Wall clock time and date at job start Tue Mar 31 2020 18:00:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.35246 * 126.07151 * 2 1 4 4 C 1.40402 * 107.86566 * 180.13799 * 3 2 1 5 5 N 1.40195 * 125.97023 * 179.82647 * 4 3 2 6 6 C 1.34771 * 120.00321 * 359.71621 * 5 4 3 7 7 O 1.21598 * 119.99756 * 0.02562 * 6 5 4 8 8 N 1.34778 * 120.00430 * 179.97438 * 6 5 4 9 9 C 1.46494 * 120.00188 * 180.02562 * 8 6 5 10 10 H 1.09000 * 109.47647 * 35.00119 * 9 8 6 11 11 C 1.53000 * 109.47202 * 275.00197 * 9 8 6 12 12 C 1.50699 * 109.47267 * 154.99976 * 9 8 6 13 13 N 1.33251 * 125.52327 * 45.32120 * 12 9 8 14 14 C 1.30831 * 109.82578 * 180.12916 * 13 12 9 15 15 N 1.34438 * 108.07816 * 359.59820 * 14 13 12 16 16 C 1.46494 * 126.82245 * 180.20890 * 15 14 13 17 17 N 1.30712 * 125.53061 * 224.99664 * 12 9 8 18 18 N 1.31205 * 108.05608 * 359.56784 * 4 3 2 19 19 N 1.34964 * 126.07134 * 179.65760 * 2 1 3 20 20 C 1.46508 * 125.97368 * 359.97438 * 19 2 1 21 21 C 1.50699 * 109.46609 * 269.99939 * 20 19 2 22 22 H 1.07996 * 120.00391 * 359.97438 * 21 20 19 23 23 C 1.37882 * 119.99538 * 180.02562 * 21 20 19 24 24 N 1.31513 * 120.00279 * 359.97438 * 23 21 20 25 25 Si 1.86802 * 119.99737 * 179.97438 * 23 21 20 26 26 H 1.48491 * 109.47324 * 0.02562 * 25 23 21 27 27 H 1.48509 * 109.46939 * 120.00030 * 25 23 21 28 28 H 1.48496 * 109.47314 * 239.99691 * 25 23 21 29 29 H 1.09002 * 109.47138 * 270.34628 * 1 2 3 30 30 H 1.08999 * 109.47191 * 30.34170 * 1 2 3 31 31 H 1.08995 * 109.47641 * 150.34095 * 1 2 3 32 32 H 1.08000 * 126.06532 * 359.96504 * 3 2 1 33 33 H 0.97001 * 119.99951 * 179.71681 * 5 4 3 34 34 H 0.97001 * 119.99842 * 0.02562 * 8 6 5 35 35 H 1.09003 * 109.47216 * 300.00235 * 11 9 8 36 36 H 1.08999 * 109.47316 * 59.99792 * 11 9 8 37 37 H 1.08996 * 109.47377 * 180.02562 * 11 9 8 38 38 H 1.08002 * 125.96273 * 179.86887 * 14 13 12 39 39 H 1.09000 * 109.47284 * 90.02473 * 16 15 14 40 40 H 1.09003 * 109.47324 * 210.02914 * 16 15 14 41 41 H 1.09004 * 109.47280 * 330.02502 * 16 15 14 42 42 H 1.08996 * 109.46913 * 29.99854 * 20 19 2 43 43 H 1.08998 * 109.47030 * 149.99822 * 20 19 2 44 44 H 0.96993 * 120.00449 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3033 1.0932 0.0000 4 6 3.6370 0.6545 -0.0032 5 7 4.7737 1.4751 -0.0077 6 6 4.6370 2.8158 -0.0150 7 8 3.5277 3.3138 -0.0173 8 7 5.7298 3.6047 -0.0188 9 6 5.5812 5.0620 -0.0262 10 1 4.7067 5.3412 0.5616 11 6 5.4046 5.5494 -1.4658 12 6 6.8111 5.6955 0.5712 13 7 8.0695 5.3592 0.2902 14 6 8.8929 6.1028 0.9836 15 7 8.1627 6.9506 1.7287 16 6 8.6702 7.9669 2.6537 17 7 6.8167 6.6680 1.4447 18 7 3.6336 -0.6575 0.0043 19 7 2.3016 -1.0909 0.0065 20 6 1.8500 -2.4846 0.0154 21 6 1.6957 -2.9535 1.4392 22 1 1.9127 -2.2808 2.2558 23 6 1.2784 -4.2416 1.6994 24 7 1.0145 -5.0609 0.7050 25 14 1.0878 -4.8231 3.4643 26 1 1.4435 -3.7184 4.3906 27 1 -0.3198 -5.2332 3.7011 28 1 1.9874 -5.9799 3.7043 29 1 -0.3633 0.0062 1.0277 30 1 -0.3633 0.8869 -0.5191 31 1 -0.3634 -0.8930 -0.5085 32 1 1.9720 2.1211 -0.0005 33 1 5.6586 1.0778 -0.0055 34 1 6.6147 3.2074 -0.0167 35 1 6.2790 5.2703 -2.0537 36 1 4.5150 5.0912 -1.8979 37 1 5.2944 6.6338 -1.4714 38 1 9.9712 6.0483 0.9582 39 1 8.8133 8.9059 2.1190 40 1 7.9528 8.1141 3.4611 41 1 9.6222 7.6368 3.0695 42 1 0.8912 -2.5590 -0.4976 43 1 2.5844 -3.1077 -0.4949 44 1 0.7214 -5.9671 0.8880 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000614932900.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:00:40 Heat of formation + Delta-G solvation = 146.880112 kcal Electronic energy + Delta-G solvation = -27394.862659 eV Core-core repulsion = 23386.675105 eV Total energy + Delta-G solvation = -4008.187554 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.165 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.55460 -40.69664 -39.60428 -36.28105 -34.66800 -34.05092 -33.33177 -31.98745 -31.37286 -30.84518 -30.03970 -27.62460 -26.57295 -26.24477 -24.40524 -23.02953 -22.58958 -21.62846 -20.48575 -19.80635 -19.49510 -17.99273 -17.27817 -16.63928 -16.49583 -16.30660 -15.69570 -15.42344 -15.30280 -14.84673 -14.53053 -14.26813 -14.05389 -13.89348 -13.80981 -13.54749 -13.02695 -12.93381 -12.43313 -12.33492 -12.22028 -12.18052 -12.12458 -11.63932 -11.53762 -11.33999 -11.04321 -10.81039 -10.47362 -10.37234 -10.25074 -10.20965 -10.03699 -9.92414 -9.59032 -9.47089 -9.23730 -8.60765 -7.83828 -7.33072 -6.21347 -4.28498 1.14073 1.79763 2.27387 2.62541 2.73399 3.16291 3.22986 3.30772 3.37162 3.59626 3.66060 3.91745 3.99793 4.27317 4.31150 4.41612 4.55300 4.73803 4.83520 5.00856 5.12277 5.15940 5.41810 5.50356 5.70123 5.74499 5.79255 5.89906 5.99747 6.05266 6.18184 6.27529 6.30183 6.35182 6.52946 6.67914 6.69830 7.01259 7.11705 7.22259 7.60207 7.63904 7.72123 7.94056 8.02806 8.13994 8.65802 8.74290 8.82083 9.37552 10.85808 Molecular weight = 333.17amu Principal moments of inertia in cm(-1) A = 0.019855 B = 0.002086 C = 0.001986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1409.871675 B =13416.826542 C =14091.996232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.090 3.910 3 C -0.288 4.288 4 C 0.283 3.717 5 N -0.642 5.642 6 C 0.717 3.283 7 O -0.565 6.565 8 N -0.734 5.734 9 C 0.263 3.737 10 H 0.113 0.887 11 C -0.157 4.157 12 C 0.218 3.782 13 N -0.536 5.536 14 C 0.256 3.744 15 N -0.384 5.384 16 C 0.096 3.904 17 N -0.303 5.303 18 N -0.324 5.324 19 N -0.319 5.319 20 C 0.259 3.741 21 C -0.533 4.533 22 H 0.065 0.935 23 C 0.064 3.936 24 N -0.892 5.892 25 Si 0.905 3.095 26 H -0.272 1.272 27 H -0.281 1.281 28 H -0.281 1.281 29 H 0.076 0.924 30 H 0.073 0.927 31 H 0.072 0.928 32 H 0.161 0.839 33 H 0.407 0.593 34 H 0.404 0.596 35 H 0.065 0.935 36 H 0.078 0.922 37 H 0.066 0.934 38 H 0.221 0.779 39 H 0.081 0.919 40 H 0.093 0.907 41 H 0.094 0.906 42 H 0.054 0.946 43 H 0.052 0.948 44 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.514 25.282 -0.334 29.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.041 4.041 3 C -0.320 4.320 4 C 0.030 3.970 5 N -0.292 5.292 6 C 0.417 3.583 7 O -0.440 6.440 8 N -0.392 5.392 9 C 0.155 3.845 10 H 0.131 0.869 11 C -0.216 4.216 12 C -0.065 4.065 13 N -0.263 5.263 14 C -0.041 4.041 15 N -0.175 5.175 16 C -0.046 4.046 17 N -0.131 5.131 18 N -0.155 5.155 19 N -0.101 5.101 20 C 0.141 3.859 21 C -0.572 4.572 22 H 0.083 0.917 23 C -0.139 4.139 24 N -0.530 5.530 25 Si 0.733 3.267 26 H -0.196 1.196 27 H -0.207 1.207 28 H -0.207 1.207 29 H 0.095 0.905 30 H 0.092 0.908 31 H 0.091 0.909 32 H 0.178 0.822 33 H 0.241 0.759 34 H 0.239 0.761 35 H 0.084 0.916 36 H 0.097 0.903 37 H 0.085 0.915 38 H 0.238 0.762 39 H 0.100 0.900 40 H 0.112 0.888 41 H 0.113 0.887 42 H 0.072 0.928 43 H 0.070 0.930 44 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 14.614 24.556 -0.240 28.576 hybrid contribution 0.960 -0.030 1.170 1.513 sum 15.574 24.526 0.929 29.068 Atomic orbital electron populations 1.20320 0.87968 1.02763 1.03094 1.21054 0.94860 0.87191 1.01041 1.21240 0.89667 0.99834 1.21214 1.18646 0.86518 0.89229 1.02613 1.41347 1.07676 1.03614 1.76551 1.15512 0.84493 0.80430 0.77903 1.90875 1.23389 1.73414 1.56366 1.44904 1.08325 1.05215 1.80709 1.18748 0.90961 0.77960 0.96849 0.86949 1.22163 1.03526 1.01401 0.94534 1.24239 0.93948 0.93979 0.94315 1.70336 1.00077 1.28718 1.27206 1.26079 1.00129 0.88147 0.89710 1.50426 1.04207 1.28935 1.33882 1.21993 1.00474 0.89614 0.92546 1.78082 0.95602 1.19853 1.19575 1.77248 0.99900 1.08348 1.29969 1.48946 1.00904 1.07704 1.52564 1.19671 0.95944 0.71448 0.98857 1.21375 1.46421 0.97914 0.91451 0.91715 1.24931 0.94770 0.96084 0.98090 1.69927 1.45168 1.06876 1.31071 0.86311 0.77824 0.78751 0.83857 1.19603 1.20674 1.20702 0.90501 0.90835 0.90937 0.82157 0.75856 0.76095 0.91600 0.90303 0.91546 0.76233 0.90035 0.88815 0.88706 0.92812 0.93048 0.92364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.47 10.11 36.00 0.36 -1.10 16 2 C 0.09 1.95 6.92 -82.28 -0.57 1.38 16 3 C -0.29 -6.14 9.52 -39.83 -0.38 -6.52 16 4 C 0.28 5.98 8.11 -154.37 -1.25 4.73 16 5 N -0.64 -10.59 5.45 -15.51 -0.08 -10.68 16 6 C 0.72 11.25 8.50 -86.92 -0.74 10.51 16 7 O -0.57 -10.49 13.13 5.28 0.07 -10.42 16 8 N -0.73 -8.78 5.07 -59.82 -0.30 -9.08 16 9 C 0.26 2.99 3.12 -69.09 -0.22 2.78 16 10 H 0.11 1.43 7.58 -51.93 -0.39 1.03 16 11 C -0.16 -1.57 9.47 37.16 0.35 -1.22 16 12 C 0.22 2.40 6.93 -156.85 -1.09 1.31 16 13 N -0.54 -5.21 10.87 -11.97 -0.13 -5.34 16 14 C 0.26 1.65 12.66 -90.65 -1.15 0.50 16 15 N -0.38 -2.74 4.04 -69.44 -0.28 -3.02 16 16 C 0.10 0.23 11.53 59.84 0.69 0.92 16 17 N -0.30 -3.32 12.70 32.42 0.41 -2.91 16 18 N -0.32 -7.69 12.59 31.44 0.40 -7.29 16 19 N -0.32 -7.75 3.59 -58.33 -0.21 -7.96 16 20 C 0.26 6.75 5.99 -5.19 -0.03 6.72 16 21 C -0.53 -14.93 9.39 -34.44 -0.32 -15.26 16 22 H 0.06 1.88 7.81 -52.49 -0.41 1.47 16 23 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 24 N -0.89 -25.36 13.29 55.43 0.74 -24.63 16 25 Si 0.91 21.42 29.54 -169.99 -5.02 16.40 16 26 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 27 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 28 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 29 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 30 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 31 H 0.07 1.28 7.07 -51.93 -0.37 0.91 16 32 H 0.16 3.34 5.91 -52.49 -0.31 3.03 16 33 H 0.41 5.50 8.84 -40.82 -0.36 5.14 16 34 H 0.40 4.16 8.35 -40.82 -0.34 3.82 16 35 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 36 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.22 0.31 8.06 -52.49 -0.42 -0.11 16 39 H 0.08 0.09 8.14 -51.93 -0.42 -0.33 16 40 H 0.09 0.26 8.14 -51.93 -0.42 -0.17 16 41 H 0.09 -0.05 8.14 -51.93 -0.42 -0.47 16 42 H 0.05 1.39 7.04 -51.93 -0.37 1.02 16 43 H 0.05 1.43 8.14 -51.93 -0.42 1.00 16 44 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 LS Contribution 381.54 15.07 5.75 5.75 Total: -1.00 -36.54 381.54 -9.01 -45.55 By element: Atomic # 1 Polarization: 13.11 SS G_CDS: -5.91 Total: 7.20 kcal Atomic # 6 Polarization: 10.86 SS G_CDS: -4.44 Total: 6.43 kcal Atomic # 7 Polarization: -71.44 SS G_CDS: 0.54 Total: -70.91 kcal Atomic # 8 Polarization: -10.49 SS G_CDS: 0.07 Total: -10.42 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -36.54 -9.01 -45.55 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000614932900.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 192.428 kcal (2) G-P(sol) polarization free energy of solvation -36.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 155.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.548 kcal (6) G-S(sol) free energy of system = (1) + (5) 146.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds