Wall clock time and date at job start Tue Mar 31 2020 18:00:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.35246 * 126.07151 * 2 1 4 4 C 1.40402 * 107.86566 * 180.13799 * 3 2 1 5 5 N 1.40195 * 125.97023 * 179.82647 * 4 3 2 6 6 C 1.34771 * 120.00321 * 359.71621 * 5 4 3 7 7 O 1.21598 * 119.99756 * 0.02562 * 6 5 4 8 8 N 1.34778 * 120.00430 * 179.97438 * 6 5 4 9 9 C 1.46494 * 120.00188 * 180.02562 * 8 6 5 10 10 H 1.09000 * 109.47647 * 35.00119 * 9 8 6 11 11 C 1.53000 * 109.47202 * 275.00197 * 9 8 6 12 12 C 1.50699 * 109.47267 * 154.99976 * 9 8 6 13 13 N 1.33251 * 125.52327 * 45.32120 * 12 9 8 14 14 C 1.30831 * 109.82578 * 180.12916 * 13 12 9 15 15 N 1.34438 * 108.07816 * 359.59820 * 14 13 12 16 16 C 1.46494 * 126.82245 * 180.20890 * 15 14 13 17 17 N 1.30712 * 125.53061 * 224.99664 * 12 9 8 18 18 N 1.31205 * 108.05608 * 359.56784 * 4 3 2 19 19 N 1.34964 * 126.07134 * 179.65760 * 2 1 3 20 20 C 1.46508 * 125.97368 * 359.97438 * 19 2 1 21 21 C 1.50699 * 109.46609 * 269.99939 * 20 19 2 22 22 H 1.07996 * 120.00391 * 359.97438 * 21 20 19 23 23 C 1.37882 * 119.99538 * 180.02562 * 21 20 19 24 24 N 1.31513 * 120.00279 * 359.97438 * 23 21 20 25 25 Si 1.86802 * 119.99737 * 179.97438 * 23 21 20 26 26 H 1.48491 * 109.47324 * 0.02562 * 25 23 21 27 27 H 1.48509 * 109.46939 * 120.00030 * 25 23 21 28 28 H 1.48496 * 109.47314 * 239.99691 * 25 23 21 29 29 H 1.09002 * 109.47138 * 270.34628 * 1 2 3 30 30 H 1.08999 * 109.47191 * 30.34170 * 1 2 3 31 31 H 1.08995 * 109.47641 * 150.34095 * 1 2 3 32 32 H 1.08000 * 126.06532 * 359.96504 * 3 2 1 33 33 H 0.97001 * 119.99951 * 179.71681 * 5 4 3 34 34 H 0.97001 * 119.99842 * 0.02562 * 8 6 5 35 35 H 1.09003 * 109.47216 * 300.00235 * 11 9 8 36 36 H 1.08999 * 109.47316 * 59.99792 * 11 9 8 37 37 H 1.08996 * 109.47377 * 180.02562 * 11 9 8 38 38 H 1.08002 * 125.96273 * 179.86887 * 14 13 12 39 39 H 1.09000 * 109.47284 * 90.02473 * 16 15 14 40 40 H 1.09003 * 109.47324 * 210.02914 * 16 15 14 41 41 H 1.09004 * 109.47280 * 330.02502 * 16 15 14 42 42 H 1.08996 * 109.46913 * 29.99854 * 20 19 2 43 43 H 1.08998 * 109.47030 * 149.99822 * 20 19 2 44 44 H 0.96993 * 120.00449 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3033 1.0932 0.0000 4 6 3.6370 0.6545 -0.0032 5 7 4.7737 1.4751 -0.0077 6 6 4.6370 2.8158 -0.0150 7 8 3.5277 3.3138 -0.0173 8 7 5.7298 3.6047 -0.0188 9 6 5.5812 5.0620 -0.0262 10 1 4.7067 5.3412 0.5616 11 6 5.4046 5.5494 -1.4658 12 6 6.8111 5.6955 0.5712 13 7 8.0695 5.3592 0.2902 14 6 8.8929 6.1028 0.9836 15 7 8.1627 6.9506 1.7287 16 6 8.6702 7.9669 2.6537 17 7 6.8167 6.6680 1.4447 18 7 3.6336 -0.6575 0.0043 19 7 2.3016 -1.0909 0.0065 20 6 1.8500 -2.4846 0.0154 21 6 1.6957 -2.9535 1.4392 22 1 1.9127 -2.2808 2.2558 23 6 1.2784 -4.2416 1.6994 24 7 1.0145 -5.0609 0.7050 25 14 1.0878 -4.8231 3.4643 26 1 1.4435 -3.7184 4.3906 27 1 -0.3198 -5.2332 3.7011 28 1 1.9874 -5.9799 3.7043 29 1 -0.3633 0.0062 1.0277 30 1 -0.3633 0.8869 -0.5191 31 1 -0.3634 -0.8930 -0.5085 32 1 1.9720 2.1211 -0.0005 33 1 5.6586 1.0778 -0.0055 34 1 6.6147 3.2074 -0.0167 35 1 6.2790 5.2703 -2.0537 36 1 4.5150 5.0912 -1.8979 37 1 5.2944 6.6338 -1.4714 38 1 9.9712 6.0483 0.9582 39 1 8.8133 8.9059 2.1190 40 1 7.9528 8.1141 3.4611 41 1 9.6222 7.6368 3.0695 42 1 0.8912 -2.5590 -0.4976 43 1 2.5844 -3.1077 -0.4949 44 1 0.7214 -5.9671 0.8880 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000614932900.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:00:39 Heat of formation + Delta-G solvation = 122.106679 kcal Electronic energy + Delta-G solvation = -27395.936915 eV Core-core repulsion = 23386.675105 eV Total energy + Delta-G solvation = -4009.261810 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.165 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -43.16956 -42.29288 -40.99178 -37.30723 -36.16880 -35.30994 -34.66601 -33.21269 -32.65410 -32.38799 -31.11053 -28.50335 -28.04268 -27.83538 -25.48560 -24.72619 -23.27006 -22.81553 -21.46782 -21.18681 -21.04461 -19.23602 -18.76957 -18.07080 -17.61078 -17.17206 -16.99587 -16.76640 -16.39955 -16.12722 -15.96031 -15.70176 -15.51668 -14.70251 -14.63269 -14.49815 -14.28654 -13.97753 -13.77462 -13.76801 -13.62226 -13.47134 -13.13037 -13.09213 -12.83018 -12.72475 -12.66323 -12.43450 -12.25222 -12.07079 -11.56151 -11.33582 -11.18072 -11.10046 -10.89470 -10.72287 -10.59097 -10.31597 -9.54219 -9.06373 -8.31158 -6.48661 0.52874 1.01532 1.06729 1.37357 1.38872 1.44365 1.51911 1.66706 1.79575 2.12991 2.36342 2.38619 2.95496 2.97976 3.08438 3.54358 3.87590 3.96550 4.12640 4.14975 4.19524 4.44583 4.46953 4.52816 4.63983 4.72552 4.74984 4.77181 4.86251 4.92167 5.00791 5.03994 5.07815 5.15487 5.22039 5.25238 5.26752 5.42346 5.55761 5.82679 5.84221 5.91985 5.99005 6.29862 6.63372 6.72483 7.01752 7.13135 7.22052 7.38238 8.74684 Molecular weight = 333.17amu Principal moments of inertia in cm(-1) A = 0.019855 B = 0.002086 C = 0.001986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1409.871675 B =13416.826542 C =14091.996232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.087 3.913 3 C -0.297 4.297 4 C 0.293 3.707 5 N -0.634 5.634 6 C 0.719 3.281 7 O -0.593 6.593 8 N -0.714 5.714 9 C 0.263 3.737 10 H 0.095 0.905 11 C -0.147 4.147 12 C 0.207 3.793 13 N -0.563 5.563 14 C 0.265 3.735 15 N -0.382 5.382 16 C 0.087 3.913 17 N -0.340 5.340 18 N -0.360 5.360 19 N -0.343 5.343 20 C 0.275 3.725 21 C -0.551 4.551 22 H 0.048 0.952 23 C 0.022 3.978 24 N -0.918 5.918 25 Si 0.972 3.028 26 H -0.275 1.275 27 H -0.267 1.267 28 H -0.274 1.274 29 H 0.083 0.917 30 H 0.106 0.894 31 H 0.069 0.931 32 H 0.168 0.832 33 H 0.421 0.579 34 H 0.415 0.585 35 H 0.070 0.930 36 H 0.065 0.935 37 H 0.077 0.923 38 H 0.270 0.730 39 H 0.096 0.904 40 H 0.086 0.914 41 H 0.130 0.870 42 H 0.053 0.947 43 H 0.025 0.975 44 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.015 26.717 0.659 31.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.044 4.044 3 C -0.328 4.328 4 C 0.038 3.962 5 N -0.286 5.286 6 C 0.418 3.582 7 O -0.471 6.471 8 N -0.371 5.371 9 C 0.155 3.845 10 H 0.113 0.887 11 C -0.206 4.206 12 C -0.076 4.076 13 N -0.291 5.291 14 C -0.030 4.030 15 N -0.173 5.173 16 C -0.053 4.053 17 N -0.170 5.170 18 N -0.190 5.190 19 N -0.126 5.126 20 C 0.156 3.844 21 C -0.589 4.589 22 H 0.066 0.934 23 C -0.179 4.179 24 N -0.556 5.556 25 Si 0.796 3.204 26 H -0.200 1.200 27 H -0.192 1.192 28 H -0.199 1.199 29 H 0.101 0.899 30 H 0.124 0.876 31 H 0.088 0.912 32 H 0.185 0.815 33 H 0.258 0.742 34 H 0.251 0.749 35 H 0.089 0.911 36 H 0.084 0.916 37 H 0.096 0.904 38 H 0.285 0.715 39 H 0.114 0.886 40 H 0.105 0.895 41 H 0.149 0.851 42 H 0.071 0.929 43 H 0.043 0.957 44 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 16.175 26.040 0.754 30.664 hybrid contribution 0.635 -0.294 0.872 1.117 sum 16.810 25.747 1.626 30.791 Atomic orbital electron populations 1.20461 0.85333 1.04214 1.03909 1.21739 0.96653 0.86431 0.99527 1.21413 0.89859 0.99954 1.21549 1.18912 0.87943 0.88885 1.00464 1.41320 1.07210 1.03650 1.76412 1.15591 0.84895 0.80119 0.77594 1.90846 1.24810 1.73777 1.57638 1.44753 1.07760 1.05381 1.79183 1.18723 0.91157 0.77149 0.97473 0.88709 1.22058 1.03027 1.01949 0.93557 1.23968 0.94180 0.94523 0.94924 1.70294 0.99828 1.30260 1.28758 1.27004 1.01664 0.86453 0.87902 1.50701 1.02916 1.29505 1.34151 1.22394 1.01621 0.89454 0.91849 1.77974 0.98451 1.20411 1.20127 1.77168 1.00075 1.09694 1.32100 1.48758 1.01636 1.07480 1.54681 1.19252 0.94964 0.72448 0.97746 1.21464 1.47329 0.98337 0.91783 0.93354 1.25731 0.94017 0.95905 1.02247 1.70004 1.45210 1.07354 1.33037 0.85304 0.78478 0.78043 0.78610 1.19975 1.19165 1.19944 0.89879 0.87565 0.91236 0.81499 0.74209 0.74853 0.91058 0.91626 0.90433 0.71455 0.88565 0.89510 0.85136 0.92909 0.95721 0.91751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.80 10.11 71.23 0.72 -2.08 16 2 C 0.09 3.79 6.92 41.39 0.29 4.08 16 3 C -0.30 -12.68 9.52 22.11 0.21 -12.47 16 4 C 0.29 12.48 8.11 133.31 1.08 13.56 16 5 N -0.63 -20.84 5.45 -321.23 -1.75 -22.60 16 6 C 0.72 22.42 8.50 179.06 1.52 23.94 16 7 O -0.59 -22.13 13.13 -4.02 -0.05 -22.18 16 8 N -0.71 -16.78 5.07 -461.42 -2.34 -19.12 16 9 C 0.26 5.96 3.12 44.25 0.14 6.10 16 10 H 0.09 2.49 7.58 -2.39 -0.02 2.47 16 11 C -0.15 -2.89 9.47 71.98 0.68 -2.21 16 12 C 0.21 4.40 6.93 138.63 0.96 5.37 16 13 N -0.56 -9.98 10.87 -191.79 -2.09 -12.07 16 14 C 0.27 2.66 12.66 180.36 2.28 4.94 16 15 N -0.38 -4.64 4.04 -373.61 -1.51 -6.15 16 16 C 0.09 0.18 11.53 127.77 1.47 1.66 16 17 N -0.34 -7.22 12.70 -51.33 -0.65 -7.87 16 18 N -0.36 -17.47 12.59 -54.44 -0.69 -18.15 16 19 N -0.34 -17.09 3.59 -338.44 -1.22 -18.31 16 20 C 0.27 14.84 5.99 85.63 0.51 15.35 16 21 C -0.55 -31.48 9.39 25.60 0.24 -31.24 16 22 H 0.05 2.87 7.81 -2.91 -0.02 2.84 16 23 C 0.02 1.21 5.46 84.66 0.46 1.68 16 24 N -0.92 -52.40 13.29 21.45 0.28 -52.12 16 25 Si 0.97 43.79 29.54 68.60 2.03 45.82 16 26 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 27 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 28 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 29 H 0.08 2.77 8.14 -2.39 -0.02 2.75 16 30 H 0.11 2.93 8.14 -2.39 -0.02 2.91 16 31 H 0.07 2.43 7.07 -2.39 -0.02 2.42 16 32 H 0.17 6.92 5.91 -2.91 -0.02 6.91 16 33 H 0.42 11.21 8.84 -92.71 -0.82 10.39 16 34 H 0.41 8.16 8.35 -92.71 -0.77 7.39 16 35 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 36 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 37 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 38 H 0.27 -0.47 8.06 -2.91 -0.02 -0.49 16 39 H 0.10 -0.05 8.14 -2.39 -0.02 -0.07 16 40 H 0.09 0.34 8.14 -2.39 -0.02 0.32 16 41 H 0.13 -0.65 8.14 -2.38 -0.02 -0.67 16 42 H 0.05 2.81 7.04 -2.39 -0.02 2.79 16 43 H 0.02 1.44 8.14 -2.39 -0.02 1.42 16 44 H 0.27 14.51 8.31 -92.71 -0.77 13.74 16 Total: -1.00 -80.64 381.54 2.06 -78.59 By element: Atomic # 1 Polarization: 26.03 SS G_CDS: -0.53 Total: 25.50 kcal Atomic # 6 Polarization: 18.09 SS G_CDS: 10.57 Total: 28.66 kcal Atomic # 7 Polarization: -146.43 SS G_CDS: -9.96 Total: -156.38 kcal Atomic # 8 Polarization: -22.13 SS G_CDS: -0.05 Total: -22.18 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 2.03 Total: 45.82 kcal Total: -80.64 2.06 -78.59 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000614932900.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 200.693 kcal (2) G-P(sol) polarization free energy of solvation -80.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 120.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.587 kcal (6) G-S(sol) free energy of system = (1) + (5) 122.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds