Wall clock time and date at job start Tue Mar 31 2020 17:07:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42906 * 113.99773 * 2 1 4 4 C 1.52998 * 109.46741 * 179.97438 * 3 2 1 5 5 N 1.46498 * 109.47422 * 65.00328 * 4 3 2 6 6 C 1.46501 * 119.99902 * 269.99771 * 5 4 3 7 7 C 1.50700 * 109.47270 * 264.38033 * 6 5 4 8 8 H 1.08002 * 119.99616 * 359.97438 * 7 6 5 9 9 C 1.37877 * 119.99911 * 179.97438 * 7 6 5 10 10 N 1.31512 * 120.00311 * 359.97438 * 9 7 6 11 11 Si 1.86803 * 119.99833 * 179.97438 * 9 7 6 12 12 H 1.48502 * 109.47039 * 0.02562 * 11 9 7 13 13 H 1.48494 * 109.46945 * 119.99977 * 11 9 7 14 14 H 1.48503 * 109.47249 * 240.00106 * 11 9 7 15 15 C 1.34779 * 120.00380 * 89.99637 * 5 4 3 16 16 O 1.21277 * 119.99502 * 5.75234 * 15 5 4 17 17 C 1.50698 * 120.00038 * 185.75418 * 15 5 4 18 18 H 1.08997 * 110.86552 * 316.64747 * 17 15 5 19 19 C 1.54706 * 110.94302 * 80.38562 * 17 15 5 20 20 O 1.43762 * 102.80079 * 143.50713 * 19 17 15 21 21 C 1.36137 * 109.28465 * 332.45794 * 20 19 17 22 22 C 1.39287 * 129.87653 * 198.58502 * 21 20 19 23 23 C 1.37936 * 120.24239 * 180.42298 * 22 21 20 24 24 C 1.50698 * 119.82661 * 179.97438 * 23 22 21 25 25 C 1.38286 * 120.35004 * 359.93977 * 23 22 21 26 26 C 1.50702 * 120.11670 * 179.86590 * 25 23 22 27 27 C 1.38347 * 119.76519 * 359.83874 * 25 23 22 28 28 C 1.37738 * 119.97766 * 0.02562 * 27 25 23 29 29 H 1.08999 * 109.47292 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47360 * 300.00295 * 1 2 3 31 31 H 1.09004 * 109.47255 * 59.99766 * 1 2 3 32 32 H 1.08993 * 109.46968 * 59.99758 * 3 2 1 33 33 H 1.09003 * 109.46817 * 299.99829 * 3 2 1 34 34 H 1.09000 * 109.47446 * 304.99580 * 4 3 2 35 35 H 1.09007 * 109.46779 * 185.00161 * 4 3 2 36 36 H 1.09007 * 109.47068 * 24.38019 * 6 5 4 37 37 H 1.08999 * 109.47272 * 144.37566 * 6 5 4 38 38 H 0.96996 * 120.00038 * 180.02562 * 10 9 7 39 39 H 1.09008 * 110.74703 * 25.17894 * 19 17 15 40 40 H 1.09002 * 110.75280 * 261.83358 * 19 17 15 41 41 H 1.07999 * 119.88605 * 0.37539 * 22 21 20 42 42 H 1.09001 * 109.47525 * 269.98326 * 24 23 22 43 43 H 1.08999 * 109.46989 * 29.98031 * 24 23 22 44 44 H 1.09000 * 109.47214 * 149.97686 * 24 23 22 45 45 H 1.08998 * 109.47276 * 269.97334 * 26 25 23 46 46 H 1.09000 * 109.46979 * 29.97498 * 26 25 23 47 47 H 1.09003 * 109.46993 * 149.97502 * 26 25 23 48 48 H 1.08006 * 120.01462 * 179.97438 * 27 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 7 3.9766 0.5641 -1.2509 6 6 4.1063 -0.8924 -1.3403 7 6 5.5365 -1.2867 -1.0755 8 1 6.2751 -0.5281 -0.8624 9 6 5.9020 -2.6158 -1.1054 10 7 5.0025 -3.5396 -1.3644 11 14 7.6750 -3.1044 -0.7779 12 1 8.4833 -1.8869 -0.5139 13 1 7.7310 -4.0012 0.4043 14 1 8.2201 -3.8135 -1.9634 15 6 4.2633 1.3330 -2.3200 16 8 4.2573 2.5414 -2.2169 17 6 4.5914 0.6912 -3.6435 18 1 5.2643 -0.1555 -3.5082 19 6 3.3029 0.2607 -4.3837 20 8 3.6233 0.5241 -5.7602 21 6 4.5385 1.5299 -5.8243 22 6 4.8875 2.3530 -6.8924 23 6 5.8621 3.3167 -6.7373 24 6 6.2327 4.2017 -7.8993 25 6 6.5004 3.4755 -5.5209 26 6 7.5666 4.5280 -5.3581 27 6 6.1563 2.6651 -4.4537 28 6 5.1814 1.7040 -4.6057 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 1.6885 1.8464 0.8899 33 1 1.6885 1.8464 -0.8900 34 1 3.8507 0.5686 0.8427 35 1 3.9783 2.1766 0.0902 36 1 3.4573 -1.3611 -0.6004 37 1 3.8171 -1.2224 -2.3381 38 1 5.2596 -4.4746 -1.3850 39 1 2.4534 0.8637 -4.0628 40 1 3.1051 -0.8001 -4.2296 41 1 4.3938 2.2358 -7.8458 42 1 7.0387 3.7371 -8.4674 43 1 5.3646 4.3368 -8.5445 44 1 6.5629 5.1714 -7.5267 45 1 8.5389 4.1016 -5.6049 46 1 7.3566 5.3641 -6.0253 47 1 7.5754 4.8798 -4.3264 48 1 6.6526 2.7853 -3.5020 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000613772633.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:07:19 Heat of formation + Delta-G solvation = -107.450169 kcal Electronic energy + Delta-G solvation = -29843.701758 eV Core-core repulsion = 25863.440457 eV Total energy + Delta-G solvation = -3980.261301 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.50975 -40.53934 -39.12680 -38.70531 -36.70143 -34.67232 -34.26588 -32.96533 -32.33758 -30.93213 -28.90471 -27.89739 -27.27940 -27.14339 -25.30433 -24.65963 -23.50719 -23.01038 -21.55241 -19.97844 -18.80743 -18.36158 -18.07552 -17.61887 -17.36091 -17.19603 -16.67146 -16.53075 -16.18794 -16.02787 -15.60756 -15.30480 -15.16451 -14.95319 -14.69191 -14.46892 -14.12264 -13.96366 -13.62568 -13.52528 -13.49921 -13.28335 -13.13346 -12.97340 -12.90804 -12.84069 -12.77350 -12.69906 -12.59328 -12.18738 -12.13129 -11.94817 -11.72220 -11.67271 -11.53411 -10.87341 -10.64532 -10.53299 -9.69418 -9.51068 -8.95462 -8.21336 -6.35832 0.27820 0.38638 1.37403 1.40293 1.49618 1.56246 2.11211 2.23046 2.40235 2.71807 2.90919 3.09133 3.30909 3.51686 3.65296 3.86815 3.98192 4.00189 4.11509 4.16990 4.29004 4.30312 4.33307 4.37311 4.47729 4.51951 4.54939 4.60994 4.65658 4.74871 4.77990 4.81444 4.84303 4.85820 4.97109 4.98702 5.05372 5.15495 5.25421 5.27386 5.35225 5.46085 5.61957 5.65812 5.73890 5.82899 6.05998 6.18389 6.25713 6.50228 6.78626 7.20490 7.36867 8.84212 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.009262 B = 0.004446 C = 0.003589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3022.496075 B = 6296.109935 C = 7799.951822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.408 6.408 3 C 0.056 3.944 4 C 0.114 3.886 5 N -0.588 5.588 6 C 0.260 3.740 7 C -0.551 4.551 8 H 0.049 0.951 9 C 0.026 3.974 10 N -0.914 5.914 11 Si 0.952 3.048 12 H -0.273 1.273 13 H -0.276 1.276 14 H -0.278 1.278 15 C 0.530 3.470 16 O -0.579 6.579 17 C -0.098 4.098 18 H 0.110 0.890 19 C 0.079 3.921 20 O -0.310 6.310 21 C 0.079 3.921 22 C -0.141 4.141 23 C -0.054 4.054 24 C -0.110 4.110 25 C -0.121 4.121 26 C -0.106 4.106 27 C -0.063 4.063 28 C -0.167 4.167 29 H 0.090 0.910 30 H 0.057 0.943 31 H 0.042 0.958 32 H 0.084 0.916 33 H 0.040 0.960 34 H 0.082 0.918 35 H 0.094 0.906 36 H 0.032 0.968 37 H 0.024 0.976 38 H 0.268 0.732 39 H 0.078 0.922 40 H 0.121 0.879 41 H 0.148 0.852 42 H 0.087 0.913 43 H 0.079 0.921 44 H 0.088 0.912 45 H 0.080 0.920 46 H 0.093 0.907 47 H 0.060 0.940 48 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.492 13.034 -7.270 15.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.328 6.328 3 C -0.021 4.021 4 C -0.009 4.009 5 N -0.317 5.317 6 C 0.139 3.861 7 C -0.590 4.590 8 H 0.067 0.933 9 C -0.175 4.175 10 N -0.553 5.553 11 Si 0.777 3.223 12 H -0.197 1.197 13 H -0.201 1.201 14 H -0.203 1.203 15 C 0.318 3.682 16 O -0.460 6.460 17 C -0.119 4.119 18 H 0.128 0.872 19 C 0.004 3.996 20 O -0.224 6.224 21 C 0.034 3.966 22 C -0.160 4.160 23 C -0.055 4.055 24 C -0.166 4.166 25 C -0.121 4.121 26 C -0.162 4.162 27 C -0.081 4.081 28 C -0.168 4.168 29 H 0.108 0.892 30 H 0.076 0.924 31 H 0.061 0.939 32 H 0.102 0.898 33 H 0.058 0.942 34 H 0.101 0.899 35 H 0.112 0.888 36 H 0.050 0.950 37 H 0.042 0.958 38 H 0.077 0.923 39 H 0.096 0.904 40 H 0.139 0.861 41 H 0.166 0.834 42 H 0.105 0.895 43 H 0.098 0.902 44 H 0.106 0.894 45 H 0.098 0.902 46 H 0.111 0.889 47 H 0.079 0.921 48 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -2.542 13.143 -7.368 15.280 hybrid contribution 0.493 -0.952 0.962 1.440 sum -2.049 12.191 -6.406 13.924 Atomic orbital electron populations 1.22881 0.79924 1.03421 1.00644 1.88005 1.21195 1.28090 1.95484 1.22922 0.93333 0.84885 1.00961 1.21550 0.93054 0.99576 0.86749 1.48129 1.63589 1.09069 1.10934 1.19082 0.95578 0.73987 0.97463 1.21731 0.95322 0.92441 1.49457 0.93315 1.25587 1.01113 0.96282 0.94552 1.70013 1.35077 1.01280 1.48936 0.85603 0.80389 0.78217 0.78074 1.19738 1.20111 1.20344 1.20060 0.76192 0.86388 0.85590 1.90571 1.55171 1.14809 1.85491 1.21438 0.99098 0.98625 0.92727 0.87173 1.23662 0.94932 1.03365 0.77633 1.86758 1.58182 1.49719 1.27739 1.19834 0.91012 0.90075 0.95660 1.20363 1.01842 0.95912 0.97867 1.19850 0.93948 0.95740 0.95918 1.20926 1.03030 0.98422 0.94202 1.19974 1.00387 0.99324 0.92460 1.20820 0.95989 0.96388 1.03024 1.20246 0.95358 0.93659 0.98844 1.20419 1.01302 1.00328 0.94740 0.89188 0.92415 0.93932 0.89821 0.94192 0.89928 0.88805 0.94975 0.95770 0.92301 0.90352 0.86129 0.83405 0.89488 0.90190 0.89382 0.90154 0.88854 0.92123 0.87319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.68 11.01 113.37 1.25 1.92 16 2 O -0.41 -14.00 9.63 -148.98 -1.44 -15.43 16 3 C 0.06 1.76 6.28 71.98 0.45 2.21 16 4 C 0.11 4.16 5.83 86.38 0.50 4.66 16 5 N -0.59 -25.26 2.43 -826.15 -2.01 -27.27 16 6 C 0.26 12.66 4.60 85.63 0.39 13.06 16 7 C -0.55 -29.31 8.73 25.60 0.22 -29.08 16 8 H 0.05 2.66 7.81 -2.91 -0.02 2.63 16 9 C 0.03 1.37 5.46 84.65 0.46 1.83 16 10 N -0.91 -50.91 13.29 21.45 0.28 -50.63 16 11 Si 0.95 42.72 29.54 68.60 2.03 44.75 16 12 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 13 H -0.28 -12.03 7.11 99.48 0.71 -11.33 16 14 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 15 C 0.53 22.94 6.78 87.66 0.59 23.53 16 16 O -0.58 -26.31 15.20 -3.02 -0.05 -26.35 16 17 C -0.10 -4.05 2.48 -11.40 -0.03 -4.08 16 18 H 0.11 5.07 6.82 -2.39 -0.02 5.05 16 19 C 0.08 2.94 7.07 72.56 0.51 3.45 16 20 O -0.31 -11.51 11.10 -95.10 -1.06 -12.57 16 21 C 0.08 2.85 7.04 22.68 0.16 3.01 16 22 C -0.14 -4.09 9.71 22.45 0.22 -3.87 16 23 C -0.05 -1.37 5.87 -19.93 -0.12 -1.48 16 24 C -0.11 -1.67 9.59 71.24 0.68 -0.99 16 25 C -0.12 -3.41 5.89 -19.83 -0.12 -3.52 16 26 C -0.11 -2.12 9.61 71.24 0.68 -1.44 16 27 C -0.06 -2.25 8.92 22.18 0.20 -2.06 16 28 C -0.17 -6.52 5.30 -19.53 -0.10 -6.62 16 29 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 30 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 31 H 0.04 0.97 8.14 -2.38 -0.02 0.96 16 32 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 33 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 34 H 0.08 3.07 8.07 -2.39 -0.02 3.05 16 35 H 0.09 3.30 7.35 -2.38 -0.02 3.29 16 36 H 0.03 1.70 7.24 -2.38 -0.02 1.68 16 37 H 0.02 1.22 5.59 -2.39 -0.01 1.20 16 38 H 0.27 14.10 8.31 -92.71 -0.77 13.33 16 39 H 0.08 2.77 7.91 -2.38 -0.02 2.75 16 40 H 0.12 4.33 7.27 -2.39 -0.02 4.31 16 41 H 0.15 3.46 8.06 -2.91 -0.02 3.44 16 42 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 43 H 0.08 1.02 8.08 -2.39 -0.02 1.00 16 44 H 0.09 1.07 5.94 -2.39 -0.01 1.06 16 45 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 46 H 0.09 1.37 5.94 -2.39 -0.01 1.36 16 47 H 0.06 1.27 8.09 -2.39 -0.02 1.25 16 48 H 0.11 4.07 8.06 -2.91 -0.02 4.04 16 Total: -1.00 -66.59 390.21 4.69 -61.90 By element: Atomic # 1 Polarization: 24.12 SS G_CDS: 0.96 Total: 25.07 kcal Atomic # 6 Polarization: -5.44 SS G_CDS: 5.97 Total: 0.53 kcal Atomic # 7 Polarization: -76.17 SS G_CDS: -1.73 Total: -77.90 kcal Atomic # 8 Polarization: -51.82 SS G_CDS: -2.54 Total: -54.36 kcal Atomic # 14 Polarization: 42.72 SS G_CDS: 2.03 Total: 44.75 kcal Total: -66.59 4.69 -61.90 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000613772633.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.550 kcal (2) G-P(sol) polarization free energy of solvation -66.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.900 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds