Wall clock time and date at job start Tue Mar 31 2020 18:00:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35244 * 126.07226 * 2 1 4 4 C 1.40400 * 107.86833 * 179.90760 * 3 2 1 5 5 N 1.40197 * 125.97326 * 180.14908 * 4 3 2 6 6 C 1.34774 * 119.99701 * 0.22510 * 5 4 3 7 7 O 1.21596 * 120.00529 * 0.02562 * 6 5 4 8 8 N 1.34775 * 119.99859 * 180.02562 * 6 5 4 9 9 C 1.46505 * 120.00267 * 180.02562 * 8 6 5 10 10 H 1.09000 * 109.46347 * 324.99904 * 9 8 6 11 11 C 1.52999 * 109.47246 * 84.99824 * 9 8 6 12 12 C 1.50697 * 109.47130 * 205.00288 * 9 8 6 13 13 N 1.30840 * 125.96207 * 315.01908 * 12 9 8 14 14 C 1.33236 * 109.82873 * 180.02562 * 13 12 9 15 15 N 1.30715 * 108.94810 * 359.97438 * 14 13 12 16 16 N 1.34434 * 125.96300 * 134.71242 * 12 9 8 17 17 C 1.46497 * 126.81986 * 0.02562 * 16 12 9 18 18 N 1.31208 * 108.05420 * 0.35939 * 4 3 2 19 19 N 1.34968 * 126.07013 * 180.31258 * 2 1 3 20 20 C 1.46496 * 125.97468 * 359.94647 * 19 2 1 21 21 C 1.50702 * 109.47635 * 89.99791 * 20 19 2 22 22 H 1.07999 * 119.99790 * 359.97438 * 21 20 19 23 23 C 1.37878 * 119.99972 * 179.97438 * 21 20 19 24 24 N 1.31512 * 120.00160 * 359.97438 * 23 21 20 25 25 Si 1.86805 * 119.99693 * 179.97438 * 23 21 20 26 26 H 1.48507 * 109.46844 * 60.00071 * 25 23 21 27 27 H 1.48494 * 109.46947 * 179.97438 * 25 23 21 28 28 H 1.48493 * 109.47031 * 300.00020 * 25 23 21 29 29 H 1.09002 * 109.47152 * 269.68666 * 1 2 3 30 30 H 1.09001 * 109.46980 * 149.68766 * 1 2 3 31 31 H 1.09004 * 109.47113 * 29.68747 * 1 2 3 32 32 H 1.08001 * 126.06270 * 0.02562 * 3 2 1 33 33 H 0.96995 * 119.99860 * 180.22903 * 5 4 3 34 34 H 0.97005 * 120.00218 * 359.97438 * 8 6 5 35 35 H 1.08997 * 109.47083 * 300.00026 * 11 9 8 36 36 H 1.08995 * 109.46749 * 60.00403 * 11 9 8 37 37 H 1.08997 * 109.46811 * 180.02562 * 11 9 8 38 38 H 1.08000 * 125.52108 * 180.02562 * 14 13 12 39 39 H 1.08999 * 109.46926 * 89.99790 * 17 16 12 40 40 H 1.08999 * 109.46825 * 209.99884 * 17 16 12 41 41 H 1.09002 * 109.47518 * 329.99829 * 17 16 12 42 42 H 1.09001 * 109.47030 * 210.00125 * 20 19 2 43 43 H 1.09005 * 109.47259 * 329.99077 * 20 19 2 44 44 H 0.96997 * 120.00168 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3034 1.0931 0.0000 4 6 3.6371 0.6545 0.0022 5 7 4.7738 1.4751 0.0058 6 6 4.6370 2.8159 0.0121 7 8 3.5277 3.3139 0.0152 8 7 5.7298 3.6047 0.0151 9 6 5.5812 5.0622 0.0226 10 1 4.7063 5.3411 -0.5647 11 6 5.4056 5.5496 1.4622 12 6 6.8107 5.6955 -0.5758 13 7 8.0496 5.3680 -0.3119 14 6 8.8799 6.1337 -1.0187 15 7 8.1777 6.9624 -1.7459 16 7 6.8258 6.6917 -1.4784 17 6 5.6632 7.3642 -2.0633 18 7 3.6337 -0.6575 -0.0044 19 7 2.3017 -1.0909 -0.0060 20 6 1.8501 -2.4845 -0.0124 21 6 1.6941 -2.9555 -1.4354 22 1 1.9094 -2.2838 -2.2532 23 6 1.2765 -4.2440 -1.6933 24 7 1.0148 -5.0622 -0.6974 25 14 1.0824 -4.8275 -3.4572 26 1 2.3876 -4.7262 -4.1585 27 1 0.6260 -6.2406 -3.4637 28 1 0.0802 -3.9799 -4.1515 29 1 -0.3633 -0.0056 1.0277 30 1 -0.3633 -0.8872 -0.5187 31 1 -0.3633 0.8928 -0.5090 32 1 1.9720 2.1211 0.0004 33 1 5.6587 1.0778 0.0037 34 1 6.6148 3.2075 0.0131 35 1 4.5163 5.0915 1.8950 36 1 6.2805 5.2706 2.0494 37 1 5.2946 6.6339 1.4676 38 1 9.9582 6.0780 -0.9952 39 1 5.3907 8.2208 -1.4468 40 1 5.9083 7.7041 -3.0696 41 1 4.8256 6.6682 -2.1089 42 1 2.5851 -3.1070 0.4978 43 1 0.8919 -2.5584 0.5019 44 1 0.7207 -5.9685 -0.8788 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000616098458.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:00:43 Heat of formation + Delta-G solvation = 123.652288 kcal Electronic energy + Delta-G solvation = -27703.312163 eV Core-core repulsion = 23694.117375 eV Total energy + Delta-G solvation = -4009.194788 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.165 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -43.26616 -42.28532 -40.99524 -37.23696 -36.13185 -35.31155 -35.07769 -33.34000 -32.66100 -32.25761 -30.77650 -28.49906 -28.24398 -27.82125 -25.60929 -24.79121 -23.31935 -22.82732 -21.43510 -21.16037 -21.02570 -19.33709 -18.76243 -17.91661 -17.75681 -17.27919 -17.08471 -16.77590 -16.35141 -16.14794 -15.93571 -15.66030 -15.46999 -14.68380 -14.66371 -14.44622 -14.28619 -14.09311 -13.90568 -13.76194 -13.57897 -13.53361 -13.24050 -13.12049 -12.83704 -12.79063 -12.65968 -12.41364 -12.22528 -12.09939 -11.54765 -11.33765 -11.17884 -11.13537 -10.84306 -10.71868 -10.68524 -10.38415 -9.53362 -9.05956 -8.30715 -6.48587 0.39111 0.98899 1.06412 1.35785 1.39168 1.40776 1.49672 1.67017 1.83464 2.11261 2.36552 2.38342 2.82061 2.98521 3.06849 3.55564 3.67425 3.89104 4.04443 4.05511 4.19632 4.35162 4.46408 4.51394 4.61577 4.64739 4.76956 4.81513 4.83860 4.90017 5.00300 5.04295 5.11900 5.18204 5.21885 5.24308 5.38365 5.40486 5.55423 5.67454 5.81465 5.83814 6.00020 6.30627 6.63123 6.70068 6.97726 7.13153 7.22298 7.35668 8.74650 Molecular weight = 333.17amu Principal moments of inertia in cm(-1) A = 0.020075 B = 0.002180 C = 0.002110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1394.405022 B =12841.710982 C =13267.055781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.086 3.914 3 C -0.293 4.293 4 C 0.292 3.708 5 N -0.635 5.635 6 C 0.721 3.279 7 O -0.589 6.589 8 N -0.717 5.717 9 C 0.251 3.749 10 H 0.117 0.883 11 C -0.152 4.152 12 C 0.264 3.736 13 N -0.552 5.552 14 C 0.196 3.804 15 N -0.341 5.341 16 N -0.371 5.371 17 C 0.078 3.922 18 N -0.362 5.362 19 N -0.344 5.344 20 C 0.276 3.724 21 C -0.553 4.553 22 H 0.049 0.951 23 C 0.023 3.977 24 N -0.918 5.918 25 Si 0.970 3.030 26 H -0.276 1.276 27 H -0.273 1.273 28 H -0.265 1.265 29 H 0.092 0.908 30 H 0.065 0.935 31 H 0.103 0.897 32 H 0.172 0.828 33 H 0.420 0.580 34 H 0.415 0.585 35 H 0.071 0.929 36 H 0.067 0.933 37 H 0.086 0.914 38 H 0.247 0.753 39 H 0.105 0.895 40 H 0.102 0.898 41 H 0.109 0.891 42 H 0.023 0.977 43 H 0.052 0.948 44 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.725 25.385 0.946 26.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.044 4.044 3 C -0.324 4.324 4 C 0.037 3.963 5 N -0.287 5.287 6 C 0.421 3.579 7 O -0.466 6.466 8 N -0.374 5.374 9 C 0.143 3.857 10 H 0.135 0.865 11 C -0.211 4.211 12 C -0.013 4.013 13 N -0.281 5.281 14 C -0.106 4.106 15 N -0.169 5.169 16 N -0.162 5.162 17 C -0.063 4.063 18 N -0.192 5.192 19 N -0.127 5.127 20 C 0.157 3.843 21 C -0.591 4.591 22 H 0.068 0.932 23 C -0.178 4.178 24 N -0.556 5.556 25 Si 0.793 3.207 26 H -0.202 1.202 27 H -0.198 1.198 28 H -0.189 1.189 29 H 0.111 0.889 30 H 0.084 0.916 31 H 0.122 0.878 32 H 0.189 0.811 33 H 0.257 0.743 34 H 0.252 0.748 35 H 0.090 0.910 36 H 0.086 0.914 37 H 0.104 0.896 38 H 0.263 0.737 39 H 0.123 0.877 40 H 0.121 0.879 41 H 0.127 0.873 42 H 0.041 0.959 43 H 0.070 0.930 44 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 8.708 24.863 0.673 26.352 hybrid contribution 0.492 -0.492 -0.772 1.039 sum 9.200 24.371 -0.099 26.050 Atomic orbital electron populations 1.20497 0.85408 1.04347 1.04076 1.21766 0.96656 0.86439 0.99530 1.21416 0.89620 0.99997 1.21379 1.18924 0.87987 0.88859 1.00533 1.41337 1.07214 1.03788 1.76316 1.15523 0.84814 0.80051 0.77527 1.90846 1.24510 1.73678 1.57561 1.44793 1.07995 1.05221 1.79436 1.19143 0.90609 0.77701 0.98278 0.86546 1.22129 1.03396 1.02525 0.93068 1.24278 0.95616 0.90340 0.91085 1.70386 0.99115 1.29745 1.28810 1.26626 1.02543 0.89977 0.91449 1.78059 0.87094 1.25968 1.25796 1.50494 1.06684 1.27658 1.31337 1.22441 0.83275 0.99297 1.01240 1.77178 1.00125 1.09906 1.32017 1.48760 1.01664 1.07494 1.54779 1.19215 0.94861 0.72533 0.97662 1.21420 1.47517 0.98338 0.91843 0.93229 1.25723 0.94013 0.95916 1.02172 1.69992 1.45077 1.07407 1.33130 0.85432 0.78711 0.77680 0.78827 1.20184 1.19798 1.18944 0.88920 0.91612 0.87818 0.81102 0.74271 0.74803 0.90980 0.91370 0.89556 0.73689 0.87712 0.87941 0.87288 0.95875 0.93007 0.91755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.77 9.89 71.24 0.70 -2.07 16 2 C 0.09 3.57 6.93 41.39 0.29 3.86 16 3 C -0.29 -11.60 9.52 22.11 0.21 -11.39 16 4 C 0.29 11.66 8.11 133.31 1.08 12.74 16 5 N -0.64 -18.92 5.46 -321.23 -1.75 -20.67 16 6 C 0.72 19.17 8.50 179.06 1.52 20.70 16 7 O -0.59 -18.52 13.13 -4.02 -0.05 -18.58 16 8 N -0.72 -13.51 5.07 -461.40 -2.34 -15.85 16 9 C 0.25 3.93 2.95 44.24 0.13 4.06 16 10 H 0.12 1.72 6.23 -2.39 -0.01 1.70 16 11 C -0.15 -2.10 9.47 71.98 0.68 -1.42 16 12 C 0.26 4.43 6.78 138.22 0.94 5.37 16 13 N -0.55 -10.24 10.88 -191.77 -2.09 -12.32 16 14 C 0.20 3.24 13.03 180.77 2.36 5.60 16 15 N -0.34 -6.39 12.70 -61.25 -0.78 -7.17 16 16 N -0.37 -5.84 4.04 -359.87 -1.45 -7.29 16 17 C 0.08 0.60 11.29 127.77 1.44 2.04 16 18 N -0.36 -16.90 12.59 -54.44 -0.69 -17.58 16 19 N -0.34 -16.58 3.59 -338.44 -1.22 -17.79 16 20 C 0.28 14.59 5.81 85.63 0.50 15.09 16 21 C -0.55 -30.96 9.39 25.60 0.24 -30.72 16 22 H 0.05 2.86 7.81 -2.91 -0.02 2.84 16 23 C 0.02 1.25 5.46 84.66 0.46 1.71 16 24 N -0.92 -51.83 13.29 21.45 0.28 -51.55 16 25 Si 0.97 42.98 29.54 68.60 2.03 45.01 16 26 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 27 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 28 H -0.26 -11.28 7.11 99.48 0.71 -10.57 16 29 H 0.09 2.59 8.14 -2.39 -0.02 2.57 16 30 H 0.06 2.37 7.71 -2.39 -0.02 2.35 16 31 H 0.10 2.74 8.14 -2.38 -0.02 2.73 16 32 H 0.17 6.38 5.91 -2.91 -0.02 6.37 16 33 H 0.42 10.23 8.84 -92.71 -0.82 9.41 16 34 H 0.41 6.87 8.36 -92.70 -0.77 6.10 16 35 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 36 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 37 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 38 H 0.25 2.16 8.06 -2.91 -0.02 2.13 16 39 H 0.10 0.40 8.14 -2.39 -0.02 0.38 16 40 H 0.10 0.67 8.14 -2.39 -0.02 0.65 16 41 H 0.11 0.58 6.97 -2.39 -0.02 0.56 16 42 H 0.02 1.33 8.14 -2.39 -0.02 1.31 16 43 H 0.05 2.70 7.65 -2.38 -0.02 2.68 16 44 H 0.27 14.44 8.31 -92.71 -0.77 13.67 16 Total: -1.00 -74.73 379.70 1.97 -72.77 By element: Atomic # 1 Polarization: 26.00 SS G_CDS: -0.53 Total: 25.47 kcal Atomic # 6 Polarization: 15.01 SS G_CDS: 10.55 Total: 25.56 kcal Atomic # 7 Polarization: -140.20 SS G_CDS: -10.03 Total: -150.23 kcal Atomic # 8 Polarization: -18.52 SS G_CDS: -0.05 Total: -18.58 kcal Atomic # 14 Polarization: 42.98 SS G_CDS: 2.03 Total: 45.01 kcal Total: -74.73 1.97 -72.77 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000616098458.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 196.420 kcal (2) G-P(sol) polarization free energy of solvation -74.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 121.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.768 kcal (6) G-S(sol) free energy of system = (1) + (5) 123.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds