Wall clock time and date at job start Tue Mar 31 2020 18:00:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35244 * 126.07226 * 2 1 4 4 C 1.40400 * 107.86833 * 179.90760 * 3 2 1 5 5 N 1.40197 * 125.97326 * 180.14908 * 4 3 2 6 6 C 1.34774 * 119.99701 * 0.22510 * 5 4 3 7 7 O 1.21596 * 120.00529 * 0.02562 * 6 5 4 8 8 N 1.34775 * 119.99859 * 180.02562 * 6 5 4 9 9 C 1.46505 * 120.00267 * 180.02562 * 8 6 5 10 10 H 1.09000 * 109.46347 * 324.99904 * 9 8 6 11 11 C 1.52999 * 109.47246 * 84.99824 * 9 8 6 12 12 C 1.50697 * 109.47130 * 205.00288 * 9 8 6 13 13 N 1.30840 * 125.96207 * 315.01908 * 12 9 8 14 14 C 1.33236 * 109.82873 * 180.02562 * 13 12 9 15 15 N 1.30715 * 108.94810 * 359.97438 * 14 13 12 16 16 N 1.34434 * 125.96300 * 134.71242 * 12 9 8 17 17 C 1.46497 * 126.81986 * 0.02562 * 16 12 9 18 18 N 1.31208 * 108.05420 * 0.35939 * 4 3 2 19 19 N 1.34968 * 126.07013 * 180.31258 * 2 1 3 20 20 C 1.46496 * 125.97468 * 359.94647 * 19 2 1 21 21 C 1.50702 * 109.47635 * 89.99791 * 20 19 2 22 22 H 1.07999 * 119.99790 * 359.97438 * 21 20 19 23 23 C 1.37878 * 119.99972 * 179.97438 * 21 20 19 24 24 N 1.31512 * 120.00160 * 359.97438 * 23 21 20 25 25 Si 1.86805 * 119.99693 * 179.97438 * 23 21 20 26 26 H 1.48507 * 109.46844 * 60.00071 * 25 23 21 27 27 H 1.48494 * 109.46947 * 179.97438 * 25 23 21 28 28 H 1.48493 * 109.47031 * 300.00020 * 25 23 21 29 29 H 1.09002 * 109.47152 * 269.68666 * 1 2 3 30 30 H 1.09001 * 109.46980 * 149.68766 * 1 2 3 31 31 H 1.09004 * 109.47113 * 29.68747 * 1 2 3 32 32 H 1.08001 * 126.06270 * 0.02562 * 3 2 1 33 33 H 0.96995 * 119.99860 * 180.22903 * 5 4 3 34 34 H 0.97005 * 120.00218 * 359.97438 * 8 6 5 35 35 H 1.08997 * 109.47083 * 300.00026 * 11 9 8 36 36 H 1.08995 * 109.46749 * 60.00403 * 11 9 8 37 37 H 1.08997 * 109.46811 * 180.02562 * 11 9 8 38 38 H 1.08000 * 125.52108 * 180.02562 * 14 13 12 39 39 H 1.08999 * 109.46926 * 89.99790 * 17 16 12 40 40 H 1.08999 * 109.46825 * 209.99884 * 17 16 12 41 41 H 1.09002 * 109.47518 * 329.99829 * 17 16 12 42 42 H 1.09001 * 109.47030 * 210.00125 * 20 19 2 43 43 H 1.09005 * 109.47259 * 329.99077 * 20 19 2 44 44 H 0.96997 * 120.00168 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3034 1.0931 0.0000 4 6 3.6371 0.6545 0.0022 5 7 4.7738 1.4751 0.0058 6 6 4.6370 2.8159 0.0121 7 8 3.5277 3.3139 0.0152 8 7 5.7298 3.6047 0.0151 9 6 5.5812 5.0622 0.0226 10 1 4.7063 5.3411 -0.5647 11 6 5.4056 5.5496 1.4622 12 6 6.8107 5.6955 -0.5758 13 7 8.0496 5.3680 -0.3119 14 6 8.8799 6.1337 -1.0187 15 7 8.1777 6.9624 -1.7459 16 7 6.8258 6.6917 -1.4784 17 6 5.6632 7.3642 -2.0633 18 7 3.6337 -0.6575 -0.0044 19 7 2.3017 -1.0909 -0.0060 20 6 1.8501 -2.4845 -0.0124 21 6 1.6941 -2.9555 -1.4354 22 1 1.9094 -2.2838 -2.2532 23 6 1.2765 -4.2440 -1.6933 24 7 1.0148 -5.0622 -0.6974 25 14 1.0824 -4.8275 -3.4572 26 1 2.3876 -4.7262 -4.1585 27 1 0.6260 -6.2406 -3.4637 28 1 0.0802 -3.9799 -4.1515 29 1 -0.3633 -0.0056 1.0277 30 1 -0.3633 -0.8872 -0.5187 31 1 -0.3633 0.8928 -0.5090 32 1 1.9720 2.1211 0.0004 33 1 5.6587 1.0778 0.0037 34 1 6.6148 3.2075 0.0131 35 1 4.5163 5.0915 1.8950 36 1 6.2805 5.2706 2.0494 37 1 5.2946 6.6339 1.4676 38 1 9.9582 6.0780 -0.9952 39 1 5.3907 8.2208 -1.4468 40 1 5.9083 7.7041 -3.0696 41 1 4.8256 6.6682 -2.1089 42 1 2.5851 -3.1070 0.4978 43 1 0.8919 -2.5584 0.5019 44 1 0.7207 -5.9685 -0.8788 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000616098458.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:00:44 Heat of formation + Delta-G solvation = 146.282475 kcal Electronic energy + Delta-G solvation = -27702.330844 eV Core-core repulsion = 23694.117375 eV Total energy + Delta-G solvation = -4008.213469 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.165 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.60024 -40.79943 -39.72626 -36.26828 -34.73958 -34.50620 -33.41247 -32.10228 -31.27872 -30.77296 -29.95002 -27.74899 -26.64180 -26.31597 -24.68027 -23.10139 -22.51841 -21.71663 -20.50229 -19.92386 -19.61033 -18.18427 -17.08040 -16.69558 -16.67353 -16.40994 -15.79463 -15.40395 -15.25869 -14.99426 -14.60325 -14.33508 -14.07950 -13.92600 -13.72741 -13.63266 -13.28553 -13.00294 -12.62435 -12.46686 -12.31950 -12.23179 -12.10378 -11.75989 -11.65613 -11.40423 -11.09829 -10.82155 -10.47801 -10.46281 -10.26220 -10.18568 -10.09640 -10.00451 -9.68808 -9.57292 -9.42516 -8.63694 -7.91818 -7.41484 -6.24893 -4.32686 1.08383 1.75843 2.30125 2.55518 2.63595 3.04363 3.23455 3.27405 3.31374 3.47490 3.55959 3.81512 4.06197 4.23927 4.28811 4.33704 4.57359 4.66551 4.73342 4.94560 5.02854 5.08507 5.25484 5.40826 5.48586 5.71380 5.79723 5.83764 5.94181 6.00814 6.09070 6.12011 6.19978 6.27055 6.48978 6.55997 6.63086 6.95092 7.04749 7.11904 7.50769 7.64227 7.67591 7.88598 7.90745 8.07552 8.50199 8.67489 8.76221 9.33617 10.82212 Molecular weight = 333.17amu Principal moments of inertia in cm(-1) A = 0.020075 B = 0.002180 C = 0.002110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1394.405022 B =12841.710982 C =13267.055781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C 0.091 3.909 3 C -0.288 4.288 4 C 0.281 3.719 5 N -0.640 5.640 6 C 0.719 3.281 7 O -0.566 6.566 8 N -0.734 5.734 9 C 0.250 3.750 10 H 0.110 0.890 11 C -0.159 4.159 12 C 0.269 3.731 13 N -0.534 5.534 14 C 0.201 3.799 15 N -0.317 5.317 16 N -0.371 5.371 17 C 0.089 3.911 18 N -0.322 5.322 19 N -0.318 5.318 20 C 0.259 3.741 21 C -0.537 4.537 22 H 0.064 0.936 23 C 0.066 3.934 24 N -0.892 5.892 25 Si 0.906 3.094 26 H -0.275 1.275 27 H -0.284 1.284 28 H -0.274 1.274 29 H 0.070 0.930 30 H 0.082 0.918 31 H 0.075 0.925 32 H 0.161 0.839 33 H 0.408 0.592 34 H 0.408 0.592 35 H 0.082 0.918 36 H 0.071 0.929 37 H 0.066 0.934 38 H 0.220 0.780 39 H 0.085 0.915 40 H 0.096 0.904 41 H 0.097 0.903 42 H 0.052 0.948 43 H 0.054 0.946 44 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.805 23.702 1.705 25.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.041 4.041 3 C -0.319 4.319 4 C 0.028 3.972 5 N -0.290 5.290 6 C 0.418 3.582 7 O -0.442 6.442 8 N -0.392 5.392 9 C 0.141 3.859 10 H 0.128 0.872 11 C -0.218 4.218 12 C -0.008 4.008 13 N -0.262 5.262 14 C -0.101 4.101 15 N -0.145 5.145 16 N -0.161 5.161 17 C -0.053 4.053 18 N -0.153 5.153 19 N -0.100 5.100 20 C 0.141 3.859 21 C -0.575 4.575 22 H 0.082 0.918 23 C -0.138 4.138 24 N -0.530 5.530 25 Si 0.733 3.267 26 H -0.200 1.200 27 H -0.210 1.210 28 H -0.199 1.199 29 H 0.089 0.911 30 H 0.100 0.900 31 H 0.093 0.907 32 H 0.178 0.822 33 H 0.243 0.757 34 H 0.243 0.757 35 H 0.101 0.899 36 H 0.090 0.910 37 H 0.085 0.915 38 H 0.236 0.764 39 H 0.103 0.897 40 H 0.115 0.885 41 H 0.116 0.884 42 H 0.070 0.930 43 H 0.072 0.928 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 8.757 23.127 1.429 24.770 hybrid contribution 0.398 -0.125 -1.042 1.122 sum 9.155 23.001 0.387 24.760 Atomic orbital electron populations 1.20373 0.87971 1.03820 1.02502 1.21063 0.94892 0.87149 1.00949 1.21220 0.89622 0.99805 1.21302 1.18643 0.86444 0.89263 1.02880 1.41320 1.07823 1.03532 1.76301 1.15488 0.84351 0.80526 0.77865 1.90874 1.23331 1.73454 1.56523 1.44897 1.08698 1.04715 1.80901 1.19001 0.90419 0.79014 0.97458 0.87211 1.22196 1.04168 1.01377 0.94079 1.24325 0.95750 0.89977 0.90774 1.70399 0.98622 1.29034 1.28101 1.26017 1.01303 0.90648 0.92156 1.78100 0.86320 1.25099 1.24975 1.50254 1.06324 1.27810 1.31734 1.22107 0.84152 0.98468 1.00620 1.77260 0.99973 1.08319 1.29701 1.48978 1.00869 1.07765 1.52417 1.19672 0.95958 0.71375 0.98852 1.21292 1.46878 0.97953 0.91395 0.91810 1.24925 0.94699 0.96044 0.98096 1.69907 1.44860 1.07005 1.31181 0.86418 0.78802 0.77657 0.83826 1.20008 1.20967 1.19936 0.91106 0.89954 0.90654 0.82197 0.75714 0.75677 0.89898 0.91039 0.91486 0.76354 0.89657 0.88523 0.88431 0.93021 0.92799 0.92202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.48 9.89 36.01 0.36 -1.13 16 2 C 0.09 1.89 6.93 -82.28 -0.57 1.32 16 3 C -0.29 -5.81 9.52 -39.83 -0.38 -6.19 16 4 C 0.28 5.64 8.11 -154.36 -1.25 4.39 16 5 N -0.64 -9.79 5.46 -15.51 -0.08 -9.88 16 6 C 0.72 10.03 8.50 -86.92 -0.74 9.29 16 7 O -0.57 -9.34 13.13 5.28 0.07 -9.27 16 8 N -0.73 -7.49 5.07 -59.81 -0.30 -7.79 16 9 C 0.25 2.18 2.95 -69.08 -0.20 1.98 16 10 H 0.11 0.93 6.23 -51.93 -0.32 0.60 16 11 C -0.16 -1.24 9.47 37.16 0.35 -0.89 16 12 C 0.27 2.49 6.78 -155.69 -1.06 1.43 16 13 N -0.53 -5.34 10.88 -11.97 -0.13 -5.47 16 14 C 0.20 1.81 13.03 -91.81 -1.20 0.61 16 15 N -0.32 -3.19 12.70 29.29 0.37 -2.82 16 16 N -0.37 -3.23 4.04 -65.10 -0.26 -3.50 16 17 C 0.09 0.43 11.29 59.85 0.68 1.10 16 18 N -0.32 -7.38 12.59 31.44 0.40 -6.99 16 19 N -0.32 -7.49 3.59 -58.32 -0.21 -7.70 16 20 C 0.26 6.61 5.81 -5.20 -0.03 6.58 16 21 C -0.54 -14.72 9.39 -34.44 -0.32 -15.04 16 22 H 0.06 1.80 7.81 -52.49 -0.41 1.39 16 23 C 0.07 1.79 5.46 -17.82 -0.10 1.69 16 24 N -0.89 -24.97 13.29 55.43 0.74 -24.23 16 25 Si 0.91 21.05 29.54 -169.99 -5.02 16.02 16 26 H -0.27 -6.42 7.11 56.52 0.40 -6.01 16 27 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 28 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 29 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 30 H 0.08 1.49 7.71 -51.93 -0.40 1.09 16 31 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 32 H 0.16 3.10 5.91 -52.49 -0.31 2.79 16 33 H 0.41 5.12 8.84 -40.82 -0.36 4.76 16 34 H 0.41 3.69 8.36 -40.82 -0.34 3.35 16 35 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 36 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 38 H 0.22 1.15 8.06 -52.49 -0.42 0.72 16 39 H 0.08 0.27 8.14 -51.93 -0.42 -0.16 16 40 H 0.10 0.40 8.14 -51.93 -0.42 -0.02 16 41 H 0.10 0.36 6.97 -51.93 -0.36 0.00 16 42 H 0.05 1.41 8.14 -51.93 -0.42 0.98 16 43 H 0.05 1.36 7.65 -51.93 -0.40 0.96 16 44 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16 LS Contribution 379.70 15.07 5.72 5.72 Total: -1.00 -34.64 379.70 -9.02 -43.66 By element: Atomic # 1 Polarization: 12.92 SS G_CDS: -5.85 Total: 7.08 kcal Atomic # 6 Polarization: 9.62 SS G_CDS: -4.46 Total: 5.16 kcal Atomic # 7 Polarization: -68.89 SS G_CDS: 0.51 Total: -68.38 kcal Atomic # 8 Polarization: -9.34 SS G_CDS: 0.07 Total: -9.27 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -34.64 -9.02 -43.66 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000616098458.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 189.946 kcal (2) G-P(sol) polarization free energy of solvation -34.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 155.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.664 kcal (6) G-S(sol) free energy of system = (1) + (5) 146.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds