -0.5281 -0.8624 9 6 5.9020 -2.6158 -1.1054 10 7 5.0025 -3.5396 -1.3644 11 14 7.6750 -3.1044 -0.7779 12 1 8.4833 -1.8869 -0.5139 13 1 7.7310 -4.0012 0.4043 14 1 8.2201 -3.8135 -1.9634 15 6 4.2633 1.3330 -2.3200 16 8 4.2573 2.5414 -2.2169 17 6 4.5914 0.6912 -3.6435 18 1 5.2643 -0.1555 -3.5082 19 6 3.3029 0.2607 -4.3837 20 8 3.6233 0.5241 -5.7602 21 6 4.5385 1.5299 -5.8243 22 6 4.8875 2.3530 -6.8924 23 6 5.8621 3.3167 -6.7373 24 6 6.2327 4.2017 -7.8993 25 6 6.5004 3.4755 -5.5209 26 6 7.5666 4.5280 -5.3581 27 6 6.1563 2.6651 -4.4537 28 6 5.1814 1.7040 -4.6057 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 1.6885 1.8464 0.8899 33 1 1.6885 1.8464 -0.8900 34 1 3.8507 0.5686 0.8427 35 1 3.9783 2.1766 0.0902 36 1 3.4573 -1.3611 -0.6004 37 1 3.8171 -1.2224 -2.3381 38 1 5.2596 -4.4746 -1.3850 39 1 2.4534 0.8637 -4.0628 40 1 3.1051 -0.8001 -4.2296 41 1 4.3938 2.2358 -7.8458 42 1 7.0387 3.7371 -8.4674 43 1 5.3646 4.3368 -8.5445 44 1 6.5629 5.1714 -7.5267 45 1 8.5389 4.1016 -5.6049 46 1 7.3566 5.3641 -6.0253 47 1 7.5754 4.8798 -4.3264 48 1 6.6526 2.7853 -3.5020 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000613772633.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:07:20 Heat of formation + Delta-G solvation = -90.555524 kcal Electronic energy + Delta-G solvation = -29842.969151 eV Core-core repulsion = 25863.440457 eV Total energy + Delta-G solvation = -3979.528694 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.11557 -38.98741 -37.90555 -37.39143 -34.97898 -33.05010 -32.60522 -31.81608 -31.06143 -29.49211 -27.09577 -26.81775 -26.13422 -25.95277 -23.73525 -22.89172 -22.26950 -21.63765 -20.29576 -18.37321 -17.10551 -16.75024 -16.51565 -16.25339 -15.94557 -15.92624 -15.22626 -15.01134 -14.71681 -14.57539 -14.18005 -14.10638 -13.89266 -13.75729 -13.49664 -12.81006 -12.72415 -12.65586 -12.43232 -12.17070 -12.04546 -12.01172 -11.87031 -11.78698 -11.54534 -11.51298 -11.31078 -11.14400 -10.96608 -10.89852 -10.59635 -10.46023 -10.26771 -10.14286 -9.74385 -9.45383 -9.11787 -8.55895 -8.44735 -7.77883 -7.67688 -6.18028 -4.25712 1.52491 1.65097 3.19480 3.22065 3.31045 3.35237 3.50145 3.71922 4.02628 4.10465 4.34237 4.71800 4.89297 5.01798 5.09084 5.14528 5.16667 5.26881 5.33310 5.36505 5.42780 5.44899 5.52722 5.54931 5.59679 5.64555 5.64689 5.72894 5.79364 5.82308 5.85274 5.88001 5.95571 6.04109 6.10825 6.22582 6.30647 6.41181 6.51165 6.71583 6.77484 6.82535 6.91216 7.23914 7.41827 7.46035 7.54186 7.78381 8.06744 8.27199 8.76847 8.93555 9.42192 10.88412 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.009262 B = 0.004446 C = 0.003589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3022.496075 B = 6296.109935 C = 7799.951822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.375 6.375 3 C 0.048 3.952 4 C 0.121 3.879 5 N -0.586 5.586 6 C 0.239 3.761 7 C -0.543 4.543 8 H 0.060 0.940 9 C 0.067 3.933 10 N -0.887 5.887 11 Si 0.893 3.107 12 H -0.272 1.272 13 H -0.282 1.282 14 H -0.282 1.282 15 C 0.529 3.471 16 O -0.565 6.565 17 C -0.098 4.098 18 H 0.137 0.863 19 C 0.072 3.928 20 O -0.303 6.303 21 C 0.104 3.896 22 C -0.142 4.142 23 C -0.060 4.060 24 C -0.112 4.112 25 C -0.122 4.122 26 C -0.107 4.107 27 C -0.040 4.040 28 C -0.138 4.138 29 H 0.084 0.916 30 H 0.035 0.965 31 H 0.035 0.965 32 H 0.051 0.949 33 H 0.046 0.954 34 H 0.087 0.913 35 H 0.089 0.911 36 H 0.052 0.948 37 H 0.032 0.968 38 H 0.265 0.735 39 H 0.073 0.927 40 H 0.119 0.881 41 H 0.124 0.876 42 H 0.070 0.930 43 H 0.064 0.936 44 H 0.070 0.930 45 H 0.065 0.935 46 H 0.066 0.934 47 H 0.063 0.937 48 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.017 11.319 -5.958 13.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.293 6.293 3 C -0.030 4.030 4 C -0.003 4.003 5 N -0.316 5.316 6 C 0.119 3.881 7 C -0.581 4.581 8 H 0.078 0.922 9 C -0.136 4.136 10 N -0.525 5.525 11 Si 0.721 3.279 12 H -0.197 1.197 13 H -0.208 1.208 14 H -0.208 1.208 15 C 0.316 3.684 16 O -0.445 6.445 17 C -0.119 4.119 18 H 0.155 0.845 19 C -0.003 4.003 20 O -0.217 6.217 21 C 0.059 3.941 22 C -0.161 4.161 23 C -0.060 4.060 24 C -0.168 4.168 25 C -0.122 4.122 26 C -0.164 4.164 27 C -0.058 4.058 28 C -0.139 4.139 29 H 0.102 0.898 30 H 0.053 0.947 31 H 0.053 0.947 32 H 0.069 0.931 33 H 0.064 0.936 34 H 0.106 0.894 35 H 0.107 0.893 36 H 0.070 0.930 37 H 0.050 0.950 38 H 0.074 0.926 39 H 0.091 0.909 40 H 0.137 0.863 41 H 0.142 0.858 42 H 0.088 0.912 43 H 0.083 0.917 44 H 0.089 0.911 45 H 0.084 0.916 46 H 0.085 0.915 47 H 0.082 0.918 48 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -3.057 11.415 -6.067 13.284 hybrid contribution 0.651 -0.494 0.577 1.000 sum -2.406 10.921 -5.490 12.458 Atomic orbital electron populations 1.22689 0.82092 1.02462 0.99197 1.88056 1.18714 1.27365 1.95208 1.23031 0.95254 0.84967 0.99756 1.21355 0.90998 0.99798 0.88176 1.48159 1.63495 1.10072 1.09841 1.19521 0.97230 0.72565 0.98765 1.21568 0.94500 0.92444 1.49608 0.92159 1.24915 0.97625 0.96302 0.94755 1.69931 1.33438 1.00954 1.48172 0.86509 0.84682 0.78679 0.78046 1.19687 1.20821 1.20788 1.19892 0.76648 0.86569 0.85250 1.90600 1.54385 1.14355 1.85203 1.21552 0.98616 0.99088 0.92671 0.84504 1.23744 0.95661 1.03281 0.77640 1.86798 1.57792 1.49082 1.28032 1.19509 0.90505 0.89174 0.94953 1.19918 1.01793 0.96602 0.97749 1.19314 0.95530 0.96243 0.94955 1.20812 1.01763 0.98599 0.95652 1.19531 1.00087 0.99629 0.92994 1.20732 0.96597 0.96631 1.02418 1.20123 0.94940 0.92613 0.98174 1.20336 0.99775 0.99348 0.94430 0.89788 0.94690 0.94651 0.93111 0.93553 0.89417 0.89318 0.93011 0.94979 0.92562 0.90904 0.86269 0.85829 0.91176 0.91735 0.91099 0.91581 0.91517 0.91760 0.85905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 11.01 101.05 1.11 1.53 16 2 O -0.37 -6.42 9.63 -35.23 -0.34 -6.76 16 3 C 0.05 0.75 6.28 37.16 0.23 0.99 16 4 C 0.12 2.16 5.83 -4.04 -0.02 2.14 16 5 N -0.59 -12.10 2.43 -175.06 -0.43 -12.53 16 6 C 0.24 5.57 4.60 -5.19 -0.02 5.55 16 7 C -0.54 -13.96 8.73 -34.44 -0.30 -14.26 16 8 H 0.06 1.59 7.81 -52.49 -0.41 1.18 16 9 C 0.07 1.77 5.46 -17.82 -0.10 1.67 16 10 N -0.89 -24.24 13.29 55.43 0.74 -23.50 16 11 Si 0.89 20.57 29.54 -169.99 -5.02 15.55 16 12 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 13 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 14 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 15 C 0.53 10.99 6.78 -10.99 -0.07 10.91 16 16 O -0.56 -12.46 15.20 5.56 0.08 -12.38 16 17 C -0.10 -1.93 2.48 -91.56 -0.23 -2.16 16 18 H 0.14 2.92 6.82 -51.93 -0.35 2.57 16 19 C 0.07 1.27 7.07 38.06 0.27 1.54 16 20 O -0.30 -5.51 11.10 -20.17 -0.22 -5.73 16 21 C 0.10 1.86 7.04 -38.96 -0.27 1.58 16 22 C -0.14 -2.17 9.71 -39.30 -0.38 -2.55 16 23 C -0.06 -0.83 5.87 -104.72 -0.61 -1.45 16 24 C -0.11 -1.10 9.59 36.00 0.35 -0.75 16 25 C -0.12 -1.80 5.89 -104.56 -0.62 -2.42 16 26 C -0.11 -1.21 9.61 36.01 0.35 -0.87 16 27 C -0.04 -0.71 8.92 -39.72 -0.35 -1.06 16 28 C -0.14 -2.60 5.30 -104.10 -0.55 -3.15 16 29 H 0.08 1.00 8.14 -51.93 -0.42 0.57 16 30 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 33 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.09 1.59 8.07 -51.93 -0.42 1.17 16 35 H 0.09 1.54 7.35 -51.93 -0.38 1.15 16 36 H 0.05 1.31 7.24 -51.92 -0.38 0.93 16 37 H 0.03 0.77 5.59 -51.93 -0.29 0.48 16 38 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 39 H 0.07 1.24 7.91 -51.92 -0.41 0.83 16 40 H 0.12 2.02 7.27 -51.93 -0.38 1.64 16 41 H 0.12 1.61 8.06 -52.49 -0.42 1.19 16 42 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 43 H 0.06 0.56 8.08 -51.93 -0.42 0.14 16 44 H 0.07 0.61 5.94 -51.93 -0.31 0.30 16 45 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 46 H 0.07 0.63 5.94 -51.93 -0.31 0.32 16 47 H 0.06 0.72 8.09 -51.93 -0.42 0.30 16 48 H 0.12 2.18 8.06 -52.48 -0.42 1.76 16 LS Contribution 390.21 15.07 5.88 5.88 Total: -1.00 -30.21 390.21 -7.96 -38.17 By element: Atomic # 1 Polarization: 11.46 SS G_CDS: -7.42 Total: 4.05 kcal Atomic # 6 Polarization: -1.51 SS G_CDS: -1.23 Total: -2.74 kcal Atomic # 7 Polarization: -36.34 SS G_CDS: 0.31 Total: -36.03 kcal Atomic # 8 Polarization: -24.39 SS G_CDS: -0.48 Total: -24.87 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.55 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -30.21 -7.96 -38.17 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000613772633.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.384 kcal (2) G-P(sol) polarization free energy of solvation -30.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.171 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds