Wall clock time and date at job start Tue Mar 31 2020 18:00:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.35244 * 126.07048 * 2 1 4 4 C 1.40401 * 107.86868 * 179.97438 * 3 2 1 5 5 N 1.40193 * 125.97600 * 179.97438 * 4 3 2 6 6 C 1.34777 * 119.99728 * 0.02562 * 5 4 3 7 7 O 1.21589 * 119.99982 * 359.97438 * 6 5 4 8 8 N 1.34777 * 119.99754 * 179.97438 * 6 5 4 9 9 C 1.46509 * 119.99703 * 179.97438 * 8 6 5 10 10 H 1.08999 * 109.47092 * 35.00228 * 9 8 6 11 11 C 1.53000 * 109.47115 * 275.00138 * 9 8 6 12 12 C 1.50695 * 109.46713 * 155.00194 * 9 8 6 13 13 N 1.30831 * 125.96471 * 45.02373 * 12 9 8 14 14 C 1.33244 * 109.82945 * 179.97438 * 13 12 9 15 15 N 1.30709 * 108.94830 * 0.02562 * 14 13 12 16 16 N 1.34432 * 125.95905 * 224.71557 * 12 9 8 17 17 C 1.46493 * 126.82535 * 0.02562 * 16 12 9 18 18 N 1.31214 * 108.05413 * 359.97438 * 4 3 2 19 19 N 1.34965 * 126.06952 * 179.97438 * 2 1 3 20 20 C 1.46493 * 125.97624 * 0.02931 * 19 2 1 21 21 C 1.50690 * 109.47472 * 270.02686 * 20 19 2 22 22 H 1.07996 * 120.00250 * 0.02562 * 21 20 19 23 23 C 1.37883 * 120.00028 * 179.97438 * 21 20 19 24 24 N 1.31507 * 120.00019 * 0.02562 * 23 21 20 25 25 Si 1.86808 * 119.99839 * 179.97438 * 23 21 20 26 26 H 1.48499 * 109.46707 * 90.00476 * 25 23 21 27 27 H 1.48497 * 109.46868 * 210.00037 * 25 23 21 28 28 H 1.48495 * 109.47424 * 330.00516 * 25 23 21 29 29 H 1.09005 * 109.47188 * 90.02621 * 1 2 3 30 30 H 1.08997 * 109.47424 * 210.02502 * 1 2 3 31 31 H 1.09004 * 109.47111 * 330.02462 * 1 2 3 32 32 H 1.07998 * 126.06683 * 359.93862 * 3 2 1 33 33 H 0.96999 * 120.00586 * 179.97438 * 5 4 3 34 34 H 0.96999 * 120.00560 * 359.97438 * 8 6 5 35 35 H 1.09000 * 109.47091 * 60.00254 * 11 9 8 36 36 H 1.08998 * 109.46903 * 180.02562 * 11 9 8 37 37 H 1.08999 * 109.47214 * 300.00015 * 11 9 8 38 38 H 1.08005 * 125.52474 * 180.02562 * 14 13 12 39 39 H 1.08998 * 109.47389 * 89.99413 * 17 16 12 40 40 H 1.09001 * 109.47440 * 209.99900 * 17 16 12 41 41 H 1.08999 * 109.46954 * 329.99490 * 17 16 12 42 42 H 1.09003 * 109.47262 * 30.03261 * 20 19 2 43 43 H 1.09012 * 109.47086 * 150.02761 * 20 19 2 44 44 H 0.97001 * 119.99800 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3032 1.0932 0.0000 4 6 3.6370 0.6546 0.0006 5 7 4.7737 1.4751 0.0003 6 6 4.6370 2.8159 -0.0001 7 8 3.5277 3.3139 -0.0007 8 7 5.7298 3.6047 0.0001 9 6 5.5811 5.0623 -0.0010 10 1 4.7064 5.3387 0.5878 11 6 5.4052 5.5559 -1.4384 12 6 6.8108 5.6930 0.5999 13 7 8.0496 5.3672 0.3335 14 6 8.8801 6.1297 1.0437 15 7 8.1781 6.9545 1.7755 16 7 6.8263 6.6925 1.4987 17 6 5.6642 7.3711 2.0774 18 7 3.6336 -0.6575 0.0015 19 7 2.3016 -1.0909 0.0005 20 6 1.8500 -2.4845 0.0005 21 6 1.6939 -2.9620 1.4212 22 1 1.9091 -2.2941 2.2421 23 6 1.2753 -4.2514 1.6731 24 7 1.0128 -5.0646 0.6735 25 14 1.0825 -4.8435 3.4343 26 1 -0.3003 -4.5682 3.9004 27 1 1.3445 -6.3039 3.4970 28 1 2.0499 -4.1292 4.3055 29 1 -0.3634 -0.0005 -1.0277 30 1 -0.3634 -0.8897 0.5142 31 1 -0.3633 0.8902 0.5135 32 1 1.9720 2.1211 -0.0009 33 1 5.6587 1.0779 0.0011 34 1 6.6147 3.2076 0.0009 35 1 4.5157 5.0997 -1.8730 36 1 5.2950 6.6403 -1.4392 37 1 6.2799 5.2796 -2.0271 38 1 9.9584 6.0750 1.0187 39 1 5.3552 6.8525 2.9850 40 1 5.9277 8.4008 2.3191 41 1 4.8447 7.3650 1.3587 42 1 0.8918 -2.5560 -0.5142 43 1 2.5852 -3.1047 -0.5126 44 1 0.7186 -5.9718 0.8507 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000616098460.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:00:48 Heat of formation + Delta-G solvation = 146.118244 kcal Electronic energy + Delta-G solvation = -27700.594491 eV Core-core repulsion = 23692.373900 eV Total energy + Delta-G solvation = -4008.220591 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.165 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.60078 -40.79778 -39.72458 -36.26823 -34.73841 -34.50594 -33.41304 -32.10409 -31.27871 -30.77288 -29.94771 -27.75516 -26.64154 -26.31509 -24.66937 -23.10064 -22.51905 -21.71744 -20.50783 -19.92368 -19.60878 -18.17864 -17.07535 -16.71944 -16.67592 -16.37407 -15.79483 -15.40097 -15.25736 -14.98885 -14.60367 -14.34295 -14.07556 -13.96652 -13.71916 -13.59169 -13.29082 -13.00192 -12.64978 -12.47332 -12.31826 -12.22373 -12.09591 -11.77976 -11.65625 -11.40750 -11.08837 -10.84067 -10.46649 -10.45627 -10.26590 -10.18794 -10.09120 -10.00433 -9.68700 -9.56194 -9.41872 -8.64170 -7.91661 -7.41347 -6.25096 -4.32728 1.08041 1.75886 2.30442 2.55479 2.63680 3.04601 3.21290 3.27921 3.33233 3.47501 3.56158 3.81708 4.05048 4.24014 4.29404 4.33753 4.60556 4.65789 4.74708 4.94535 5.00474 5.08428 5.24036 5.40793 5.48063 5.71423 5.79747 5.83514 5.94302 6.00745 6.09159 6.11995 6.20101 6.27124 6.48986 6.56117 6.63197 6.95201 7.04797 7.11970 7.50928 7.64138 7.67744 7.88687 7.90817 8.07610 8.50443 8.67668 8.76470 9.33633 10.82031 Molecular weight = 333.17amu Principal moments of inertia in cm(-1) A = 0.020100 B = 0.002179 C = 0.002109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1392.703663 B =12848.550320 C =13273.889481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C 0.091 3.909 3 C -0.288 4.288 4 C 0.281 3.719 5 N -0.640 5.640 6 C 0.719 3.281 7 O -0.566 6.566 8 N -0.733 5.733 9 C 0.250 3.750 10 H 0.110 0.890 11 C -0.159 4.159 12 C 0.270 3.730 13 N -0.533 5.533 14 C 0.201 3.799 15 N -0.317 5.317 16 N -0.371 5.371 17 C 0.089 3.911 18 N -0.322 5.322 19 N -0.318 5.318 20 C 0.259 3.741 21 C -0.536 4.536 22 H 0.064 0.936 23 C 0.065 3.935 24 N -0.892 5.892 25 Si 0.906 3.094 26 H -0.277 1.277 27 H -0.283 1.283 28 H -0.272 1.272 29 H 0.070 0.930 30 H 0.082 0.918 31 H 0.075 0.925 32 H 0.161 0.839 33 H 0.408 0.592 34 H 0.408 0.592 35 H 0.082 0.918 36 H 0.066 0.934 37 H 0.071 0.929 38 H 0.220 0.780 39 H 0.085 0.915 40 H 0.096 0.904 41 H 0.097 0.903 42 H 0.054 0.946 43 H 0.052 0.948 44 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.822 23.814 -1.705 25.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.041 4.041 3 C -0.319 4.319 4 C 0.028 3.972 5 N -0.290 5.290 6 C 0.418 3.582 7 O -0.442 6.442 8 N -0.392 5.392 9 C 0.141 3.859 10 H 0.128 0.872 11 C -0.219 4.219 12 C -0.008 4.008 13 N -0.261 5.261 14 C -0.101 4.101 15 N -0.145 5.145 16 N -0.162 5.162 17 C -0.053 4.053 18 N -0.153 5.153 19 N -0.100 5.100 20 C 0.141 3.859 21 C -0.574 4.574 22 H 0.082 0.918 23 C -0.138 4.138 24 N -0.529 5.529 25 Si 0.733 3.267 26 H -0.203 1.203 27 H -0.209 1.209 28 H -0.197 1.197 29 H 0.089 0.911 30 H 0.100 0.900 31 H 0.093 0.907 32 H 0.178 0.822 33 H 0.243 0.757 34 H 0.243 0.757 35 H 0.101 0.899 36 H 0.085 0.915 37 H 0.090 0.910 38 H 0.236 0.764 39 H 0.104 0.896 40 H 0.115 0.885 41 H 0.115 0.885 42 H 0.072 0.928 43 H 0.070 0.930 44 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 8.778 23.243 -1.432 24.886 hybrid contribution 0.384 -0.153 1.053 1.131 sum 9.163 23.090 -0.379 24.844 Atomic orbital electron populations 1.20371 0.87973 1.03823 1.02498 1.21059 0.94891 0.87148 1.00957 1.21219 0.89621 0.99805 1.21304 1.18643 0.86445 0.89261 1.02871 1.41321 1.07822 1.03531 1.76308 1.15487 0.84350 0.80524 0.77865 1.90871 1.23325 1.73458 1.56503 1.44883 1.08695 1.04687 1.80904 1.18992 0.90439 0.79072 0.97408 0.87194 1.22209 1.04199 1.01313 0.94175 1.24323 0.95752 0.89878 0.90853 1.70397 0.98622 1.29037 1.28083 1.26018 1.01302 0.90876 0.91938 1.78096 0.86342 1.25361 1.24667 1.50254 1.06335 1.27663 1.31915 1.22097 0.84056 0.99014 1.00153 1.77264 0.99968 1.08312 1.29711 1.48977 1.00872 1.07756 1.52421 1.19676 0.95962 0.71380 0.98875 1.21330 1.46730 0.97954 0.91431 0.91758 1.24929 0.94715 0.96075 0.98078 1.69918 1.44908 1.07114 1.31005 0.86362 0.78651 0.77914 0.83804 1.20305 1.20889 1.19713 0.91107 0.89958 0.90652 0.82196 0.75716 0.75677 0.89882 0.91504 0.91024 0.76354 0.89640 0.88518 0.88487 0.92799 0.93011 0.92263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.48 9.89 36.00 0.36 -1.13 16 2 C 0.09 1.89 6.92 -82.28 -0.57 1.32 16 3 C -0.29 -5.81 9.52 -39.83 -0.38 -6.19 16 4 C 0.28 5.65 8.11 -154.36 -1.25 4.40 16 5 N -0.64 -9.81 5.46 -15.51 -0.08 -9.90 16 6 C 0.72 10.06 8.50 -86.92 -0.74 9.32 16 7 O -0.57 -9.35 13.13 5.29 0.07 -9.28 16 8 N -0.73 -7.51 5.07 -59.81 -0.30 -7.81 16 9 C 0.25 2.18 2.85 -69.08 -0.20 1.99 16 10 H 0.11 0.93 6.58 -51.93 -0.34 0.59 16 11 C -0.16 -1.24 9.47 37.16 0.35 -0.89 16 12 C 0.27 2.49 6.78 -155.70 -1.06 1.43 16 13 N -0.53 -5.34 10.88 -11.97 -0.13 -5.47 16 14 C 0.20 1.81 13.03 -91.81 -1.20 0.61 16 15 N -0.32 -3.19 12.70 29.29 0.37 -2.82 16 16 N -0.37 -3.24 4.04 -65.11 -0.26 -3.50 16 17 C 0.09 0.43 11.11 59.84 0.66 1.09 16 18 N -0.32 -7.39 12.59 31.44 0.40 -6.99 16 19 N -0.32 -7.49 3.59 -58.33 -0.21 -7.70 16 20 C 0.26 6.61 5.81 -5.20 -0.03 6.58 16 21 C -0.54 -14.70 9.39 -34.44 -0.32 -15.03 16 22 H 0.06 1.82 7.81 -52.49 -0.41 1.41 16 23 C 0.07 1.78 5.46 -17.82 -0.10 1.68 16 24 N -0.89 -24.97 13.29 55.43 0.74 -24.23 16 25 Si 0.91 21.05 29.54 -169.99 -5.02 16.03 16 26 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 27 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 28 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 29 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 30 H 0.08 1.49 7.71 -51.93 -0.40 1.09 16 31 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 32 H 0.16 3.11 5.91 -52.49 -0.31 2.80 16 33 H 0.41 5.13 8.84 -40.82 -0.36 4.77 16 34 H 0.41 3.70 8.36 -40.82 -0.34 3.36 16 35 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 37 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.22 1.15 8.06 -52.48 -0.42 0.72 16 39 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 40 H 0.10 0.36 8.14 -51.93 -0.42 -0.07 16 41 H 0.10 0.28 7.39 -51.93 -0.38 -0.11 16 42 H 0.05 1.36 7.65 -51.93 -0.40 0.96 16 43 H 0.05 1.41 8.14 -51.92 -0.42 0.99 16 44 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 LS Contribution 380.19 15.07 5.73 5.73 Total: -1.00 -34.72 380.19 -9.06 -43.78 By element: Atomic # 1 Polarization: 12.87 SS G_CDS: -5.89 Total: 6.98 kcal Atomic # 6 Polarization: 9.65 SS G_CDS: -4.47 Total: 5.19 kcal Atomic # 7 Polarization: -68.94 SS G_CDS: 0.51 Total: -68.42 kcal Atomic # 8 Polarization: -9.35 SS G_CDS: 0.07 Total: -9.28 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -34.72 -9.06 -43.78 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000616098460.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 189.899 kcal (2) G-P(sol) polarization free energy of solvation -34.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 155.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.781 kcal (6) G-S(sol) free energy of system = (1) + (5) 146.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds